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Cho, H. D., Sood V. D., Baker D., & Weiner A. M. (2008). On the role of a conserved, potentially helix-breaking residue in the tRNA-binding alpha-helix of archaeal CCA-adding enzymes. RNA. 14(7), 1284-9. Abstract Download: cho08A.pdf (209.43 KB)

Whitehead, T. A., Chevalier A., Song Y., Dreyfus C., Fleishman S. J., De Mattos C., et al. (2012). Optimization of affinity, specificity and function of designed influenza inhibitors using deep sequencing. Nature biotechnology. Abstract Download: whitehead12A.pdf (1.38 MB)

Khersonsky, O., Röthlisberger D., Wollacott A. M., Murphy P., Dym O., Albeck S., et al. (2011). Optimization of the In-Silico-Designed Kemp Eliminase KE70 by Computational Design and Directed Evolution. Journal of molecular biology. 407(3), 391-412. Abstract Download: khersonsky11A.pdf (1.77 MB)

Kortemme, T., Morozov A. V., & Baker D. (2003). An orientation-dependent hydrogen bonding potential improves prediction of specificity and structure for proteins and protein-protein complexes. Journal of molecular biology. 326(4), 1239-59. Abstract Download: kortemmea03A.pdf (2.13 MB)

Warning: Table './bakerDrupal/watchdog' is marked as crashed and should be repaired query: INSERT INTO watchdog (uid, type, message, variables, severity, link, location, referer, hostname, timestamp) VALUES (0, 'php', '%message in %file on line %line.', 'a:4:{s:6:\"%error\";s:7:\"warning\";s:8:\"%message\";s:397:\"date() [<a href=\'function.date\'>function.date</a>]: It is not safe to rely on the system\'s timezone settings. You are *required* to use the date.timezone setting or the date_default_timezone_set() function. In case you used any of those methods and you are still getting this warning, you most likely misspelled the timezone identifier. We selected \'America/Los_Angeles\' for \'PDT/-7.0/DST\' instead\";s:5:\"%file\";s:77:\"/nfs/bronfs/uwfs/hw00/d66/bakerpg/drupal/sites/all/modules/boost/boost.module\";s:5:\"%line\";i:2219;}', 3, '' in /nfs/bronfs/uwfs/hw00/d66/bakerpg/drupal/includes/database.mysqli.inc on line 128

Warning: Table './bakerDrupal/watchdog' is marked as crashed and should be repaired query: INSERT INTO watchdog (uid, type, message, variables, severity, link, location, referer, hostname, timestamp) VALUES (0, 'php', '%message in %file on line %line.', 'a:4:{s:6:\"%error\";s:7:\"warning\";s:8:\"%message\";s:397:\"date() [<a href=\'function.date\'>function.date</a>]: It is not safe to rely on the system\'s timezone settings. You are *required* to use the date.timezone setting or the date_default_timezone_set() function. In case you used any of those methods and you are still getting this warning, you most likely misspelled the timezone identifier. We selected \'America/Los_Angeles\' for \'PDT/-7.0/DST\' instead\";s:5:\"%file\";s:77:\"/nfs/bronfs/uwfs/hw00/d66/bakerpg/drupal/sites/all/modules/boost/boost.module\";s:5:\"%line\";i:2228;}', 3, '' in /nfs/bronfs/uwfs/hw00/d66/bakerpg/drupal/includes/database.mysqli.inc on line 128