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Structural basis for scaffolding-mediated assembly and maturation of a dsDNA virus. Proceedings of the National Academy of Sciences of the United States of America. 108(4), 1355-60.(2011).
A new hydrogen-bonding potential for the design of protein-RNA interactions predicts specific contacts and discriminates decoys. Nucleic acids research. 32(17), 5147-62.(2004).
Improvement in protein functional site prediction by distinguishing structural and functional constraints on protein family evolution using computational design. Nucleic acids research. 33(18), 5861-7.(2005).
Design, activity, and structure of a highly specific artificial endonuclease. Molecular cell. 10(4), 895-905.(2002).
Automated prediction of CASP-5 structures using the Robetta server. Proteins. 53 Suppl 6, 524-33.(2003).
Ab initio methods. Methods of biochemical analysis. 44, 547-57.(2003).
Prediction of CASP6 structures using automated Robetta protocols. Proteins. 61 Suppl 7, 157-66.(2005).
Homology modeling using parametric alignment ensemble generation with consensus and energy-based model selection. Nucleic acids research. 34(17), e112.(2006).
The Challenge of Designing Scientific Discovery Games. Proceedings of the Fifth international Conference on the Foundations of Digital Games.(2010).
Predicting protein structures with a multiplayer online game. Nature. 466(7307), 756-60.(2010).