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Catalytic mechanism and performance of computationally designed enzymes for Kemp elimination. Journal of the American Chemical Society. 130(47), 15907-15.(2008).
Matching theory and experiment in protein folding.. Current opinion in structural biology. 9(2), 189-96.(1999).
Simple physical models connect theory and experiment in protein folding kinetics. Journal of molecular biology. 322(2), 463-76.(2002).
Prediction of protein-folding mechanisms from free-energy landscapes derived from native structures. Proceedings of the National Academy of Sciences of the United States of America. 96(20), 11305-10.(1999).
Robust design and optimization of retroaldol enzymes.. Protein science : a publication of the Protein Society. 21(5), 717-26.(2012).
Prediction of the structure of symmetrical protein assemblies. Proceedings of the National Academy of Sciences of the United States of America. 104(45), 17656-61.(2007).
Emergence of symmetry in homooligomeric biological assemblies. Proceedings of the National Academy of Sciences of the United States of America. 105(42), 16148-52.(2008).
Computational redesign of endonuclease DNA binding and cleavage specificity. Nature. 441(7093), 656-9.(2006).
Assessment of the optimization of affinity and specificity at protein-DNA interfaces. Nucleic acids research. 37(10), e73.(2009).
Computational reprogramming of homing endonuclease specificity at multiple adjacent base pairs. Nucleic acids research. 38(16), 5601-8.(2010).
Comparison of Quantum Mechanics and Molecular Mechanics Dimerization Energy Landscapes for Pairs of Ring-Containing Amino Acids in Proteins. Journal of Physical Chemistry B .(2004).
Computation-guided backbone grafting of a discontinuous motif onto a protein scaffold. Science. 334(6054), 373-6.(2011).
Computational design of high-affinity epitope scaffolds by backbone grafting of a linear epitope. Journal of molecular biology. 415(1), 175-92.(2012).