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Collaborative Publication

This publication represents a collaboration with the Baker lab

Understanding protein hydrogen bond formation with kinetic H/D amide isotope effects

Krantz, B. A., Srivastava A. K., Nauli S., Baker D., Sauer R. T., & Sosnick T. R. (2002). Understanding protein hydrogen bond formation with kinetic H/D amide isotope effects. Nature structural biology. 9(6), 458-63.

Collaborative Publication

Design, activity, and structure of a highly specific artificial endonuclease

Chevalier, B. S., Kortemme T., Chadsey M. S., Baker D., Monnat R. J., & Stoddard B. L. (2002). Design, activity, and structure of a highly specific artificial endonuclease. Molecular cell. 10(4), 895-905.

Collaborative Publication

A new hydrogen-bonding potential for the design of protein-RNA interactions predicts specific contacts and discriminates decoys

Chen, Y., Kortemme T., Robertson T., Baker D., & Varani G. (2004). A new hydrogen-bonding potential for the design of protein-RNA interactions predicts specific contacts and discriminates decoys. Nucleic acids research. 32(17), 5147-62.

Collaborative Publication

Voltage sensor conformations in the open and closed states in ROSETTA structural models of K(+) channels

Yarov-Yarovoy, V., Baker D., & Catterall W. A. (2006). Voltage sensor conformations in the open and closed states in ROSETTA structural models of K(+) channels. Proceedings of the National Academy of Sciences of the United States of America. 103(19), 7292-7.

Collaborative Publication

The 3D profile method for identifying fibril-forming segments of proteins

Thompson, M. J., Sievers S. A., Karanicolas J., Ivanova M. I., Baker D., & Eisenberg D. (2006). The 3D profile method for identifying fibril-forming segments of proteins. Proceedings of the National Academy of Sciences of the United States of America. 103(11), 4074-8.

Collaborative Publication

High-resolution structural validation of the computational redesign of human U1A protein

Dobson, N., Dantas G., Baker D., & Varani G. (2006). High-resolution structural validation of the computational redesign of human U1A protein. Structure. 14(5), 847-56.

Collaborative Publication

On the role of a conserved, potentially helix-breaking residue in the tRNA-binding alpha-helix of archaeal CCA-adding enzymes

Cho, H. D., Sood V. D., Baker D., & Weiner A. M. (2008). On the role of a conserved, potentially helix-breaking residue in the tRNA-binding alpha-helix of archaeal CCA-adding enzymes. RNA. 14(7), 1284-9.

Collaborative Publication

Catalytic mechanism and performance of computationally designed enzymes for Kemp elimination

Alexandrova, A. N., Röthlisberger D., Baker D., & Jorgensen W. L. (2008). Catalytic mechanism and performance of computationally designed enzymes for Kemp elimination. Journal of the American Chemical Society. 130(47), 15907-15.

Collaborative Publication

The structure of a receptor with two associating transmembrane domains on the cell surface: integrin alphaIIbbeta3

Zhu, J., Luo B. - H., Barth P., Schonbrun J., Baker D., & Springer T. A. (2009). The structure of a receptor with two associating transmembrane domains on the cell surface: integrin alphaIIbbeta3. Molecular cell. 34(2), 234-49.

Collaborative Publication

De novo protein structure generation from incomplete chemical shift assignments

Shen, Y., Vernon R., Baker D., & Bax A. (2009). De novo protein structure generation from incomplete chemical shift assignments. Journal of biomolecular NMR. 43(2), 63-78.

Collaborative Publication

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