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plotframe3.m.html |
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Source file: plotframe3.m
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Directory: /Users/rjl/git/rjleveque/clawpack-4.6.3/matlab
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Converted: Mon Jan 21 2013 at 20:16:02
using clawcode2html
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This documentation file will
not reflect any later changes in the source file.
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%
% PLOTFRAME3 plots data from a single Clawpack output file.
%
% PLOTFRAME3 is called from PLOTCLAW3, the driver script for Clawpack
% graphics. PLOTFRAME3 uses parameters, defined in the user's
% workspace, usually in the SETPLOT3 script, to determine what kind of
% plot to create, and various other plotting options.
%
% See SETPLOT for a complete list of the parameters that the user can
% set.
%
% There are three basic types of plots available. These are
%
% Slice plots : 3d slices, along Cartesian or mapped Cartesian
% coordinates shown.
%
% Scatter plots : Spherically symmetric data is plotted as a
% function of a 1d variable, usually the distance from a fixed point
% (x0,y0,z0). The result is a 2d line-type plot of points
% representing the data.
%
% Isosurfaces : Surfaces of constant data values are shown. These
% can be combined with slices, if desired.
%
% See SETPLOT, PLOTCLAW3, MAPPEDGRID.
if (~exist('amrdata'))
str = sprintf(['*** Plotframe3 : ''amrdata'' does not exist. call\n',...
'*** readamrdata or plotclaw3']);
error(str);
end;
if length(amrdata) == 0
disp(' ')
disp(['Frame ',num2str(Frame),'(',outputflag,') does not exist ***']);
disp(' ')
return;
end;
disp(' ');
disp(['Frame ',num2str(Frame),' at time t = ',num2str(t)]);
if exist('beforeframe')==2
% make an m-file with this name for any other commands you
% want executed before drawing each frame, for example
% if you want to use axes to specify exactly where the
% plot will be in the window, aspect ratio, etc.
beforeframe;
end
% ------------------------------------------------------------------------
% Check PlotType <= 3 inputs (slices)
% ------------------------------------------------------------------------
if (PlotType <= 3)
% The manifold option isn't used in 3d
manifold = 0;
set_value('mappedgrid','MappedGrid',0);
set_value('view_arg','UserView',3);
set_value('cvalues','ContourValues',[]);
set_value('interpmethod','InterpMethod','*linear');
if (mappedgrid == 1)
if (~exist('mapc2p'))
error('*** MappedGrid == 1 but no ''mapc2p'' function was found');
end;
end;
if (PlotType == 2)
if (isempty(cvalues))
disp(' ');
disp(' *** Warning : You have specified PlotType == 2, but have');
disp(' *** not set any contour values. Set ContourValues to a ');
disp(' *** vector of values or integer (number of contour lines). ');
end;
end;
% Change color map for schlieren plot
if (PlotType == 3)
% colormap(flipud(gray(2048)).^5)
colormap(flipud(gray(2048)).^10)
if (~isempty(cvalues))
disp(' ');
disp(' *** Warning : ContourValues is set to a non-empty matrix.');
disp(' *** Schlieren data will be contoured.');
end;
end;
set_value('xscoords','xSliceCoords',[]);
set_value('yscoords','ySliceCoords',[]);
set_value('zscoords','zSliceCoords',[]);
if (length(cvalues) == 1 & (length(amrdata) > 1 | ...
(length(xscoords) + length(yscoords) + length(zscoords) > 1)))
disp(' ');
disp(' *** Warning: Contour values will be chosen independently');
disp(' *** on each amr patch or slice. Set ContourValues to a ');
disp(' *** vector of values to insure that contour lines match ');
disp(' *** across mesh boundaries or slices.');
end;
set_value('isosurfvalues','IsosurfValues',[]);
m = length(isosurfvalues);
if (m > 0)
% now check input for isosurfaces
set_value('isoalphas','IsosurfAlphas',1);
isosurfalphas = set_length(isoalphas,m);
set_value('isc','IsosurfColors','q');
if (iscell(isc))
% In case SETPLOTSTYLE was used to to set the isosurfcolors.
isocolors = strvcat(isc);
else
isocolors = isc;
end;
isosurfcolors = set_length(isocolors,m);
versionstring = version;
version_number = str2num(versionstring(1));
for i = 1:length(isosurfalphas)
a = isosurfalphas(i);
has_opengl = strcmp(get(gcf,'Renderer'),'OpenGL');
if (a < 1 & version_number < 6)
disp(' ');
disp(' *** plotframe3: Transparency for isosurfaces supported only in')
disp(' *** Matlab versions 6 and higher.');
isosurfalphas(i) = 1;
elseif (a < 1 & has_opengl == 0)
disp(' *** Warning : The graphics renderer OpenGL is not set on your');
disp(' *** system. Use setopengl to set this renderer. Without it,');
disp(' *** isosurfaces will not appear transparent');
isosurfalphas(i) = 1;
end;
end;
else
% These won't be used...
isosurfcolors = '';
isosurfalphas = [];
end; % end of length(isosurfvalues > 0)
clear_amrplot;
create_amrplot(MaxLevels,xscoords,yscoords,zscoords,isosurfvalues);
newplot;
end; % end of PlotType <= 3
% ------------------------------------------------------------------------
% Check PlotType == 4 inputs (1d line plots)
% ------------------------------------------------------------------------
if (PlotType == 4)
view_arg = 2;
set_value('usermap1d','UserMap1d',0);
if (usermap1d == 1)
if (~exist('map1d'))
error('*** You have set UserMap1d=1, but no ''map1d'' function was found');
end;
else
if ((~exist('x0') | ~exist('y0') | ~exist('z0')))
str = sprintf(['*** plotframe3 : (x0,y0,z0) must be defined before you\n',...
'*** can do a line or scatter plot. Or, create a ''map1d''',...
' function and set UserMap1d = 1']);
error(str);
end;
end;
set_value('mappedgrid','MappedGrid',0);
if (exist('ScatterStyle'))
pstyle = ScatterStyle;
elseif (exist('LineStyle'))
pstyle = LineStyle;
else
error([' *** plotframe3 : Set either ''ScatterStyle'' or ',...
'''LineStyle''.']);
end;
if (~iscell(pstyle))
str = sprintf(['*** plotframe3 : ScatterStyle or LineStyle must be cell \n',...
'matrices. Use SETPLOTSTYLE to set either of these variables.']);
error(str);
end;
[linestyle,linecolors,markerstyle] = get_plotstyle(pstyle,MaxLevels);
clear_amrplot;
create_amrplot(MaxLevels);
newplot;
end; % end of PlotType == 4
% ------------------------------------------------------------------------
% Check PlotType == 5 inputs (deprecated isosurface plots)
% ------------------------------------------------------------------------
if (PlotType == 5)
disp(' ')
disp(' *** PlotType = 5 is no longer supported as of Clawpack 4.2')
disp(' *** Choose different setting for PlotType in setplot3.m')
disp(' *** Isosurface plots are avaiable with PlotType = 1, 2 or 3')
disp(' *** by setting IsosurfValues and IsosurfColors')
disp(' ')
end; % end of PlotType == 5
% End of input check.
% ------------------------------------------------------------------
% Store current handle data structure in the UserData property of the
% current figure, gcf.
% ---------------------------------------------------------------------
% ------------------------------------------------------------------------
% Main loop for this frame.
% ------------------------------------------------------------------------
qmin = [];
qmax = [];
ncells = [];
ngrids = length(amrdata); % length of structure array
for ng = 1:ngrids,
gridno = amrdata(ng).gridno;
level = amrdata(ng).level;
% bn_plotframeN is a global variable used in mapc2p.m if the grid
% mapping varies across the blocks.
set_blocknumber(gridno);
if (PlotData(level) == 0)
% Continue to next patch
continue;
end;
mx = amrdata(ng).mx;
my = amrdata(ng).my;
mz = amrdata(ng).mz;
xlow = amrdata(ng).xlow;
ylow = amrdata(ng).ylow;
zlow = amrdata(ng).zlow;
dx = amrdata(ng).dx;
dy = amrdata(ng).dy;
dz = amrdata(ng).dz;
data = amrdata(ng).data;
% Get grid info for plotting grid boxes.
xhigh = xlow + mx*dx;
yhigh = ylow + my*dy;
zhigh = zlow + mz*dz;
xedge = xlow + (0:mx)*dx;
yedge = ylow + (0:my)*dy;
zedge = zlow + (0:mz)*dz;
xcenter = xedge(1:mx) + dx/2;
ycenter = yedge(1:my) + dy/2;
zcenter = zedge(1:mz) + dz/2;
% for compatibility with old matlab41/plotframe3 convention:
x = xcenter;
y = ycenter;
z = zcenter;
data = data';
if (UserVariable == 1)
% User has supplied a function to convert original q variables to
% the variable which is to be plotted, e.g. Mach number, entropy.
qdata = feval(UserVariableFile,data);
q = reshape(qdata,mx,my,mz);
else
q = reshape(data(:,mq),mx,my,mz);
end
% q must be permuted so that it matches the dimensions of xcm,ycm,zcm
% created by meshgrid.
if (PlotType == 3)
% Scheieren plot; we plot the gradient, not the values.
[qx,qy,qz] = gradient(q,dx,dy,dz);
qs = sqrt(qx.^2 + qy.^2 + qz.^2);
qmesh = permute(qs,[2,1,3]);
else
qmesh = permute(q,[2,1,3]);
end;
amrdata(ng).q = qmesh;
% minimum over all grids at this time, but not necessarily on slice
% shown.
qmin = min([qmin,min(min(min(q)))]);
qmax = max([qmax,max(max(max(q)))]);
% keep count of how many cells at this refinement level:
if length(ncells) < level
ncells(level) = 0;
end;
ncells(level) = ncells(level) + mx*my*mz;
% -----------------------------------------------
% plot commands go here
if PlotType <= 3
sliceCoords = {xscoords, yscoords, zscoords};
sdirs = {'x','y','z'};
maskflag = 1; % Mask out patch areas
for idir = 1:3, % Loop over directions
slicevals = sliceCoords{idir}; % user specified slice constants
sdir = sdirs{idir};
% Loop over all slices that cube of data qmesh might intersect
for n = 1:length(slicevals),
sval = slicevals(n);
[isect,qcm2] = interp_data_3d(xcenter,ycenter,zcenter,...
xedge,yedge,zedge,qmesh,sdir,sval,interpmethod);
if (isect == 1) % qmesh intersects a user specified slice.
% This command adds a patch to the appropriate slice
add_patch2slice(sdir,sval, n,xcenter,ycenter,zcenter,...
xedge,yedge,zedge,qcm2,level,...
cvalues,mappedgrid, manifold,maskflag,ng);
end;
end;
end;
% Add cube to plot - whether it is visible or not depends on how user
% set PlotCubeEdges.
add_cube2plot(xedge,yedge,zedge,level,mappedgrid);
% Add isosurfaces to plot
add_isosurface2plot(xcenter,ycenter,zcenter,q,level,isosurfvalues,...
isosurfcolors,isosurfalphas,mappedgrid);
end; % End plotting for PlotType == 3
if (PlotType == 4)
% 1d Line plots
[xcm,ycm,zcm] = meshgrid(xcenter,ycenter,zcenter);
if (usermap1d == 1)
if (usermap1d == 1)
if (mappedgrid == 1)
[xpm,ypm,zpm] = mapc2p(xcm,ycm,zcm);
[rvec,qvec] = map1d(xpm,ypm,zpm,qmesh);
else
[rvec,qvec] = map1d(xcm,ycm,zcm,qmesh);
end
[rs,cs] = size(rvec);
[rq,cq] = size(qvec);
if (cs > 1 | cq > 1)
error(['plotframe3 : map1d can only return single columns vectors ',...
'for s or q']);
end;
else
if (mappedgrid == 1)
[xpm,ypm,zpm] = mapc2p(xcm,ycm,zcm);
r = sqrt((xpm - x0).^2 + (ypm - y0).^2 + (zpm - z0).^2);
else
r = sqrt((xcm - x0).^2 + (ycm - y0).^2 + (zcm - z0).^2);
end;
rvec = reshape(r,prod(size(r)),1);
qvec = reshape(qmesh,prod(size(qmesh)),1);
end;
add_line2plot(rvec,qvec,level,markerstyle{level},...
linecolors{level},linestyle{level});
end; % end of plotting for PlotType == 4
if exist('aftergrid')==2
% make an m-file with this name for any other commands you
% want executed at the end of drawing each grid
aftergrid;
end;
end % loop on ng (plot commands for each grid)
% -----------------------------------------------------
set(gca,'FontName','helvetica');
if UserVariable == 1
str = sprintf('%s at time %8.4f',UserVariableFile,t);
title(str,'fontsize',15);
else
str = sprintf('q(%d) at time %8.4f',mq,t);
title(str,'fontsize',15);
end
% Set user defined grid details, from setplot3.m
if (PlotType <= 3)
setPlotGrid(PlotGrid);
setPlotGridEdges(PlotGridEdges);
setPlotCubeEdges(PlotCubeEdges);
if (PlotType == 2)
setslicecolor('w');
end;
% Now plot intersections of x-y planes, x-z planes and y-z planes.
create_sliceintersections(mappedgrid);
xlabel('x')
ylabel('y')
zlabel('z')
end;
view(view_arg);
if exist('afterframe')==2
afterframe % make an m-file with this name for any other commands you
% want executed at the end of drawing each frame
% for example to change the axes, or add a curve for a
% boundary
end;
end