Department of Biochemistry Box 357350 University of Washington Seattle, WA 98195
 



 
 
 
       
David Eyre


Adjunct Professor of Biochemistry

Professor of Orthopedics

206.543.4700 V
206.685.4700 F
deyre@u.washington.edu


 

Research

We are interested in the molecular structure and function of the extracellular matrix of bone, cartilage and other tissues that form the mammalian skeleton. Our focus is on protein assembly. We are studying mechanisms of collagen polymerization, covalent cross-linking through the lysyl oxidase mechanism, interactions between different types of collagens to form hybrid fibrils and proteolytic pathways of matrix turnover and degradation. One broad aim is to understand how articular cartilage is destroyed in osteoarthritis, a common debilitating disease.

The consequences of mutations that cause rare heritable disorders of the skeleton are also being examined at the protein level to understand the link from gene defect to tissue and clinical phenotype. A range of methods in protein analysis is being applied, including ion-trap mass spectrometry, to determine unique post-translational features and other properties of functional domains. Chondrocyte cell lines provide an experimental system for examining the assembly of macromolecules into extracellular matrix.

Selected Publications

Eyre DR, Wu J-J, Fernandes RJ, Pietka TA, Weis MA. (2002) Recent developments in cartilage research: Matrix biology of the collagen II/IX/XI heterofibril network. Biochem. Soc. Trans. 30(6), 894-899

Matsui Y, Chansky HA, Barahmand-Pour F, Zielinska-Kwiatkowska A, Tsumaki N, Myoui A, Yoshikawa H, Yang L, Eyre DR. (2003) COL11A2 collagen gene transcription is differentially regulated by EWS / ERG sarcoma fusion protein and wild-type ERG. J. Biol. Chem. 278(13), 11369-11375

Matsui Y, Wu J, Weis MA, Pietka T, Eyre D. (2003) Matrix deposition of tryptophan-containing allelic variants of type IX collagen in developing human cartilage. Matrix Biol. 22(2), 122-128

Wu JJ, Eyre DR. (2003) Intervertebral disc collagen: Usage of the short form of ?1(IX) in bovine nucleus pulposus. J. Biol. Chem. 278(27), 24521-24525

Fernandes RJ, Schmid TM, Eyre DR. (2003) Assembly of collagen types II, IX and XI into nascent heterofibrils by a rat chondrocyte cell line. Eur. J. Biochem. 270(15), 3243-3250

Matsui Y, Mirza SK, Wu J-J, Carter B, Belgrouparba C, Shaffrey CI, Chapman JR, Eyre DR. (2004) The Association of lumbar spondylolisthesis with collagen IX tryptophan alleles. J. Bone Joint Surg.