Electronic Resources
Scripting
  • Linux in a Nutshell: Great resource for learning how to master the command line
  • Sed: Very simple command line text manipulation; best for quick substitutions
  • Awk: Simple, column-oriented text processing; best for use on one file
  • Perl: Extremely powerful text file manipulation; arguably the best in its class
  • Python: User-friendly, object oriented data manipulation
Protocols & General Info
Primer Design
  • PrimerX: Automated design of mutagenic primers for site-directed mutagenesis
  • Stratagene: QuikChange® Primer Design Program
Gene Synthesis
  • DNA Works 2.4: Automatic oligonucleotide design for PCR-based gene synthesis
Downloadable Programs
Molecular Visualization Software
Online Servers
  • Robetta: Full-chain protein structure prediction server
  • BioInfoBank: Gateway to well-benchmarked protein structure and function prediction methods
  • SMILES: Translator and structure file generator
  • molmovdb.org: Database of Macromolecular Movements
  • Zbio.net: PCR Optimization
Databases
More Lists of Links
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