:: Publications ::                    List of Recent Publications

Publications and Invited Talks

Langmuir, Jun, 2012 Appl Envir Microbiol, Apr, 2012 ACS Nano, Feb, 2012 Gene Dev., Jan, 2012 Adv. Funct. Mater., Aug, 2010 Angew. Chem., Jun, 2009 Adv. Mater., Jan, 2009 MRS Bulletin, May, 2008 Nat. Mater., Sep., 2003
  2012
71. M. Gungormus, E. E. Oren, J. A. Horst, H. Fong, M. Hnilova, M. J. Somerman, M. L Snead, R. Samudrala, C. Tamerler and M. Sarikaya, "Cementomimetics - constructing a cementum-like biomineralized microlayer via amelogenin-derived peptides," Inter. J. Oral Sci., 4, 69-771 (2012)
70. D. Khatayevich, C. R. So, Y. Hayamizu, C. Gresswell, and M. Sarikaya, "Controlling the Surface Chemistry of Graphite by Engineered Self-Assembled Peptides," Langmuir, 28 (23) 8589-8593 (2012). (PDF)
69. S. Donatan, M. Sarikaya, C. Tamerler, and M. Urgen, "Effect of solid surface charge on the binding behaviour of a metal-binding peptide," J. R. Soc. Interface, DOI: 10.1098/rsif.2012.0060 (2012). (PDF)
68. R. Hall Sedlak, M. Hnilova, C. Grosh, H. Fong, F. Baneyx, D. Schwartz, M. Sarikaya, C. Tamerler, and B. Traxler, “An engineered Escherichia coli silver-binding periplasmic protein promotes silver tolerance,” Appl. Envir. Microbiol., 78 (7) 2289-2296 (2012). (PDF)
67. M. Hnilova, C. R. So, E. E. Oren, B. R. Wilson, T. Kacar, C. Tamerler, and M. Sarikaya,”Peptide-Directed Co-Assembly of Nanoprobes on Multimaterial Patterned Solid Surfaces,” DOI: 10.1039/c2sm06426j, Soft Matter, (2012). (PDF)
66. C. R. So, Y. Hayamizu, H. Yazici, C. Gresswell, D. Khatayevich, C. Tamerler, and M. Sarikaya, “Controlling Self Assembly of Engineered Peptides on Graphite by Rational Mutation,” ACS Nano, 6 (2) 1648-1656 (2012). (PDF)
65. T. R. Page, Y. Hayamizu, C. R. So, and M. Sarikaya, "Electrical Detection of Biomolecular Adsorption on Sprayed Graphene Sheets,” Biosens. Bioelectron., 33 (1) 304-308 (2012). (PDF)
64. J. Feng, J. M. Slocik, M. Sarikaya, R. R. Naik, B. L. Farmer, and H. Heinz, "Influence of the Shape of Nanostructured Metal Surfaces on Adsorption of Single Peptide Molecules in Aqueous Solution," DOI: 10.1002/smll.201102066, Small, (2012). (PDF)
63. J. S. Lee, T. Kuroha, M. Hnilova, D. Khatayevich, M. M. Kanaoka, J. M. McAbee, M. Sarikaya, C. Tamerler, and K. U. Torii, "Direct Interaction of Ligand-Receptor Pairs Specifying Stomatal Patterning," Gene Dev. 26 126-136 (2012). (PDF)
62. M. Hnilova, D. Khatayevich, A. Carlson, E. E. Oren, C. Gresswell, S. Zheng, F. Ohuchi, M. Sarikaya, and C. Tamerler, "Single-Step Fabrication of Patterned Gold Film Array by an Engineered Multi-Functional Peptide," J. Colloid Interface Sci.365 (1) 97-102 (2012). (PDF)
   
  2011
61. M. Hnilova, B. Taktak-Karaca, J. Park, C. Jia, B.R. Wilson, M. Sarikaya, and C. Tamerler, "Fabrication of Hierarchical Hybrid Structures using Bio-enabled Layer-by-Layer Self-Assembly", Biotechnol. & Bioeng., (In Print 2011)
60. Mater. Sci. & Eng.-C: Materials for Biological Appls.,  Special Issue, 31 (4) 713-820 (May 2011); J. A. Nychka, J. J. Kruzic, A. Bandyopadhyay, and M. Sarikaya (eds.) (Content)
59. J. A. Nychka, J. J. Kruzik, A. Bandyopadhyay, and M. Sarikaya, "Biological Materials Science: an emerging Art," Mater. Sci. & Eng. - Materials for Biol. Appl., 32 (4), 713-715 (2011). (PDF)
58. U. O. S. Seker, G. Zengin, C. Tamerler, M. Sarikaya, and H. V. Demir, "Assembly Kinetics of Nanocrystals via Peptide Hybridization" Langmuir, 27 (8), 4867-4872 (2011). (PDF)
57. H. V. Demir, U. O. S. Seker, G. Zengin, E. Mutlugun, E. Sari, C. Tamerler, and M. Sarikaya, "Spatially Selective Assembly of Quantum Dot Light Emitters in an LED Using Engineered Peptides," ACS Nano, 5 (4), 2735-2741 (2011). (PDF)
56. E. Yuca, A. Y. Karatas, U. O. S. Seker, M. Gungormus, G. Dinler-Doganay, M. Sarikaya and C. Tamerler “In vitro labeling of hydroxyapatite minerals by an engineered protein”, Biotechnol. Bioeng., 108 (5), 1021-1030 (2011). (PDF)
   
  2010
55. K. Leong, M. T. Zin, H. Ma, M. Sarikaya, F. Huang, and A. K.-Y. Jen, "Surface Plasmon enhanced fluorescence of cationic conjugated polymer on periodic nanoarrays", ACS Appl. Mater and Interfaces, 2(11) 3153-3159 (2010). (PDF)
54. Q. Li, C. R. So, A. Fegan, V. Cody, M. Sarikaya, D. A. Vallera, and C. R. Wagner, "Chemically Self-assembled Antibody Nanorings (CSANs): Design and Characterization of an Anti-CD3 IgM Biomimetic", J. Amer. Chem. Soc., 132, (48), 17247–17257 (2010). (PDF)
53. R. Notman, E. E. Oren, C. Tamerler, M. Sarikaya, R. Samudrala, and T. R. Walsh, "Solution Study of Engineered Quartz Binding Peptides using Replica Exchange Molecular Dynamics", Biomacromolecules, 11 (12), 3266-3274 (2010). (PDF)
52. R. Hall Sedlak, M. Hnilova, E. Gachelet, L. Przybyla, D. Dranow, T. Gonen, M. Sarikaya, C. Tamerler, and B.Traxler, "An Engineered DNA-Binding Protein Self-assembles Metallic Nanostructures", Chem. BioChem., 11 (15) (2010). (PDF)
51. A. Dezieck, O. Acton, K. Leong, E. E. Oren, H. Ma, C. Tamerler, M. Sarikaya, and A. K.-Y. Jen, "Threshold voltage control in organic thin film transistors with dielectric layer modified by a genetically engineered polypeptide", Appl. Phys. Lett. 97, 013307-013310 (2010) (PDF)
50. K. Leong, Y. Chen, D. J. Masiello, M. T. Zin, M. Hnilova, H. Ma, C. Tamerler, M. Sarikaya, D. S. Ginger, and A. K.-Y. Jen, "Cooperative Near-field Surface Plasmon Enhanced Quantum Dot Nanoarrays", Adv. Funct. Mater. 20 (16), 2675-2682 (2010) (PDF)
49. D. Khatayevich, M. Gungormus, C. So, S. Getinel, H. Ma, A. K.-Y. Jen, C. Tamerler, and M. Sarikaya, "Biofunctionalization of Materials for Implants Using Engineered Peptides", Acta Biomaterelia. 6 (12), 4634-4641 (2010) (PDF)
48. M. Gungormus,, M. Branco, H. Fong, J. P. Schneider, C. Tamerler, and M. Sarikaya, "Self Assembled Bi-functional Peptide Hydrogels with Biomineralization-Directing Peptides," Biomaterials, 31 (28), 7266-7274(2010). (PDF)
47. E. E. Oren, R. Notman, I. W. Kim, J. S. Evans, T. R. Walsh, R. Samudrala, C. Tamerler and M. Sarikaya, "Probing the molecular mechanisms of quartz-binding peptides," Langmuir, 26 (13), 11003–11009 (2010). (PDF)
46. C. Tamerler, D. Khatayevich, M. Gungormus, T. Kacar, E. E. Oren, M. Hnilova, and M. Sarikaya "Molecular biomimetics: GEPI-based biological routes to technology", Biopolymers Peptide Science, 94, 78-94 (2010). (PDF)
   
  2009
45. G. Zengin, U.O.S. Seker, M. Sarikaya, C. Tamerler, H. V. Demir, “Quantum dot emitters integrated with smart peptides,” LEOS Annual Meeting Conference Proceedings, 2009. IEEE, 88-89 (2009). (PDF)
44. C. Tamerler and M. Sarikaya, "Genetically Designed Peptide-Based Molecular Materials", ACS Nano, 3 1606-1615 (2009). (PDF)
43. P. Cakar, C. Alkim, B. Turanli, N. Tokman, S. Akman, M. Sarikaya, C. Tamerler, L. Benbadis and J. M. Francois, "Isolation of cobalt hyper-resistant mutants of Saccharomyces cerevisiae by in vivo, evolutionary engineering approach", J. Biotechnology, 143 130-138 (2009). (PDF)
42. C. R. So, J. L. Kulp, E. E. Oren, H. Zareie, C. Tamerler, J. S. Evans and M. Sarikaya, "Molecular Recognition and Supramolecular Self-Assembly of a Genetically Engineered Gold Binding Peptide on Au{111}", ACS Nano, 3 1525-1531 (2009). (PDF)
41. H. Fong, B.L. Foster, M. Sarikaya and M.J. Somerman, "Structure and Mechanical Properties of Ank/Ank Mutant Mouse Dental Tissues"An Animal Model for Studying Periodontal Regeneration ", Archives of Oral Biology, 54 570-576 (2009). (PDF)
40. T. Kacar, M. T. Zin, C. So, B. Wilson, H. Ma, N. Gul-Karaguler, A. K-Y. Jen, M. Sarikaya and Candan Tamerler, "Directed Self-Immobilization of Alkaline Phosphatase on Micro-patterned Substrates via Genetically-Fused Metal-Binding Peptide", Biotechnology and Bioengineering, 103 696-705 (2009). (PDF)
39. J. H. Wei, T. Kacar, C. Tamerler, M. Sarikaya, and D. S. Ginger, "Nanopatterning peptides as Bi-functional Inks for Templated assembly", Small, 5 689-693 (2009). (PDF)
38. C. R. So., C. Tamerler, and M. Sarikaya, "Adsorption, Diffusion, and Self-Assembly of an Engineered Gold Binding peptide on Au(111) by atomic Force Microscopy", Angew Chem. Intl. Ed., 48 5174-5177 (2009). (PDF)
37. C. Tamerler and M. Sarikaya, "Molecular Biomimetics: Nanotechnology and Molecular Medicine Utilizing Genetically Engineered Peptides", Philosphical Transactions-A, 367 1705-1726 (2009). (PDF)
36. U. O. S. Seker, B. Wilson, D. Sahin, C. Tamerler and M. Sarikaya, "Quantitative Affinity of Genetically Engineered Repeating Polypeptides to Inorganic Surfaces", Biomacromolecules, 10 250-257 (2009). (PDF)
35. T. Kacar, J. Ray, M. Gungormus, E. E. Oren, C. Tamerler and M. Sarikaya, "Quartz Binding Peptides as Molecular Linkers towards Fabricating Multifunctional Micropetterned Substrates", Advanced Materials, 21 295-299 (2009). (PDF)
34. S. Donatan, H. Yazici, H. Bermek, M. Sarikaya, C. Tamerler and M. Urgen, "Physical elution in phage display selection of inorganic-binding peptides", Materials Science and Engineering C, 29 14-19 (2009). (PDF)
33. M. T. Zin, K. Leong, N-Y. Wong, H. Ma, M. Sarikaya and A. K-Y. Jen, "Surface-plasmon-enhanced fluorescence from periodic quantum dot arrays through distance control using biomolecular linkers", Nanotechnology, 20 015305 (2009). (PDF)
   
  2008
32. G. Zengin, U. O. S. Seker, A. Koc, E. Mutlugun, O. Akyuz, E. Sari, M. Sarikaya, C. Tamerler, and H. Volkan Demir, “Multi-material specific, targeted self-assembly of nanocrystal emitters using genetically engineered peptides on optoelectronic microchips,” IEEE Lasers and Electro-Optics Society (21st Ann Mtg), 242-243 (2008). (PDF)
31. B. Fischer, L. Man, M. Gungormus, C. Tamerler, M. Sarikaya, and H. Koser, "Ferro-microfluidic device for pathogen detection", 3rd IEEE Intl. Conf. on Nano/Micro Engineered and Molecular Systems, NEMS, 907-910 (2008). (PDF)
30. K. Leong, M. T. Zin, H. Ma, F. Huang, M. Sarikaya, A. K.-Y. Jen, "Bioengineered-inorganic nanosystems for nanophotonics and bio-nanotechnology", Proc. SPIE – Intl. Soc. Optical Eng., 7040, 1-12 (2008). (PDF)
29. T. F. Chou, C. So, B. R. White, J. C. T. Carlson, M. Sarikaya and C. R. Wagner, "Enzyme Nanorings", ACS Nano, 2 2519-2525(2008). (PDF)
28. M. J. Honda, H. Fong, S. Iwatsuki, Y. Sumita andM. Sarikaya, "Tooth-forming potential in embryonic and postnatal tooth bud cells", Medical Molecular Morphology, 41 183-192 (2008)(PDF)
27. M. Hnilova, E. E. Oren, U. O. S. Seker, B. R. Wilson, S. Collino, J. S. Evans, C. Tamerler and M. Sarikaya, "Effect of Molecular Conformations on the Adsorption Behavior of Gold-Binding Peptides", Langmuir, 24 12440-12445 (2008). (PDF)
26. S. Dincer, C. Tamerler, M. Sarikaya, and E. Piskin, "Photoresponsive Peptide-Azobenzene Conjugates that Specifically Interact with Platinum Surfaces", Surface Science, 602 1757-1762 (2008). (PDF)
25. C. Tamerler, and M. Sarikaya, "Molecular Biomimetics: Genetic Synthesis, Assembly, and Formation of Materials Using Peptides", MRS Bulletin, 33 504-510 (2008). (PDF)
24. D. B. Allred, A. Cheng, M. Sarikaya, F. Baneyx and D. T. Schwartz, "Three-Dimensional Architecture of Inorganic Nanoarrays Electrodeposited through a Surface-Layer Protein Mask", Nano Letters, 8 1434-1438 (2008). (PDF)
23. M. Gungormus, H. Fong, I. W. Kim, J. S. Evans, C. Tamerler, and M. Sarikaya, "Regulation of in vitro Calcium Phosphate Mineralization by Combinatorially Selected Hydroxyapatite-Binding Peptides", Biomacromolecules, 9 966-973 (2008). (PDF)
22. M. A. Bratescu, D. B. Allred, N. Saito, M. Sarikaya, and O. Takai, "Attenuated Total Reflectance Spectroscopy of Simultaneous Processes: Corrosion Inhibition of Cuprous Oxide by Nenzotriazole", Applied Surface Science, 254 (10) 2960-2966 (2008). (PDF)
   
  2007
21. E. E. Oren, C. Tamerler, D. Sahin, M. Hnilova, U. O. S. Seker, M. Sarikaya, and R. Samudrala, "A Novel Knowledge-Based Approach to Design Inorganic Binding Peptides", Bioinformatics, 23 2816-2822 (2007). (PDF)
20. U. O. S. Seker, B. Wilson, S.l Dincer, I. W. Kim, E. E. Oren, J. S. Evans, C. Tamerler, and M. Sarikaya, "Adsorption Behavior of Genetically Engineered Linear and Cyclic Pt-Binding Peptides", Langmuir, 23 7895-7900 (2007). (PDF)
19. D. B. Allred, M. Sarikaya, F. Baneyx, and D. T. Schwartz, "Bacterial Surface Layer Proteins for Electrochemical Nanofabrication", Electrochimica Acta, 53 (1) 193-199 (2007). (PDF)
18. H. Ma, M. T. Zin, M. H. Zareie, M.-S. Kang, S. H. Kang, K. S. Kim, B. W. Reed, C. Tamerler, M. Sarikaya, and A. K.-Y. Jen, "Assembly of Nanomaterials through Highly Ordered Self-Assembled Monolayers and Peptide-Organic Hybrid Conjugates as Templates", J. Nanosci. & Nanotech., 7(8) 2549-2566 (2007).
17. D. B. Allred, M. T. Zin, H. Ma, M. Sarikaya, F. Baneyx, A. K.-Y. Jen and D. T. Schwartz, "Direct Nanofabrication and Transmission Electron Microscopy on a Suite of Easy-to-Prepare Ultrathin Ffilm Substrates", Thin Solid Films, 515 5341-5347, (2007). (PDF)
16. A. Presenda, D. B. Allred, F. Baneyx, D. T. Schwartz, and M. Sarikaya, "Stability of S-Layer Proteins for Electrochemical Nanofabrication", Colloids & Surfaces B: Biointerfaces, 57 256-261 (2007). (PDF)
15. N. Suzuki, L. Gamble, C. Tamerler, M. Sarikaya, D. G. Castner and F. S. Ohuchi, "Adsorption of Genetically Engineered Proteins Studied by Time-of-Flight Secondary Ion Mass Spectrometry (TOF-SIMS). Part A: Data Acquisition and Principal Component Analysis (PCA) ", Surface and Interface Analysis, 39 419-426 (2007). (PDF)
14. N. Suzuki, M. Sarikaya and F. S. Ohuchi, "Adsorption of Genetically Engineered Proteins Studied by Time-of-Flight Secondary Ion Mass Spectrometry (TOF-SIMS). Part B: Hierarchical Cluster Analysis (HCA)", Surface and Interface Analysis, 39 427-433 (2007). (PDF)
13. C. Tamerler, T. Kacar, D. Sahin, H. Fong and M. Sarikaya, "Genetically Engineered Polypeptides for Inorganics: A Utility in Biological Materials Science and Engineering", Materials Science and Engineering C, 27 558-564 (2007). (PDF)
12. M. T. Zin, A. M. Munro, M. Gungormus, N. Y. Wong, H. Ma, C. Tamerler, D. S. Ginger, M. Sarikaya and A. K.-Y., Jen, "Peptide-Mediated Surface-Immobilized Quantum Dot Hybrid Nanoassemblies with Controlled Photoluminescence", Journal of Materials Chemistry, 17 866-872 (2006). (PDF)
11. C. Tamerler and M. Sarikaya, "Molecular Biomimetics: Utilizing Nature's Molecular Ways in Practical Engineering", Acta Biomaterialia, 3 289-299 (2007). (PDF)
   
  2006
10. H. Zareie, M. Sarikaya, A. M. McDonagh, J. Barber, M. Cortie, M. Phillips, "Self-Organized Materials: From Organic molecules to Genetically Engineered Gold-Binding Proteins" IEEE, ICONN '06. Intl. Conf. on Nanoscience and Nanotechnology, 517-519 (2006). (PDF)
9. M. T. Zin, H. Ma, A. M. Munro, D. S. Ginger, M. Gungormus, K. Leong, C. Tamerler, M. Sarikaya and A. K.-Y. Jen, "Well-Controlled Arrays of Core-Shell Quantum Dots with Tunable Photoluminescence Properties", Poly. Mater. Sci. Eng., 95 1002-1003 (2006). (PDF)
8. M. T. Zin, H. Ma, M. S. Kang, S. H. Kang, K. S. Kim, M. H. Zareie, K. Leong, M. Sarikaya, and A. K.-Y. Jen, “Controlled Self-Assembly of Nanomaterials through Highly Ordered Self-Assembled Monolayers and Genetically Engineered Polypeptides”, Poly. Mater. Sci. Eng. 95 1071-1077 (2006).
7. C. Tamerler, M. Duman, E. E. Oren, M. Gungormus, X, Xiong, T. Kacar, B. A. Parviz and M. Sarikaya, "Materials Specificity and Directed Assembly of a Gold-Binding Peptide", Small, 2 1372-1378 (2006). (PDF)
6. C. Tamerler, E. E. Oren, M. Duman, E. Venkatasubramanian and M. Sarikaya, "Adsorption Kinetics of an Engineered Gold Binding Peptide by Surface Plasmon Resonance Spectroscopy and a Quartz Crystal Microbalance", Langmuir, 22 7712-7718 (2006). (PDF)
5. C. Tamerler and M. Sarikaya, "Molecular Biomimetics: Linking Peptides with Inorganic Structures" in Microbial Bionanotechnology: Biological Self-assembly Systems and Biopolymer-based Nanostructures, (Bernd Rehm eds.), Chapter 8, pp: 191-221 (Horizon, London, 2006).
   
  2005
4. X. Xiong, M. Gungormus, C. Tamerler, M. Sarikaya, B. A. Parviz, “Nanoscale self-assembly mediated by genetically engineered gold binding polypeptide,” 5th IEEE Conf. on Nanotechnology, 1, 340-343 (2005). (PDF)
3. M. Gungormus, X. Xiong, C. Tamerler, B. A. Parviz, and M. Sarikaya, M., "Genetically engineered polypeptide for differential recognition of platinum on microfabricated structures," Intl. Conf. on MEMS, NANO and Smart Systems, Proc. IEEE 167-171 (2005). (PDF)
2.  H. Dai, W. S. Choe, C. K. Thai, M. Sarikaya, B. A. Traxler, F. Baneyx, and D. T. Schwartz, "Nonequilibrium Synthesis and Assembly of Hybrid Inorganic-Protein Nanostructures using an Engineered DNA Binding Protein", J. Am Chem Soc, 127(44) 15637-15643 (2005). (PDF)
1. M. T. Zin, H. Ma, M. Sarikaya, and A. K.-Y. Jen, "Assembly of Gold Nanoparticles using Genetically Engineered Poypeptides", Small, 1(7) 698-702 (2005). (PDF)