Genes in A. tumefaciens for which no orthologs in S. meliloti nor in
M. loti were found (hypotheticals and conserved hypotheticals excluded):

Circular chromosome

gene-id  product

Atu0146  flavoprotein alpha-component
Atu0071  ribonucleoside-diphosphate reductase 2 beta chain
Atu0069  NrdI protein involved in ribonucleotide reduction
Atu2795  cobalamin biosynthetic protein
Atu2502  heme oxygenase
Atu2477  DNA-binding protein
Atu2371  endo-1,4-beta-xylanase
Atu2294  aminoglycoside N6'-acetyltransferase
Atu2171  hydrolase
Atu2157  tyrosine/serine protein phosphatase
Atu2108  glutathionylspermidine synthetase
Atu2002  esterase/lipase
Atu1861  transporter
Atu1837  transcriptional regulator
Atu1663  amidohydrolase
Atu1491  sodium bile acid symporter family protein
Atu1311  acetyltransferase
Atu1192  transcriptional regulator, MarR family
Atu1183  DNA-directed RNA polymerase
Atu0956  prohead protease
Atu0951  large terminase
Atu0944  sucrose hydrolase
Atu0940  PemK protein
Atu0939  PemI protein
Atu0796  AttS protein
Atu0660  hydrolase
Atu0465  transcriptional regulator
Atu0462  cell wall lysis associated protein
Atu0413  stress induced protein

Linear chromosome

Atu3025  oligo alginate lyase
Atu3044  asparaginase
Atu3128  picA locas ORF1
Atu3129  polygalacturonase
Atu3285  glycosidase
Atu3288  hydoxyethylthiazole kinase
Atu3304  cellulose synthesis protein
Atu3305  cellulose synthesis protein
Atu3306  cellulose synthesis protein
Atu3307  endoglucanase
Atu3655  bacterioferritin comigratory protein
Atu3656  acetyltransferase
Atu3688  ABC transporter, membrane spanning protein [iron(III) dicitrate]
Atu3791  L-asparaginase
Atu3914  alpha-amylase
Atu3975  UDP-galactopyranose mutase
Atu4088  transcriptional regulator
Atu4486  nitroreductase
Atu4548  3-oxoadipate CoA-transferase subunit B
Atu4553  myo-inositol catabolism protein
Atu4560  polygalacturonase
Atu4589  sodium bile acid symporter family protein
Atu4734  aconitate hydratase 2
Atu4771  oxalate decarboxylase
Atu4808  exopolysaccharide synthesis protein
Atu4857  mobilization protein C
Atu4892  insertion element IS136

At plasmid

Atu5012  DNA-invertase
Atu5038  transposase
Atu5113  transcriptional regulator
Atu5130  attachment protein
Atu5149  Acetyltransferase
Atu5261  tannase
Atu5425  2-hydroxychromene-2-carboxylate isomerase

Ti plasmid

Atu6000  agrocinopine synthase
Atu6001  5 protein
Atu6002  C protein
Atu6003  C' protein
Atu6004  D protein
Atu6005  E protein
Atu6006  isopentyladenosine phosphotransferase
Atu6008  agrocinopine synthase
Atu6009  gene 5 protein
Atu6011  tryptophan 2-monooxygenase
Atu6013  protein 6a
Atu6014  protein 6b
Atu6015  D-nopaline dehydrogenase
Atu6032  conjugal transfer protein
Atu6036  entry-exclusion protein
Atu6129  conjugal transfer protein, Dtr system
Atu6130  conjugal transfer protein, Dtr system
Atu6131  transcriptional repressor
Atu6154  exported virulence protein
Atu6156  virA/G regulated gene
Atu6171  component of type IV secretion system
Atu6173  component of type IV secretion system
Atu6179  virA/G regulated protein
Atu6181  virA/G regulated protein
Atu6182  endonuclease
Atu6183  virA/G regulated protein
Atu6185  virA/G regulated protein
Atu6186  virA/G regulated protein
Atu6187  virA/G regulated protein
Atu6188  virA/G regulated protein
Atu6189  protein secretion chaperone
Atu6190  exported virulence protein
Atu6191  virA/G regulated protein
Atu6197  agrocinopine phosphodiesterase