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Local interactions and the optimization of protein folding. Proteins. 29(3), 282-91.(1997).
High-resolution structural validation of the computational redesign of human U1A protein. Structure. 14(5), 847-56.(2006).
Cryo-EM model validation using independent map reconstructions.. Protein science : a publication of the Protein Society. 22(6), 865-8.(2013).
Refinement of protein structures into low-resolution density maps using rosetta. Journal of molecular biology. 392(1), 181-90.(2009).
A novel semi-biosynthetic route for artemisinin production using engineered substrate-promiscuous P450(BM3). ACS chemical biology. 4(4), 261-7.(2009).
The common structural architecture of Shigella flexneri and Salmonella typhimurium type three secretion needles.. PLoS pathogens. 9(3), e1003245.(2013).
Blind docking of pharmaceutically relevant compounds using RosettaLigand. Protein science. 18(9), 1998-2002.(2009).
RosettaLigand docking with full ligand and receptor flexibility. Journal of molecular biology. 385(2), 381-92.(2009).
Atomic accuracy in predicting and designing noncanonical RNA structure. Nature methods. 7(4), 291-4.(2010).
Prospects for de novo phasing with de novo protein models. Acta crystallographica. 65(Pt 2), 169-75.(2009).
Macromolecular modeling with rosetta. Annual review of biochemistry. 77, 363-82.(2008).
Structure prediction for CASP7 targets using extensive all-atom refinement with Rosetta@home. Proteins. 69 Suppl 8, 118-28.(2007).
Simultaneous prediction of protein folding and docking at high resolution. Proceedings of the National Academy of Sciences of the United States of America. 106(45), 18978-83.(2009).
Structural inference of native and partially folded RNA by high-throughput contact mapping. Proceedings of the National Academy of Sciences of the United States of America. 105(11), 4144-9.(2008).
Automated de novo prediction of native-like RNA tertiary structures. Proceedings of the National Academy of Sciences of the United States of America. 104(37), 14664-9.(2007).
Mis-translation of a computationally designed protein yields an exceptionally stable homodimer: implications for protein engineering and evolution. Journal of molecular biology. 362(5), 1004-24.(2006).
High-resolution structural and thermodynamic analysis of extreme stabilization of human procarboxypeptidase by computational protein design. Journal of molecular biology. 366(4), 1209-21.(2007).
A large scale test of computational protein design: folding and stability of nine completely redesigned globular proteins. Journal of molecular biology. 332(2), 449-60.(2003).
Coordinate-Space Formulation of Polymer Lattice Cluster Theory. Journal of Chemical Physics .(1993).