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Primary Publication

This publication represents a primary interest of the Baker lab

Computational design of proteins targeting the conserved stem region of influenza hemagglutinin

Fleishman, S. J., Whitehead T. A., Ekiert D. C., Dreyfus C., Corn J. E., Strauch E. - M., et al. (2011). Computational design of proteins targeting the conserved stem region of influenza hemagglutinin. Science. 332(6031), 816-21.

Primary Publication

Improved molecular replacement by density- and energy-guided protein structure optimization

DiMaio, F., Terwilliger T. C., Read R. J., Wlodawer A., Oberdorfer G., Wagner U., et al. (2011). Improved molecular replacement by density- and energy-guided protein structure optimization. Nature.

Primary Publication

The Challenge of Designing Scientific Discovery Games

Cooper, S., Treuille A., Barbero J., Leaver-Fay A., Tuite K., Khatib F., et al. (2010). The Challenge of Designing Scientific Discovery Games. Proceedings of the Fifth international Conference on the Foundations of Digital Games.

Primary Publication

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Atomic accuracy in predicting and designing noncanonical RNA structure

Das, R., Karanicolas J., & Baker D. (2010). Atomic accuracy in predicting and designing noncanonical RNA structure. Nature methods. 7(4), 291-4.

Primary Publication

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Role of conformational sampling in computing mutation-induced changes in protein structure and stability

Kellogg, E. H., Leaver-Fay A., & Baker D. (2011). Role of conformational sampling in computing mutation-induced changes in protein structure and stability. Proteins. 79(3), 830-8.

Primary Publication

A De Novo Protein Binding Pair By Computational Design and Directed Evolution

Karanicolas, J., Corn J. E., Chen I., Joachimiak L. A., Dym O., Peck S. H., et al. (2011). A De Novo Protein Binding Pair By Computational Design and Directed Evolution. Molecular cell.

Primary Publication

Restricted sidechain plasticity in the structures of native proteins and complexes

Fleishman, S. J., Khare S. D., Koga N., & Baker D. (2011). Restricted sidechain plasticity in the structures of native proteins and complexes. Protein science. 20(4), 753-7.

Primary Publication

Determination of the Structures of Symmetric Protein Oligomers from NMR Chemical Shifts and Residual Dipolar Couplings

Sgourakis, N. G., Lange O. F., DiMaio F., André I., Fitzkee N. C., Rossi P., et al. (2011). Determination of the Structures of Symmetric Protein Oligomers from NMR Chemical Shifts and Residual Dipolar Couplings. Journal of the American Chemical Society.

Primary Publication

Protein transport to the vacuole and receptor-mediated endocytosis by clathrin heavy chain-deficient yeast

Payne, G. S., Baker D., van Tuinen E., & Schekman R. (1988). Protein transport to the vacuole and receptor-mediated endocytosis by clathrin heavy chain-deficient yeast. The Journal of cell biology. 106(5), 1453-61.

Primary Publication

Reconstitution of SEC gene product-dependent intercompartmental protein transport

Baker, D., Hicke L., Rexach M., Schleyer M., & Schekman R. (1988). Reconstitution of SEC gene product-dependent intercompartmental protein transport. Cell. 54(3), 335-44.

Primary Publication