Services and facilities for researchers

Facility Core 1
Functional Genomics Laboratory

Facility Core 2
Functional Proteomics Laboratory

Facility Core 3
Analytical Cytology

Facility Core 4
Transgenic Animal Services

Facility Core 5
Bioinformatics & Biostatistics

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Analytical Cytology
Facility Core 3

Terry Kavanagh, PhD, Director
Peter Rabinovitch, MD, PhD, Co-Director

Overview
Facilities
Costs
Contact

Overview
Fundamental research into the causes of environmentally related diseases often benefits from state-of-the-art laboratory techniques, especially those that use human cells and tissues grown in a biological culture medium.

Hepa 1 Microtubules

Analysis and measurement of the structural components of tissues, as well as direct biochemical analysis of many specific functions in living cells and tissues in culture, can be performed with remarkable sensitivity and specificity using techniques such as flow cytometry, laser-cytometry–confocal microscopy, and digital image analysis. Collectively, these experimental approaches form the basis of analytical cytology. These tools have become indispensable for assessing the effects of toxic chemicals on cell physiology, structure, and function and new and exciting approaches continue to be developed in this field. The expense and technical expertise required to master these tools, however, often present barriers to wide use of cytometry equipment.

Topo plot of glutathione
content in cells

The goal of the Analytical Cytology Facility Core is to make analytical cytology services more accessible by reducing costs and providing technical assistance and consultation for CEEH investigators, thereby providing significant incentives to use this advanced instrumentation. By providing access to and training in the use of advanced cytological tools, the Core supports CEEH research into the mechanisms of action of environmental agents affecting human health.

Facilities

The Analytical Cytology Facility Core maintains a confocal laser microscope, has upgraded the Core digital imaging system, and now provides access to a two flow cytometers.

Confocal Laser Microscope
The Core maintains an Adherent Cell Analysis and Sorting (ACAS) Ultima Laser Cytometer, a confocal laser microscope/image analysis system specifically designed for fluorescence analysis and sorting of cells that are attached to solid surfaces, such as tissue culture plates or glass slides (adherent cells).

Mouse Fetus stain with
Mercury Orange

UV and visible light excitation); in situ hybridizations, DNA content/analysis; in situ PCR quantitation and localization; high resolution confocal microscopy with 3-D reconstructions/rotations of optical slices in 1 or 2 colors; reflectance confocal images for quantitative imaging of silver grains (autoradiography), The instrument also has the ability to microscopically focus at different depths of the tissue (confocal). The types of measurements and interactive studies that can be performed with the instrument on cells/tissues/structures include bio-imaging applications such as quantitative fluorescence microscopy in one or two colors (with simultaneous UV and visible light excitation); in situ hybridizations, and DNA content/analysis; in situ PCR quantitation and localization; high-resolution confocal microscopy with 3-D reconstructions/rotations of optical slices in one or two colors; reflectance confocal images for quantitative imaging of silver grains (autoradiography), colloidal gold, peroxidase-diaminobenzidine, geimsa, etc.; and cell physiology/pathology studies including dye exclusion (viability), kinetic measurements of calcium and other ions, pH, mitochondrial membrane potential, glutathione and glutathione transferase, NAD(P)H, gap junctional intercellular communication, membrane fluidity, endoplasmic reticulum, membrane pumps (MDR, organic ion transport), antigen tracking/capping, cytochrome P450 activity, beta-galactosidase activity, bioluminescence, reactive oxygen species, respiratory burst, lipid peroxidation, and apoptosis.

Liver stain for
cytochrome
P450 1A1 activity

The instrument can also be used for interactive studies such as cell sorting/enrichment (while cells are attached to dishes); FRAP (fluorescence recovery after photobleaching); FRET (fluorescence resonance energy transfer); laser surgery on cells and organelles; photo-activation of "caged" compounds (calcium, IP3, fluorescent dextrans); quantitative irradiation of cells/organelles with UV or visible light; laser poration of macromolecules into cells; and laser-induced cell membrane fusion.

Digital Imaging
The Core also houses a digital image analysis system full color and densitometric analysis of samples (both macroscopic and microscopic). The system consists of of a cooled CCD camera (Spot R/T Slider) attached to a Nikon Optiphot microscope with fluorescence, DIC and dark field illumination, and associated image analysis software (Metamorph V4.6, Universal Imaging).

Flow Cytometer
Recently, Kavanagh and Rabinovitch were successful in obtaining a DRR Shared instrumentation Grant to purchase a high-speed cell sorter (MoFlo, DakoCytomation) that is capable of sorting up to 70,000 cells per second and is available to CEEH investigators for their studies. This instrument replaced a fully functional Coulter Elite Flow Cytometer/Cell Sorter, which was moved to the laboratory of the Analytical Cytology Facility Core. The Core upgraded the system's laser, the operating software, and the computer system (Pentium 3 Flowcenter Work Station with Expo32 Multicomp Software, Beckman/Coulter). Thus, both instruments are available to fully serve CEEH investigator needs in the area of flow cytometry and fluorescence-activated cell sorting.

Cost per Hour of Use

CEEH Members  

ACAS Confocal Imaging

$39

Flow Cytometry $39
Digial Imaging $10

Non-CEEH Members
 
ACAS Confocal Imaging $86
Flow Cytometry $86

Digial Imaging

$10

Prices updated 5/3/04

Contact
Collin White
(206) 543-8458, UW Box 354695

 
 
Center for Ecogenetics and Environmental Health
Environmental and Occupational Health Sciences
University of Washington
4225 Roosevelt Way NE, Suite 100
Seattle, WA 98105-6099
(206) 543-4383