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Ca2+ indicators based on computationally redesigned calmodulin-peptide pairs. Chemistry & biology. 13(5), 521-30.(2006).
CASD-NMR: critical assessment of automated structure determination by NMR. Nature methods. 6(9), 625-6.(2009).
CASP6 assessment of contact prediction. Proteins. 61 Suppl 7, 214-24.(2005).
Catalytic mechanism and performance of computationally designed enzymes for Kemp elimination. Journal of the American Chemical Society. 130(47), 15907-15.(2008).
Chain collapse can occur concomitantly with the rate-limiting step in protein folding. Nature structural biology. 6(6), 554-6.(1999).
The Challenge of Designing Scientific Discovery Games. Proceedings of the Fifth international Conference on the Foundations of Digital Games.(2010).
Characterization of the folding energy landscapes of computer generated proteins suggests high folding free energy barriers and cooperativity may be consequences of natural selection. Journal of molecular biology. 338(3), 573-83.(2004).
Characterization of the free energy spectrum of peptostreptococcal protein L. Folding & design. 2(5), 271-80.(1997).
Circularization changes the folding transition state of the src SH3 domain. Journal of molecular biology. 306(3), 555-63.(2001).
Close agreement between the orientation dependence of hydrogen bonds observed in protein structures and quantum mechanical calculations. Proceedings of the National Academy of Sciences of the United States of America. 101(18), 6946-51.(2004).
Clustering of low-energy conformations near the native structures of small proteins. Proceedings of the National Academy of Sciences of the United States of America. 95(19), 11158-62.(1998).
The common structural architecture of Shigella flexneri and Salmonella typhimurium type three secretion needles. PLoS pathogens. 9(3), e1003245.(2013).
Community-wide evaluation of methods for predicting the effect of mutations on protein-protein interactions.. Proteins. 81(11), 1980-7.(2013).
Comparative analysis of mutant tyrosine kinase chemical rescue. Biochemistry. 48(15), 3378-86.(2009).
Comparison of Quantum Mechanics and Molecular Mechanics Dimerization Energy Landscapes for Pairs of Ring-Containing Amino Acids in Proteins. Journal of Physical Chemistry B .(2004).
Computation of conformational coupling in allosteric proteins. PLoS computational biology. 5(8), e1000484.(2009).
Computation-guided backbone grafting of a discontinuous motif onto a protein scaffold. Science. 334(6054), 373-6.(2011).
Computational alanine scanning of protein-protein interfaces. Science's STKE. 2004(219), pl2.(2004).
Computational design of a new hydrogen bond network and at least a 300-fold specificity switch at a protein-protein interface. Journal of molecular biology. 361(1), 195-208.(2006).
Computational design of a pH-sensitive IgG binding protein. Proceedings of the National Academy of Sciences of the United States of America.(2013).
Computational design of a protein-based enzyme inhibitor.. Journal of molecular biology. 425(18), 3563-75.(2013).
Computational design of an enzyme catalyst for a stereoselective bimolecular Diels-Alder reaction. Science. 329(5989), 309-13.(2010).
Computational design of an unnatural amino acid dependent metalloprotein with atomic level accuracy.. Journal of the American Chemical Society. 135(36), 13393-9.(2013).
Computational Design of an α-gliadin Peptidase. Journal of the American Chemical Society. 134(50), 20513-20.(2012).
Computational design of an α-gliadin peptidase.. Journal of the American Chemical Society. 134(50), 20513-20.(2012).
Computational design of catalytic dyads and oxyanion holes for ester hydrolysis.. Journal of the American Chemical Society. 134(39), 16197-206.(2012).
Computational design of enone-binding proteins with catalytic activity for the Morita-Baylis-Hillman reaction. ACS chemical biology. 8(4), 749-57.(2013).
Computational design of high-affinity epitope scaffolds by backbone grafting of a linear epitope. Journal of molecular biology. 415(1), 175-92.(2012).
Computational design of ligand-binding proteins with high affinity and selectivity. Nature. 501(7466), 212-6.(2013).
Computational design of novel protein binders and experimental affinity maturation. Methods in enzymology. 523, 1-19.(2013).
Computational design of orthogonal nucleoside kinases. Chemical communications. 46(46), 8803-5.(2010).
Computational design of protein-protein interactions. Current opinion in chemical biology. 8(1), 91-7.(2004).
Computational design of proteins targeting the conserved stem region of influenza hemagglutinin. Science. 332(6031), 816-21.(2011).
Computational enzyme design. Angewandte Chemie (International ed. in English). 52(22), 5700-25.(2013).
Computational redesign of a mononuclear zinc metalloenzyme for organophosphate hydrolysis. Nature chemical biology.(2012).
Computational redesign of endonuclease DNA binding and cleavage specificity. Nature. 441(7093), 656-9.(2006).
Computational redesign of protein-protein interaction specificity. Nature structural & molecular biology. 11(4), 371-9.(2004).
Computational reprogramming of homing endonuclease specificity at multiple adjacent base pairs. Nucleic acids research. 38(16), 5601-8.(2010).
Computational thermostabilization of an enzyme. Science. 308(5723), 857-60.(2005).
Computationally designed libraries for rapid enzyme stabilization.. Protein engineering, design & selection : PEDS. 27(2), 49-58.(2014).
Computer-based redesign of a protein folding pathway.. Nature structural biology. 8(7), 602-5.(2001).
Conservation, variability and the modeling of active protein kinases. PloS one. 2(10), e982.(2007).
Conserved residue clustering and protein structure prediction. Proteins. 52(2), 225-35.(2003).
A conserved structural motif mediates formation of the periplasmic rings in the type III secretion system. Nature structural & molecular biology. 16(5), 468-76.(2009).
Consistent blind protein structure generation from NMR chemical shift data. Proceedings of the National Academy of Sciences of the United States of America. 105(12), 4685-90.(2008).
Contact order and ab initio protein structure prediction. Protein science. 11(8), 1937-44.(2002).
Contact order revisited: influence of protein size on the folding rate. Protein science. 12(9), 2057-62.(2003).
Contact order, transition state placement and the refolding rates of single domain proteins. Journal of molecular biology. 277(4), 985-94.(1998).
Contrasting roles for symmetrically disposed beta-turns in the folding of a small protein. Journal of molecular biology. 274(4), 588-96.(1997).
Contributions of solvent-solvent hydrogen bonding and van der Waals interactions to the attraction between methane molecules in water. Biophysical chemistry. 71(2-3), 199-204.(1998).
Convergent mechanisms for recognition of divergent cytokines by the shared signaling receptor gp130. Molecular cell. 12(3), 577-89.(2003).
Conversion of monomeric protein L to an obligate dimer by computational protein design. Proceedings of the National Academy of Sciences of the United States of America. 98(19), 10687-91.(2001).
Cooperative hydrogen bonding in amyloid formation. Protein science. 16(4), 761-4.(2007).
Coordinate-Space Formulation of Polymer Lattice Cluster Theory. Journal of Chemical Physics .(1993).
Coupled prediction of protein secondary and tertiary structure. Proceedings of the National Academy of Sciences of the United States of America. 100(21), 12105-10.(2003).
Critical role of beta-hairpin formation in protein G folding. Nature structural biology. 7(8), 669-73.(2000).
Cryo-EM model validation using independent map reconstructions. Protein science : a publication of the Protein Society. 22(6), 865-8.(2013).
Crystal structure of a monomeric retroviral protease solved by protein folding game players. Nature structural & molecular biology. 18(10), 1175-7.(2011).
Crystal structure of the HSV-1 Fc receptor bound to Fc reveals a mechanism for antibody bipolar bridging. PLoS biology. 4(6), e148.(2006).
Crystal structure of XMRV protease differs from the structures of other retropepsins. Nature structural & molecular biology. 18(2), 227-9.(2011).
Crystal structures and increased stabilization of the protein G variants with switched folding pathways NuG1 and NuG2. Protein science. 11(12), 2924-31.(2002).
Crystallization and preliminary X-ray diffraction studies of mutants of B1 IgG-binding domain of protein L from Peptostreptococcus magnus. Acta crystallographica. Section D. 56(Pt 4), 506-8.(2000).