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Automated prediction of domain boundaries in CASP6 targets using Ginzu and RosettaDOM. Proteins. 61 Suppl 7, 193-200.(2005).
Automated prediction of CASP-5 structures using the Robetta server. Proteins. 53 Suppl 6, 524-33.(2003).
Automated de novo prediction of native-like RNA tertiary structures. Proceedings of the National Academy of Sciences of the United States of America. 104(37), 14664-9.(2007).
Atomic accuracy in predicting and designing noncanonical RNA structure. Nature methods. 7(4), 291-4.(2010).
Assigning function to yeast proteins by integration of technologies. Molecular cell. 12(6), 1353-65.(2003).
Assessment of the optimization of affinity and specificity at protein-DNA interfaces. Nucleic acids research. 37(10), e73.(2009).
Assessment of predictions submitted for the CASP7 domain prediction category. Proteins. 69 Suppl 8, 137-51.(2007).
Assembly of protein tertiary structures from fragments with similar local sequences using simulated annealing and Bayesian scoring functions. Journal of molecular biology. 268(1), 209-25.(1997).
Analysis of anisotropic side-chain packing in proteins and application to high-resolution structure prediction. Journal of molecular biology. 342(2), 651-64.(2004).
Alternate States of Proteins Revealed by Detailed Energy Landscape Mapping. Journal of molecular biology.(2010).
Alteration of enzyme specificity by computational loop remodeling and design. Proceedings of the National Academy of Sciences of the United States of America. 106(23), 9215-20.(2009).
An alpha-helical burst in the src SH3 folding pathway. Biochemistry. 46(17), 5072-82.(2007).
Algorithm discovery by protein folding game players.. Proceedings of the National Academy of Sciences of the United States of America.(2011).
Ageneral expressionforbimolecularassociationrates withorientational constraints. Physical Chemistry B.(2002).
Advances in Rosetta Protein Structure Prediction on Massively Parallel Systems. Journal of Research and Development . 52(1-2):7-17,(2008).
Accurate protein structure modeling using sparse NMR data and homologous structure information.. Proceedings of the National Academy of Sciences of the United States of America. 109(25), 9875-80.(2012).
Accurate computer-based design of a new backbone conformation in the second turn of protein L. Journal of molecular biology. 315(3), 471-7.(2002).
Accurate automated protein NMR structure determination using unassigned NOESY data. Journal of the American Chemical Society. 132(1), 202-7.(2010).
Ab initio protein structure prediction: progress and prospects.. Annual review of biophysics and biomolecular structure. 30, 173-89.(2001).
Ab initio protein structure prediction of CASP III targets using ROSETTA. Proteins. Suppl 3, 171-6.(1999).
Ab initio modeling of the herpesvirus VP26 core domain assessed by CryoEM density. PLoS computational biology. 2(10), e146.(2006).
Ab initio methods. Methods of biochemical analysis. 44, 547-57.(2003).