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Collaborative Publication

This publication represents a collaboration with the Baker lab

Computation-guided backbone grafting of a discontinuous motif onto a protein scaffold

Azoitei, M. L., Correia B. E., Ban Y. - E. A., Carrico C., Kalyuzhniy O., Chen L., et al. (2011). Computation-guided backbone grafting of a discontinuous motif onto a protein scaffold. Science. 334(6054), 373-6.

Collaborative Publication

Solution structure of a minor and transiently formed state of a T4 lysozyme mutant

Bouvignies, G., Vallurupalli P., Hansen F. D., Correia B. E., Lange O., Bah A., et al. (2011). Solution structure of a minor and transiently formed state of a T4 lysozyme mutant. Nature. 477(7362), 111-4.

Collaborative Publication

Structure-based design of non-natural amino-acid inhibitors of amyloid fibril formation

Sievers, S. A., Karanicolas J., Chang H. W., Zhao A., Jiang L., Zirafi O., et al. (2011). Structure-based design of non-natural amino-acid inhibitors of amyloid fibril formation. Nature.

Collaborative Publication

A synthetic homing endonuclease-based gene drive system in the human malaria mosquito

Windbichler, N., Menichelli M., Papathanos P. A., Thyme S. B., Li H., Ulge U. Y., et al. (2011). A synthetic homing endonuclease-based gene drive system in the human malaria mosquito. Nature. 473(7346), 212-5.

Collaborative Publication

ROSETTA3: an object-oriented software suite for the simulation and design of macromolecules

Leaver-Fay, A., Tyka M., Lewis S. M., Lange O. F., Thompson J., Jacak R., et al. (2011). ROSETTA3: an object-oriented software suite for the simulation and design of macromolecules. Methods in enzymology. 487, 545-74.

Collaborative Publication

Structural basis for scaffolding-mediated assembly and maturation of a dsDNA virus

Chen, D. - H., Baker M. L., Hryc C. F., DiMaio F., Jakana J., Wu W., et al. (2011). Structural basis for scaffolding-mediated assembly and maturation of a dsDNA virus. Proceedings of the National Academy of Sciences of the United States of America. 108(4), 1355-60.

Collaborative Publication

Heterologous epitope-scaffold prime:boosting immuno-focuses B cell responses to the HIV-1 gp41 2F5 neutralization determinant

Guenaga, J., Dosenovic P., Ofek G., Baker D., Schief W. R., Kwong P. D., et al. (2011). Heterologous epitope-scaffold prime:boosting immuno-focuses B cell responses to the HIV-1 gp41 2F5 neutralization determinant. PloS one. 6(1), e16074.

Collaborative Publication

Comprehensive computational design of mCreI homing endonuclease cleavage specificity for genome engineering

Ulge, U. Y., Baker D. A., & Monnat R. J. (2011). Comprehensive computational design of mCreI homing endonuclease cleavage specificity for genome engineering. Nucleic acids research.

Collaborative Publication

Crystal structure of XMRV protease differs from the structures of other retropepsins

Li, M., DiMaio F., Zhou D., Gustchina A., Lubkowski J., Dauter Z., et al. (2011). Crystal structure of XMRV protease differs from the structures of other retropepsins. Nature structural & molecular biology. 18(2), 227-9.

Collaborative Publication

Optimization of the In-Silico-Designed Kemp Eliminase KE70 by Computational Design and Directed Evolution

Khersonsky, O., Röthlisberger D., Wollacott A. M., Murphy P., Dym O., Albeck S., et al. (2011). Optimization of the In-Silico-Designed Kemp Eliminase KE70 by Computational Design and Directed Evolution. Journal of molecular biology. 407(3), 391-412.

Collaborative Publication