data_organization

MRI
Anatomy
Freesurfer

In the server, the nomenclature for file naming is as follows. This will allow for ease in adapting to the naming structures within Freesurfer, but also will provide a stable system by which we can keep all of the longitudinal data organized and clear.

MRI

Within /mnt/diskArray/projects/MRI:

NLR_###_FL—Parent
- YYYYMMDD—Scan Date
  - *.PAR—Header
  - *.REC—Image file
  - *.nii—Converted nifty images
  - *MSE.nii.gz—Root mean squared image

Anatomy

Within /mnt/diskArray/projects/anatomy:

NLR_###_FL
- t1_acpc.nii.gz—AC-PC aligned, longitudinal average
NLR_###_FL_MR#
- t1_acpc.nii.gz—AC-PC aligned, individual scan

Freesurfer

Within /mnt/diskArray/projects/freesurfer:

NLR_###_FL_MR#—Individual Segmentation
NLR_###_FL_MR#.long.NLR_###_FL_MRbase—Longitudinal base comp for ea scan
NLR_###_FL_MRbase—Base average segmentation
qdec—Longitudinal data storage
- long.qdec.table.dat—data table

Table of Contents

MRI

Anatomy

Freesurfer