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Sampling bottlenecks in de novo protein structure prediction. Journal of molecular biology. 393(1), 249-60.(2009).
Scientific benchmarks for guiding macromolecular energy function improvement.. Methods in enzymology. 523, 109-43.(2013).
Searching for folded proteins in vitro and in silico. European journal of biochemistry. 271(9), 1615-22.(2004).
The sequences of small proteins are not extensively optimized for rapid folding by natural selection. Proceedings of the National Academy of Sciences of the United States of America. 95(9), 4982-6.(1998).
A simple physical model for binding energy hot spots in protein-protein complexes. Proceedings of the National Academy of Sciences of the United States of America. 99(22), 14116-21.(2002).
A simple physical model for the prediction and design of protein-DNA interactions. Journal of molecular biology. 344(1), 59-70.(2004).
Simple physical models connect theory and experiment in protein folding kinetics. Journal of molecular biology. 322(2), 463-76.(2002).
Simplified proteins: minimalist solutions to the 'protein folding problem'.. Current opinion in structural biology. 8(1), 80-5.(1998).
Simultaneous prediction of protein folding and docking at high resolution. Proceedings of the National Academy of Sciences of the United States of America. 106(45), 18978-83.(2009).
The single helix in protein L is largely disrupted at the rate-limiting step in folding. Journal of molecular biology. 284(3), 807-15.(1998).
Single-site mutations induce 3D domain swapping in the B1 domain of protein L from Peptostreptococcus magnus. Structure. 9(11), 1017-27.(2001).
Solution structure of a minor and transiently formed state of a T4 lysozyme mutant. Nature. 477(7362), 111-4.(2011).
Strand-loop-strand motifs: prediction of hairpins and diverging turns in proteins. Proteins. 54(2), 282-8.(2004).
Structural analyses of covalent enzyme-substrate analog complexes reveal strengths and limitations of de novo enzyme design. Journal of molecular biology. 415(3), 615-25.(2012).
Structural and energetic basis of folded-protein transport by the FimD usher.. Nature. 496(7444), 243-6.(2013).
Structural and kinetic characterization of the simplified SH3 domain FP1. Protein science. 12(4), 776-83.(2003).
Structural basis for gating charge movement in the voltage sensor of a sodium channel. Proceedings of the National Academy of Sciences of the United States of America. 109(2), E93-102.(2012).
Structural basis for scaffolding-mediated assembly and maturation of a dsDNA virus. Proceedings of the National Academy of Sciences of the United States of America. 108(4), 1355-60.(2011).
Structural genomics of pathogenic protozoa: an overview. Methods in molecular biology. 426, 497-513.(2008).
Structural inference of native and partially folded RNA by high-throughput contact mapping. Proceedings of the National Academy of Sciences of the United States of America. 105(11), 4144-9.(2008).
Structural transitions in the protein L denatured state ensemble. Biochemistry. 38(48), 15927-35.(1999).
Structure of a putative BenF-like porin from Pseudomonas fluorescens Pf-5 at 2.6 A resolution. Proteins. 78(14), 3056-62.(2010).
The structure of a receptor with two associating transmembrane domains on the cell surface: integrin alphaIIbbeta3. Molecular cell. 34(2), 234-49.(2009).
Structure of the Ultra-High-Affinity Colicin E2 DNase-Im2 Complex. Journal of molecular biology.(2012).
Structure prediction for CASP7 targets using extensive all-atom refinement with Rosetta@home. Proteins. 69 Suppl 8, 118-28.(2007).
Structure prediction for CASP8 with all-atom refinement using Rosetta. Proteins. 77 Suppl 9, 89-99.(2009).
Structure similarity measure with penalty for close non-equivalent residues. Bioinformatics. 25(10), 1259-63.(2009).
The structure, dynamics, and energetics of protein adsorption-lessons learned from adsorption of statherin to hydroxyapatite. Magnetic resonance in chemistry. 45(S1), S32-S47.(2008).
Structures of the B1 domain of protein L from Peptostreptococcus magnus with a tyrosine to tryptophan substitution.. Acta crystallographica. Section D, Biological crystallography. 57(Pt 4), 480-7.(2001).
A surprising simplicity to protein folding. Nature. 405(6782), 39-42.(2000).
A synthetic homing endonuclease-based gene drive system in the human malaria mosquito. Nature. 473(7346), 212-5.(2011).