====Organize the subject's data====
Put raw data into:
<code>subjid/date/raw</code>
Hereafter referred to as the session directory.\\
Make event files (parfiles) and put them in
<code>subjid/date/Stimuli/parfiles</code>

====Initialize an mrVista session====
In a MATLAB terminal change to the session directory and open mrInit
<code>mrInit</code>
Add files to mrVista session\\
{{wiki:mrInit.png?400}}\\
Fill in the session description\\
{{wiki:mrInit_SessionDesc.png?400}}

====Open Inplane view====
<code>mrVista</code>
{{wiki:Inplaneview.png?400}}\\
And run motion correction
<code>Analysis -> Motion Compensation -> Within + Between Scan</code>

====Fit GLM====
First associate a parfile with each scan and then group all the MotionComp scans so that the GLM is fit to all of them
<code>GLM -> Assign Parfiles to Scan
GLM -> Grouping -> Group Scans
GLM -> Apply CLM/Contrast New Code</code>
In the GLM window that comes up set the HRF to SPM Difference of gammas and set the number of TRs (in our case 8) and detrend option to Quadratic.