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Collaborative Publication

This publication represents a collaboration with the Baker lab

Assessment of predictions submitted for the CASP7 domain prediction category

Tress, M., Cheng J., Baldi P., Joo K., Lee J., Seo J. - H., et al. (2007). Assessment of predictions submitted for the CASP7 domain prediction category. Proteins. 69 Suppl 8, 137-51.

Collaborative Publication

Rescue of degradation-prone mutants of the FK506-rapamycin binding (FRB) protein with chemical ligands

Stankunas, K., Bayle H. J., Havranek J. J., Wandless T. J., Baker D., Crabtree G. R., et al. (2007). Rescue of degradation-prone mutants of the FK506-rapamycin binding (FRB) protein with chemical ligands. Chembiochem : a European journal of chemical biology. 8(10), 1162-9.

Collaborative Publication

Dissecting muscle and neuronal disorders in a Drosophila model of muscular dystrophy

Shcherbata, H. R., Yatsenko A. S., Patterson L., Sood V. D., Nudel U., Yaffe D., et al. (2007). Dissecting muscle and neuronal disorders in a Drosophila model of muscular dystrophy. The EMBO journal. 26(2), 481-93.

Collaborative Publication

An alpha-helical burst in the src SH3 folding pathway

Li, J., Shinjo M., Matsumura Y., Morita M., Baker D., Ikeguchi M., et al. (2007). An alpha-helical burst in the src SH3 folding pathway. Biochemistry. 46(17), 5072-82.

Collaborative Publication

Mutations designed to destabilize the receptor-bound conformation increase MICA-NKG2D association rate and affinity

Lengyel, C. S. E., Willis L. J., Mann P., Baker D., Kortemme T., Strong R. K., et al. (2007). Mutations designed to destabilize the receptor-bound conformation increase MICA-NKG2D association rate and affinity. The Journal of biological chemistry. 282(42), 30658-66.

Collaborative Publication

Conservation, variability and the modeling of active protein kinases

Knight, J. D. R., Qian B., Baker D., & Kothary R. (2007). Conservation, variability and the modeling of active protein kinases. PloS one. 2(10), e982.

Collaborative Publication

Advances in Rosetta Protein Structure Prediction on Massively Parallel Systems

S, R., B Q., D B., & RC W. (2008). Advances in Rosetta Protein Structure Prediction on Massively Parallel Systems. Journal of Research and Development . 52(1-2):7-17,

Collaborative Publication

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Improving physical realism, stereochemistry, and side-chain accuracy in homology modeling: Four approaches that performed well in CASP8

Krieger, E., Joo K., Lee J., Lee J., Raman S., Thompson J., et al. (2009). Improving physical realism, stereochemistry, and side-chain accuracy in homology modeling: Four approaches that performed well in CASP8. Proteins. 77 Suppl 9, 114-22.

Collaborative Publication

4e10 epitope-scaffolds mimic the antibody-bound epitope conformation and block neutralization by sera from rare HIV+ individuals

Ban, Y. A., Correia B. E., Holmes M., Boni E., Sather N., Bretz C., et al. (2009). 4e10 epitope-scaffolds mimic the antibody-bound epitope conformation and block neutralization by sera from rare HIV+ individuals. Retrovirology. 6,

Collaborative Publication

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CASD-NMR: critical assessment of automated structure determination by NMR

Rosato, A., Bagaria A., Baker D., Bardiaux B., Cavalli A., Doreleijers J. F., et al. (2009). CASD-NMR: critical assessment of automated structure determination by NMR. Nature methods. 6(9), 625-6.

Collaborative Publication

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