software_setup
====== Differences ====== This shows you the differences between two versions of the page.
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software_setup [2016/09/12 21:03] bdelab |
software_setup [2019/05/15 23:14] (current) thclark [Psychtoolbox for Matlab] |
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| <code> | <code> | ||
| cd ~/git | cd ~/git | ||
| - | git clone https://github.com/jyeatman/AFQ.git | + | git clone https://github.com/yeatmanlab/AFQ.git |
| </code> | </code> | ||
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| ====Anaconda==== | ====Anaconda==== | ||
| - | Each user should have anaconda set up to manage their Python packages. Do this before installing nibabel and dipy. Anaconda will manage versions and dependencies for each user separately. Each install will be specific to the user that installs it. Do not install as root, as you will deny yourself privileges to your own directory. You must restart your terminal session after install before using Python or the conda command. See instructions here: https://www.continuum.io/downloads | + | Each user should have anaconda set up to manage their Python packages. **All code for REDCap was written using Python3.** Do this before installing nibabel and dipy. Anaconda will manage versions and dependencies for each user separately. Each install will be specific to the user that installs it. Do not install as root, as you will deny yourself privileges to your own directory. You must restart your terminal session after install before using Python or the conda command. See instructions here: https://www.continuum.io/downloads |
| Line 102: | Line 102: | ||
| <code> | <code> | ||
| cd ~/Downloads | cd ~/Downloads | ||
| - | sudo tar -C /usr/local -xzvf freesurfer-Linux-centos6_x86_64-stable-pub-v5.3.0.tar.gz | + | sudo tar -C /usr/local -xzvf freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0.tar.gz |
| </code> | </code> | ||
| You'll need to register [[https://surfer.nmr.mgh.harvard.edu/registration.html|here]]. The registration e-mail will tell you which text to copy into a new file, which you can create/edit by | You'll need to register [[https://surfer.nmr.mgh.harvard.edu/registration.html|here]]. The registration e-mail will tell you which text to copy into a new file, which you can create/edit by | ||
| Line 144: | Line 144: | ||
| ptb3-matlab | ptb3-matlab | ||
| </code> | </code> | ||
| + | |||
software_setup.1473714206.txt.gz ยท Last modified: 2016/09/12 21:03 by bdelab
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