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Collaborative Publication

This publication represents a collaboration with the Baker lab

Structure similarity measure with penalty for close non-equivalent residues

Sadreyev, R. I., Shi S. Y., Baker D., & Grishin N. V. (2009). Structure similarity measure with penalty for close non-equivalent residues. Bioinformatics. 25(10), 1259-63.

Collaborative Publication

Improving NMR protein structure quality by Rosetta refinement: a molecular replacement study

Ramelot, T. A., Raman S., Kuzin A. P., Xiao R., Ma L. - C., Acton T. B., et al. (2009). Improving NMR protein structure quality by Rosetta refinement: a molecular replacement study. Proteins. 75(1), 147-67.

Collaborative Publication

Rationally designed integrin beta3 mutants stabilized in the high affinity conformation

Luo, B. - H., Karanicolas J., Harmacek L. D., Baker D., & Springer T. A. (2009). Rationally designed integrin beta3 mutants stabilized in the high affinity conformation. The Journal of biological chemistry. 284(6), 3917-24.

Collaborative Publication

Computation of conformational coupling in allosteric proteins

Kidd, B. A., Baker D., & Thomas W. E. (2009). Computation of conformational coupling in allosteric proteins. PLoS computational biology. 5(8), e1000484.

Collaborative Publication

A vast repertoire of Dscam binding specificities arises from modular interactions of variable Ig domains

Wojtowicz, W. M., Wu W., Andre I., Qian B., Baker D., & Zipursky L. S. (2007). A vast repertoire of Dscam binding specificities arises from modular interactions of variable Ig domains. Cell. 130(6), 1134-45.

Collaborative Publication

Protein-DNA binding specificity predictions with structural models

Morozov, A. V., Havranek J. J., Baker D., & Siggia E. D. (2005). Protein-DNA binding specificity predictions with structural models. Nucleic acids research. 33(18), 5781-98.

Collaborative Publication

Contact order revisited: influence of protein size on the folding rate

Ivankov, D. N., Garbuzynskiy S. O., Alm E., Plaxco K. W., Baker D., & Finkelstein A. V. (2003). Contact order revisited: influence of protein size on the folding rate. Protein science. 12(9), 2057-62.

Collaborative Publication

Symmetry recognizing asymmetry: analysis of the interactions between the C-type lectin-like immunoreceptor NKG2D and MHC class I-like ligands

McFarland, B. J., Kortemme T., Yu S. F., Baker D., & Strong R. K. (2003). Symmetry recognizing asymmetry: analysis of the interactions between the C-type lectin-like immunoreceptor NKG2D and MHC class I-like ligands. Structure. 11(4), 411-22.

Collaborative Publication

The effects of mutations on motions of side-chains in protein L studied by 2H NMR dynamics and scalar couplings

Millet, O., Mittermaier A., Baker D., & Kay L. E. (2003). The effects of mutations on motions of side-chains in protein L studied by 2H NMR dynamics and scalar couplings. Journal of molecular biology. 329(3), 551-63.

Collaborative Publication

Post-translational modification of the N-terminal His tag interferes with the crystallization of the wild-type and mutant SH3 domains from chicken src tyrosine kinase

Kim, K. M., Yi E. C., Baker D., & Zhang K. Y. (2001). Post-translational modification of the N-terminal His tag interferes with the crystallization of the wild-type and mutant SH3 domains from chicken src tyrosine kinase. Acta crystallographica. Section D. 57(Pt 5), 759-62.

Collaborative Publication

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