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Johnsen, K., O'Neill J. W., Kim D. E., Baker D., & Zhang K. Y. (2000). Crystallization and preliminary X-ray diffraction studies of mutants of B1 IgG-binding domain of protein L from Peptostreptococcus magnus. Acta crystallographica. Section D. 56(Pt 4), 506-8. Abstract Download: johnsen00A.pdf (244.36 KB)

Joachimiak, L. A., Kortemme T., Stoddard B. L., & Baker D. (2006). Computational design of a new hydrogen bond network and at least a 300-fold specificity switch at a protein-protein interface. Journal of molecular biology. 361(1), 195-208. Abstract Download: joachimiak06A.pdf (1.04 MB)

Jiang, L., Kuhlman B., Kortemme T., & Baker D. (2005). A "solvated rotamer" approach to modeling water-mediated hydrogen bonds at protein-protein interfaces. Proteins. 58(4), 893-904. Abstract Download: jiang05A.pdf (723.29 KB)

Jiang, L., Althoff E. A., Clemente F. R., Doyle L., Röthlisberger D., Zanghellini A., et al. (2008). De novo computational design of retro-aldol enzymes. Science. 319(5868), 1387-91. Abstract Download: jiang08A.pdf (629.34 KB)

Warning: Table './bakerDrupal/watchdog' is marked as crashed and should be repaired query: INSERT INTO watchdog (uid, type, message, variables, severity, link, location, referer, hostname, timestamp) VALUES (0, 'php', '%message in %file on line %line.', 'a:4:{s:6:\"%error\";s:7:\"warning\";s:8:\"%message\";s:397:\"date() [<a href=\'function.date\'>function.date</a>]: It is not safe to rely on the system\'s timezone settings. You are *required* to use the date.timezone setting or the date_default_timezone_set() function. In case you used any of those methods and you are still getting this warning, you most likely misspelled the timezone identifier. We selected \'America/Los_Angeles\' for \'PDT/-7.0/DST\' instead\";s:5:\"%file\";s:77:\"/nfs/bronfs/uwfs/hw00/d66/bakerpg/drupal/sites/all/modules/boost/boost.module\";s:5:\"%line\";i:2219;}', 3, '' in /nfs/bronfs/uwfs/hw00/d66/bakerpg/drupal/includes/database.mysqli.inc on line 128

Warning: Table './bakerDrupal/watchdog' is marked as crashed and should be repaired query: INSERT INTO watchdog (uid, type, message, variables, severity, link, location, referer, hostname, timestamp) VALUES (0, 'php', '%message in %file on line %line.', 'a:4:{s:6:\"%error\";s:7:\"warning\";s:8:\"%message\";s:397:\"date() [<a href=\'function.date\'>function.date</a>]: It is not safe to rely on the system\'s timezone settings. You are *required* to use the date.timezone setting or the date_default_timezone_set() function. In case you used any of those methods and you are still getting this warning, you most likely misspelled the timezone identifier. We selected \'America/Los_Angeles\' for \'PDT/-7.0/DST\' instead\";s:5:\"%file\";s:77:\"/nfs/bronfs/uwfs/hw00/d66/bakerpg/drupal/sites/all/modules/boost/boost.module\";s:5:\"%line\";i:2228;}', 3, '' in /nfs/bronfs/uwfs/hw00/d66/bakerpg/drupal/includes/database.mysqli.inc on line 128