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Primary Publication

This publication represents a primary interest of the Baker lab

Ab initio protein structure prediction of CASP III targets using ROSETTA

Simons, K. T., Bonneau R., Ruczinski I., & Baker D. (1999). Ab initio protein structure prediction of CASP III targets using ROSETTA. Proteins. Suppl 3, 171-6.

Primary Publication

PubMed

Hierarchy of structure loss in MD simulations of src SH3 domain unfolding

Tsai, J., Levitt M., & Baker D. (1999). Hierarchy of structure loss in MD simulations of src SH3 domain unfolding. Journal of molecular biology. 291(1), 215-25.

Primary Publication

Three-dimensional structures and contexts associated with recurrent amino acid sequence patterns

Han, K. F., Bystroff C., & Baker D. (1997). Three-dimensional structures and contexts associated with recurrent amino acid sequence patterns. Protein science. 6(7), 1587-90.

Primary Publication

A desolvation barrier to hydrophobic cluster formation may contribute to the rate-limiting step in protein folding

Rank, J. A., & Baker D. (1997). A desolvation barrier to hydrophobic cluster formation may contribute to the rate-limiting step in protein folding. Protein science. 6(2), 347-54.

Primary Publication

Contrasting roles for symmetrically disposed beta-turns in the folding of a small protein

Gu, H., Kim D. E., & Baker D. (1997). Contrasting roles for symmetrically disposed beta-turns in the folding of a small protein. Journal of molecular biology. 274(4), 588-96.

Primary Publication

Folding dynamics of the src SH3 domain

Grantcharova, V. P., & Baker D. (1997). Folding dynamics of the src SH3 domain. Biochemistry. 36(50), 15685-92.

Primary Publication

Local interactions and the optimization of protein folding

Doyle, R., Simons K., Qian H., & Baker D. (1997). Local interactions and the optimization of protein folding. Proteins. 29(3), 282-91.

Primary Publication

Blind predictions of local protein structure in CASP2 targets using the I-sites library

Bystroff, C., & Baker D. (1997). Blind predictions of local protein structure in CASP2 targets using the I-sites library. Proteins. Suppl 1, 167-71.

Primary Publication

Protein folding kinetics exhibit an Arrhenius temperature dependence when corrected for the temperature dependence of protein stability

Scalley, M. L., & Baker D. (1997). Protein folding kinetics exhibit an Arrhenius temperature dependence when corrected for the temperature dependence of protein stability. Proceedings of the National Academy of Sciences of the United States of America. 94(20), 10636-40.

Primary Publication

Assembly of protein tertiary structures from fragments with similar local sequences using simulated annealing and Bayesian scoring functions

Simons, K. T., Kooperberg C., Huang E., & Baker D. (1997). Assembly of protein tertiary structures from fragments with similar local sequences using simulated annealing and Bayesian scoring functions. Journal of molecular biology. 268(1), 209-25.

Primary Publication

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