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<big>'''CHARGE Consortium Wiki''' ('''C'''ohorts for '''H'''eart and '''A'''ging '''R'''esearch in '''G'''enomic '''E'''pidemiology)</big> | <big>'''CHARGE Consortium Wiki''' ('''C'''ohorts for '''H'''eart and '''A'''ging '''R'''esearch in '''G'''enomic '''E'''pidemiology)</big> | ||
== Getting started | == Getting started == | ||
Unlike the [http://www.chargeconsortium.com CHARGE Consortium Public Website], this wiki requires a username and password to view most pages. To gain access, please fill-out the [[Special:RequestAccount|Request Account]] form; new user requests are reviewed by the [[RSC|Research Steering Committee]] approximately twice per month. | Unlike the [http://www.chargeconsortium.com CHARGE Consortium Public Website], this wiki requires a username and password to view most pages. To gain access, please fill-out the [[Special:RequestAccount|Request Account]] form; new user requests are reviewed by the [[RSC|Research Steering Committee]] approximately twice per month. | ||
Once logged in, you can edit existing pages or [[ | Once logged in, you can edit existing pages or [[New_Page|Create a new page]]. Wikipedia has a nice [http://en.wikipedia.org/wiki/Wikipedia:Tutorial tutorial] on how to edit pages. | ||
== Consortium Documents (public, no login required) | == Consortium Documents (public, no login required) == | ||
*[[ChargePrinciples|CHARGE Principles]] ([http://depts.washington.edu/chargeco/docs/CHARGE_Consortium-02-01-2008.pdf pdf]) : Principles for collaboration in the consortium, approved Jan 2008 by founding cohorts. | *[[Charge:About|CHARGE Overview]]: Overview of the Consortium and the role of the Research Steering Committee | ||
*[[ChargeWorkingGroupPrinciples|CHARGE Working Group Principles]] ([http://depts.washington.edu/chargeco/docs/CHARGE_WGConsortium-02-01-2008.pdf pdf]) : Principles for collaboration in CHARGE working groups, new participants in working groups or CHARGE projects are asked to review and agree to these principles before joining. | *[[ChargePrinciples|CHARGE Principles]] ([http://depts.washington.edu/chargeco/docs/CHARGE_Consortium-02-01-2008.pdf pdf]) : Principles for collaboration in the consortium, approved Jan 2008 by founding cohorts. | ||
*[[DataSharingPrinciples|Aggregate Results-Sharing Principles]] : Guidelines for sharing results of GWAS, for participation in working groups and collaborative meta-analyses. | *[[ChargeWorkingGroupPrinciples|CHARGE Working Group Principles]] ([http://depts.washington.edu/chargeco/docs/CHARGE_WGConsortium-02-01-2008.pdf pdf]) : Principles for collaboration in CHARGE working groups, new participants in working groups or CHARGE projects are asked to review and agree to these principles before joining. | ||
*[[DataSharingPrinciples|Aggregate Results-Sharing Principles]] : Guidelines for sharing results of GWAS, for participation in working groups and collaborative meta-analyses. | |||
*[[ResultsSharingFormat|Results Sharing Format]] : file format guidelines for sharing of aggregate results for meta-analysis. | *[[ResultsSharingFormat|Results Sharing Format]] : file format guidelines for sharing of aggregate results for meta-analysis. | ||
== Committees & | == Committees & Working Groups == | ||
*[[RSC|Research Steering Committee]]: Membership and minutes | *[[RSC|Research Steering Committee]]: Membership and minutes | ||
*[[ | *[[Analysis_subcomittee|Analysis Subcommittee]]: Resources and references for doing analyses, and minutes of analysis calls | ||
*[http://depts.washington.edu/chargeco/wiki/CHARGE-S CHARGE-S PAGE] : The CHARGE Sequencing GWAS follow-up project | *[http://depts.washington.edu/chargeco/wiki/CHARGE-S CHARGE-S PAGE] : The CHARGE Sequencing GWAS follow-up project | ||
*[[ExomeChip|Exome Chip]]: Coordinated consortium-wide genotyping & | *[[ExomeChip|Exome Chip]]: Coordinated consortium-wide genotyping & analyses of Exome Chip data | ||
*[[WorkingGroups|Working Groups]]: Directory of phenotype working groups | *[[WorkingGroups|Working Groups]]: Directory of phenotype working groups | ||
*[http://depts.washington.edu/chargeco/wiki/img_auth.php/a/aa/2018_April_WG_updates_%28Rotterdam%29_aw.pdf CHARGE Working Group Reports (April 2018)] | |||
*[[ResultsSharing|Results Sharing]]: Listing of file-sharing sites for each Working Group and contributing study, and details about CHARGE results sharing protocols | *[[ResultsSharing|Results Sharing]]: Listing of file-sharing sites for each Working Group and contributing study, and details about CHARGE results sharing protocols | ||
| Line 30: | Line 32: | ||
*[[Acknowledgements]]: Funding acknowledgements. | *[[Acknowledgements]]: Funding acknowledgements. | ||
*[[Logos]] : versions of the CHARGE Tiger, with some explanations of its origins. | *[[Logos]] : versions of the CHARGE Tiger, with some explanations of its origins. | ||
*[http://depts.washington.edu/chargeco/wiki/img_auth.php/ | *<span style="color: rgb(0, 0, 255);">[http://depts.washington.edu/chargeco/wiki/img_auth.php/2/2f/CHARGE_Bibliography_11.27.17.pdf CHARGE''' ''' Bibliography]</span><span style="color: rgb(0, 0, 255);"></span> [http://depts.washington.edu/chargeco/wiki/img_auth.php/2/2f/CHARGE_Bibliography_11.27.17.pdf November 2017] | ||
'''Methods paper:''' Psaty BM, O'Donnell CJ, Gudnason V, Lunetta KL, Folsom AR, Rotter J.L., Uitterlinden AG, Harris TB, Witteman JCM, Boerwinkle E, on behalf of the CHARGE Consortium. Cohorts for Heart and Aging Research in Genomic Epidemiology (CHARGE) Consortium: Design of prospective meta-analyses of genome-wide association studies from five cohorts. Circ Cardiovasc Genet. 2009;2:73-80. | '''Methods paper:''' Psaty BM, O'Donnell CJ, Gudnason V, Lunetta KL, Folsom AR, Rotter J.L., Uitterlinden AG, Harris TB, Witteman JCM, Boerwinkle E, on behalf of the CHARGE Consortium. Cohorts for Heart and Aging Research in Genomic Epidemiology (CHARGE) Consortium: Design of prospective meta-analyses of genome-wide association studies from five cohorts. Circ Cardiovasc Genet. 2009;2:73-80. | ||
== Investigator Meetings == | == Investigator Meetings == | ||
=== Upcoming Meeting === | === Upcoming Meeting === | ||
* [[Baltimore Meeting|Baltimore, Maryland]]: October 11-12 | |||
=== Past Meetings === | |||
*[[Rotterdam_Meeting_2018|Rotterdam, the Netherlands]]: April 18-19 | |||
*[[Boston_Meeting_2017]]: September 27 & 28, 2017 . | |||
*[http://depts.washington.edu/chargeco/wiki/NewYork_Meeting_2016 New York, New York] : March 23 & 24, 2017 | |||
*[https://sites.google.com/chargeconsortium.com/workshop/home Commons Analysis Workshop] - Houston, TX - January 24-25 2017 | |||
*[[Charlottesville_Meeting_2016|Charlottesville, Virginia]]: Fall 2016 September 28 & 29 | *[[Charlottesville_Meeting_2016|Charlottesville, Virginia]]: Fall 2016 September 28 & 29 | ||
*[[Houston_Meeting_2016|Houston, Texas]]:January 26-27, 2016 | *[[Houston_Meeting_2016|Houston, Texas]]:January 26-27, 2016 | ||
*[[Jackson_Meeting_2015|Jackson, Mississippi]]: July 1-2, 2015 | *[[Jackson_Meeting_2015|Jackson, Mississippi]]: July 1-2, 2015 | ||
| Line 56: | Line 62: | ||
*[[FraminghamMeeting|Framingham Meeting]]: held 22-24 January 2008 | *[[FraminghamMeeting|Framingham Meeting]]: held 22-24 January 2008 | ||
== Founding Cohorts | == Founding Cohorts == | ||
*Age, Gene, Environment Susceptibility ([http://www.hjarta.is/english/ages AGES]) | *Age, Gene, Environment Susceptibility ([http://www.hjarta.is/english/ages AGES]) | ||
*Atherosclerosis Risk in Communities Study ([http://www.cscc.unc.edu/aric/ ARIC]) | *Atherosclerosis Risk in Communities Study ([http://www.cscc.unc.edu/aric/ ARIC]) | ||
*Cardiovascular Health Study ([http://www.chs-nhlbi.org/default.htm CHS]) | *Cardiovascular Health Study ([http://www.chs-nhlbi.org/default.htm CHS]) | ||
*Framingham Heart Study ([http://www.framinghamheartstudy.org/ FHS]) | *Framingham Heart Study ([http://www.framinghamheartstudy.org/ FHS]) | ||
*Rotterdam Study (ERGO or [http://www.erasmus-epidemiology.nl/research/ergo.htm RS]) | *Rotterdam Study (ERGO or [http://www.erasmus-epidemiology.nl/research/ergo.htm RS]) | ||
== Other Resources | == Other Resources == | ||
*Please try to use text or online-viewable formats such as plain text or PDF whenever feasible. Microsoft has a [http://www.microsoft.com/download/en/details.aspx?id=12298 plug-in for Word 2007/2010] that allows you to save documents directly to MediaWiki Format. Similar functionality is also available in [http://www.openoffice.org/ OpenOffice]. | *Please try to use text or online-viewable formats such as plain text or PDF whenever feasible. Microsoft has a [http://www.microsoft.com/download/en/details.aspx?id=12298 plug-in for Word 2007/2010] that allows you to save documents directly to MediaWiki Format. Similar functionality is also available in [http://www.openoffice.org/ OpenOffice]. | ||
*[[TimeZones|Time Zones]]: Useful information for setting up conference calls | *[[TimeZones|Time Zones]]: Useful information for setting up conference calls | ||
*Consult the [http://meta.wikimedia.org/wiki/Help:Contents User's Guide] or [http://www.mediawiki.org/wiki/Manual:FAQ MediaWiki FAQ] for information on using the wiki software. | *Consult the [http://meta.wikimedia.org/wiki/Help:Contents User's Guide] or [http://www.mediawiki.org/wiki/Manual:FAQ MediaWiki FAQ] for information on using the wiki software. | ||
Revision as of 16:58, 12 July 2018
CHARGE Consortium Wiki (Cohorts for Heart and Aging Research in Genomic Epidemiology)
Getting started
Unlike the CHARGE Consortium Public Website, this wiki requires a username and password to view most pages. To gain access, please fill-out the Request Account form; new user requests are reviewed by the Research Steering Committee approximately twice per month.
Once logged in, you can edit existing pages or Create a new page. Wikipedia has a nice tutorial on how to edit pages.
Consortium Documents (public, no login required)
- CHARGE Overview: Overview of the Consortium and the role of the Research Steering Committee
- CHARGE Principles (pdf) : Principles for collaboration in the consortium, approved Jan 2008 by founding cohorts.
- CHARGE Working Group Principles (pdf) : Principles for collaboration in CHARGE working groups, new participants in working groups or CHARGE projects are asked to review and agree to these principles before joining.
- Aggregate Results-Sharing Principles : Guidelines for sharing results of GWAS, for participation in working groups and collaborative meta-analyses.
- Results Sharing Format : file format guidelines for sharing of aggregate results for meta-analysis.
Committees & Working Groups
- Research Steering Committee: Membership and minutes
- Analysis Subcommittee: Resources and references for doing analyses, and minutes of analysis calls
- CHARGE-S PAGE : The CHARGE Sequencing GWAS follow-up project
- Exome Chip: Coordinated consortium-wide genotyping & analyses of Exome Chip data
- Working Groups: Directory of phenotype working groups
- CHARGE Working Group Reports (April 2018)
- Results Sharing: Listing of file-sharing sites for each Working Group and contributing study, and details about CHARGE results sharing protocols
Consortium Information
Infrastructure for the CHARGE Consortium is supported in part by the National Heart, Lung, and Blood Institute grant HL105756. Additional acknowledgements are available at Acknowledgements.
- CHARGE Consortium : Public consortium website
- Acknowledgements: Funding acknowledgements.
- Logos : versions of the CHARGE Tiger, with some explanations of its origins.
- CHARGE Bibliography November 2017
Methods paper: Psaty BM, O'Donnell CJ, Gudnason V, Lunetta KL, Folsom AR, Rotter J.L., Uitterlinden AG, Harris TB, Witteman JCM, Boerwinkle E, on behalf of the CHARGE Consortium. Cohorts for Heart and Aging Research in Genomic Epidemiology (CHARGE) Consortium: Design of prospective meta-analyses of genome-wide association studies from five cohorts. Circ Cardiovasc Genet. 2009;2:73-80.
Investigator Meetings
Upcoming Meeting
- Baltimore, Maryland: October 11-12
Past Meetings
- Rotterdam, the Netherlands: April 18-19
- Boston_Meeting_2017: September 27 & 28, 2017 .
- New York, New York : March 23 & 24, 2017
- Commons Analysis Workshop - Houston, TX - January 24-25 2017
- Charlottesville, Virginia: Fall 2016 September 28 & 29
- Houston, Texas:January 26-27, 2016
- Jackson, Mississippi: July 1-2, 2015
- Washington, DC: November 12-13 2014
- Los Angeles, California : January 22-24, 2014
- Rotterdam Meeting: June 13-14, 2013
- Houston Texas Meeting December 12-14, 2012
- CHARGE Analysis Workshop September 27 & 28, 2012 Boston, MA
- Iceland Meeting : May 16-18 2012
- Los Angeles Meeting : October 26-28, 2011.
- Boston Meeting: February 9-11, 2011
- Houston Meeting: April 28-30, 2010
- Washington DC Meeting Oct 29-30, 2009
- Rotterdam Meeting: held 16-17 April 2009
- Seattle Meeting: held 9-11 July 2008
- Framingham Meeting: held 22-24 January 2008
Founding Cohorts
- Age, Gene, Environment Susceptibility (AGES)
- Atherosclerosis Risk in Communities Study (ARIC)
- Cardiovascular Health Study (CHS)
- Framingham Heart Study (FHS)
- Rotterdam Study (ERGO or RS)
Other Resources
- Please try to use text or online-viewable formats such as plain text or PDF whenever feasible. Microsoft has a plug-in for Word 2007/2010 that allows you to save documents directly to MediaWiki Format. Similar functionality is also available in OpenOffice.
- Time Zones: Useful information for setting up conference calls
- Consult the User's Guide or MediaWiki FAQ for information on using the wiki software.