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Structural basis for scaffolding-mediated assembly and maturation of a dsDNA virus. Proceedings of the National Academy of Sciences of the United States of America. 108(4), 1355-60.(2011).
A new hydrogen-bonding potential for the design of protein-RNA interactions predicts specific contacts and discriminates decoys. Nucleic acids research. 32(17), 5147-62.(2004).
Improvement in protein functional site prediction by distinguishing structural and functional constraints on protein family evolution using computational design. Nucleic acids research. 33(18), 5861-7.(2005).
Engineering V-type nerve agents detoxifying enzymes using computationally focused libraries. ACS chemical biology. 8(11), 2394-403.(2013).
Design, activity, and structure of a highly specific artificial endonuclease. Molecular cell. 10(4), 895-905.(2002).
Ab initio methods. Methods of biochemical analysis. 44, 547-57.(2003).
Homology modeling using parametric alignment ensemble generation with consensus and energy-based model selection. Nucleic acids research. 34(17), e112.(2006).
Prediction of CASP6 structures using automated Robetta protocols. Proteins. 61 Suppl 7, 157-66.(2005).
Automated prediction of CASP-5 structures using the Robetta server. Proteins. 53 Suppl 6, 524-33.(2003).
Relaxation of backbone bond geometry improves protein energy landscape modeling.. Protein science : a publication of the Protein Society.(2013).
Increasing public involvement in structural biology. Structure (London, England : 1993). 21(9), 1482-4.(2013).
Predicting protein structures with a multiplayer online game. Nature. 466(7307), 756-60.(2010).
The Challenge of Designing Scientific Discovery Games. Proceedings of the Fifth international Conference on the Foundations of Digital Games.(2010).