< Bibliography 2010-2019
Friday Harbor Laboratories

List of FHL Publications 2010-present

|  2000 to 2009  | 1990 to 1999 1989 and before


2015

Balaban, J.P., A.P. Summers, and C.D. Wilga. 2015. Material properties of the hyomandibula in four shark species. J. Exp. Zool., 323A:1-9.

Carrington, E., J.H. Waite, G. Sara and K. Sebens, 2015. Mussels as a model system for integrative ecomechanics. Annual Review of Marine Science 7: 443-469.

Hayford, H., S.E. Gilman and E. Carrington, 2015. Foraging behavior minimizes exposure to thermal stress in a tidal predator. Mar. Ecol. Prog. Ser. 518:165-175

Murray, J.W., E. Roberts, E. Howard, M. O’Donnell, C. Bantam, E. Carrington M. Foy, B. Paul, A. Fay, 2015. An inland sea high nitrate-low chlorophyll (HNLC) region with naturally high pCO2. Limnol. Oceanogr., accepted.



2014

Andersen, R.A., Kim, J.I., Tittley, I., Yoon, H.S. 2014. A re-investigation of Chrysotila (Prymnesiophyceae) using material collected from the type locality. Phycologia Volume 53 (5), 463–473

Burnaford, J.L., K.J. Nielsen, and S.L. Williams 2014. Celestial mechanics affects emersion time and cover patterns of an ecosystem engineer, the intertidal kelp Saccharina sessilis. Marine Ecology Progress Series 509: 127-136.

Carrington, E., 2013. High-endurance algae. Nature 503:345-346.

Cannon, J.T., K. M. Kocot, D. S. Waits, D. A. Weese, B. J. Swalla, S. R. Santos, and K. M. Halanych. 2014. Phylogenomic resolution of the hemichordate and echinoderm clade. Current Biology 24: 2827-2832.

Clarke, M.E., C.E. Whitmire and M. M. Yoklavich. In press. State of the Deep Sea Coral and Sponge Ecosystems Off the U.S. Pacific Coast: 2014. On-line NOAA Tech. Memo.

Colvard, N., E. Carrington and B Helmuth, 2014. Withstanding the heat: will increasing seawater temperatures affect net photosynthesis of Fucus gardneri? J. Exp. Mar. Biol. Ecol., 458:6-12.

Cook, D.G., Brown, E.J.,  Lefevre, S., Domenici, P., Steffensen, J.F. 2014. The response of striped surfperch Embiotoca lateralis to progressive hypoxia: Swimming activity, shoal structure, and estimated metabolic expenditure. Journal of Experimental Marine Biology and Ecology 460, 162-169

Crofts S.B., Summers A.P. 2014. How to best smash a snail: the effect of tooth shape on crushing load. J. R. Soc. Interface 11: 20131053.

Elahi, R. and K.P. Sebens. 2014. Experimental removal and recovery of subtidal grazers highlights the importance of functional redundancy and temporal context. PLoS One. 8(11): e78969. doi:10.1371/journal.pone.0078969

Gemmell, B.J., J.H. Costello, S.P. Colin. 2014. Exploring vortex enhancement and manipulation mechanisms in jellyfish that contributes to energetically efficient propulsion. Communicative & Integrative Biology 7:I, e29014.

George, MN and E. Carrington, 2014. Do spines matter? Implications of streamlining behavior for drift capture in three sea urchins. J. Exp. Mar. Biol. Ecol. 461:102-106.

Groner ML, Burge CA, Couch CS, Kim CJS, Siegmund G-F, Singhal S, Smoot S, Jarrell A, Gaydos JK, Harvell CD, Wyllie-Echeverria S. 2014. Host demography influences the prevalence and severity of eelgrass wasting disease. Diseases of Aquatic Organisms 108: 165-175.

Halanych, K.M., and K.M. Kocot. 2014. Repurposed transcriptomic data facilitate discovery of innate immunity Toll-Like Receptor (TLRs) genes across Lophotrochozoa. Biological Bulletin 227: 201-209.

Hannam, M.P. and S. Wyllie-Echeverria. (accepted with revision). Microtopography Promotes Coexistence of an Invasive Seagrass and its Native Congener. Biological Invasions.

Kleinteich T, Conway KW, Gorb SN & Summers AP. 2014. What’s inside a fishy suction cup? Bruker microCT User meeting 2014: 80 – 84.

Longley, Roger D., 2014. Pedal sole immunoreactive axons in terrestrial pulmonates: Limax, Arion and Helix. Biol. Bull. 226:19-28 (Feb 2014).

Lucas, K.N., N. Johnson, W.T. Beaulieu, E. Cathcart, G. Tirrell, S.P. Colin, B.J. Gemmell, J.O. Dabiri, J.H. Costello. 2014. Bending rules for animal propulsion. Nature Commun. DOI: 10.1038/ncomm4293.

Lucon-Xiccato, T.,  Nati, J.J..H.,  Blasco, F.R.,  Johansen, J.L.,  Steffensen, J.F.,  Domenici, P. 2014 . Severe hypoxia impairs lateralization in a marine teleost fish. Journal of Experimental Biology. doi: 10.1242/​jeb.111229

MoranG, C. and L.A. Ferry. 2014. Bite force and feeding kinematics in the eastern North Pacific Kyphosidae. J. Exper. Zoology, Part A. 321:189-197.

Moroz L.L., K.M. Kocot, M. R. Citarella, S.Dosung, T. P. Norekian, Inna S. Povolotskaya, Anastasia P. Grigorenko, Christopher Dailey, Eugene Berezikov, Katherine M. Buckley, Andrey Ptitsyn, Denis Reshetov, Krishanu Mukherjee, Tatiana P. Moroz, Yelena Bobkova, Fahong Yu, Vladimir V. Kapitonov, Jerzy Jurka, Yuri V. Bobkov, Joshua J. Swore, David O. Girardo, Alexander Fodor, Fedor Gusev,Rachel Sanford, Rebecca Bruders et al. The ctenophore genome and the evolutionary origins of neural systems. Nature 510, 109–114 (05 June 2014)

Newton, J.A., R.A. Feely, E.B. Jewett, P. Williamson, and J. Mathis. 2014. Global Ocean Acidification Observing Network: Requirements and Governance Plan. IAEA. 57 pp.

Nishizaki, M.T. and E. Carrington, 2014. Temperature and water flow influence feeding behavior and success in the barnacle Balanus glandula. Mar Ecol Prog Ser 507: 207–218.

Nishizaki, M.T. and E Carrington, 2014. The effect of water temperature and flow on respiration in barnacles: patterns of mass transfer versus kinetic limitation. J. Exp. Biol., 217:2101-2109.

Orellana, M.V. and C. Leck. 2014. Marine gels. In Hansel, D.A. & Carlson, C.A. Biogeochemistry of Dissolved Organic Carbon. 2nd Edition. Academic Press.

Ort, B.S., S. Cohen, K.E. Boyer L. Reynolds and S. Wyllie-Echeverria. (accepted). Conservation of Eelgrass(Zostera marina) genetic Diversity in a Mesocosm-Based Restoration Experiment. PLoS One.

Padilla, D.K., Daniel, T.L., Dickinson, P.S., Grünbaum, D., Hayashi C., Manahan, D.T., Marden, J.H., Swalla, B.J., Tsukimura, B. 2014. Addressing grand challenges in organismal biology - the need for synthesis. BioScience 64: 1178-1187.

Pfister, CA. A. Esbaugh, C. Frieder, H. Baumann, E. Bockmon, M. White, B. Carter, H. Benway, C. Blanchette, E. Carrington, J. McClintock, D. McCorkle, W. McGillis, T. A. Mooney, P. Ziveri, 2014. Detecting the unexpected: a research framework for ocean acidification. Environmental Science and Technology 48:9982-9994.

Roche, D.G., Taylor, M.K., Binning, S.A., Johansen, J.L.,  Domenici, P., Steffensen, J.F. 2014.  Unsteady flow affects swimming energetics in a labriform fish (Cymatogaster aggregata). Journal of Experimental Biology 217 (3), 414-422  (2014).

Strathmann, R. R. 2014. Culturing larvae of marine invertebrates. In: D. J. Carroll and S. A. Stricker, eds. Developmental Biology of the Sea Urchin and Other Marine Invertebrates: Methods and Protocols. Humana Press (proofed, in press)

Strathmann, R. R. 2014. Do functional requirements for embryos and larvae have a place in Evo-Devo? In: Conceptual Change in Biology: Scientific and Philosophical Perspectives on Evolution and Development, ed. A.C. Love. Boston Studies in the Philosophy and History of Science. Berlin: Springer. (proofed, in press)

Sutherland, K. R., J.H. Costello, S.P. Colin, J.O. Dabiri. 2014. Ambient fluid motions influence swimming and feeding by the ctenophore Mnemiopsis leidyi. J. Plankton Res. 36: 1310–1322.

Tallis, H, J Lubchenco…with E Carrington and 237 other co-signatories, 2014. Working together: a call for inclusive conservation. Nature 515:27-28.

Tjernström, M., C. Lec, C. E. Birch, J. W. Bottenheim, B. J. Brooks, I. M. Brooks, L. Bäcklin, R.Y.-W. Chang, G. de Leeuw, L. Di Liberto, S. de la Rosa, E. Granath, M. Graus, A. Hanse, J. Heintzenberg, A. Held, A. Hind, P. Johnsto, J. Knulst, M. Martin, P. A. Matrai, T. Mauritsen, M. Müller, S. J. Norris, M.V. Orellana, D. A. Orsini, J. Paatero, P. O. G. Persson, Q. Gao, C. Rauschenberg, Z. Ristovsk, J. Sedlar, M. D. Shupe, B. Sierau, A. Sirevaag, S. Sjogren, O. Stetzer, E. Swietlicki, M. Szczodrak, P. Vaattovaara, N. Wahlberg, M. Westberg, and C. R. Wheeler. 2014. The Arctic Summer Cloud Ocean Study (ASCOS): overview and experimental design. Atmos. Chem. Phys., 14, 2823–2869, www.atmos-chem-phys.net/14/2823/2014/ doi:10.5194/acp-14-2823-2014

Wynne, M.J., Andersen, R.A., Graf, L., and Yoon, H.S. 2014. Aureoscheda, a new genus of marine Pelagophyceae from the Bahamas, Caribbean Sea. Phycologia Volume 53 (5), 513–522 Published 27 October 2014

Zanol. J., K.M. Halanych, K. Fauchald. 2014. Reconciling taxonomy and phylogeny in the bristleworm family Eunicidae (polychaete, Annelida). Zoologica Scripta 43: 79-100.



2013

Alderks, P.W. and Sisneros J.A. 2013. Development of the acoustically evoked behavioral response in larval plainfin midshipman fish, Porichthys notatus. Public Library of Science One 8(12):e82182.

Babarro, J.M.F and E. Carrington, 2013. Attachment strength of the mussel Mytilus galloprovincialis: effect of habitat and body size. J. Exp. Mar. Biol. Ecol, 443:188-196.

Bhandiwad, A.A., Zeddies, D.G., Raible, D.W., Rubel, E.W. and Sisneros, J.A. 2013. Auditory sensitivity of larval zebrafish (Danio rerio) measured using a behavioral prepulse inhibition assay. Journal of Experimental Biology 216:3504-3513.

Bohórquez-Herrera, J., Kawano, S.M., Domenici, P. 2013. Foraging behavior delays mechanically-stimulated escape responses in fish. Integr. Comp. Biol. (2013) 53 (5): 780-786 doi:10.1093/icb/ict031.

Broell, F., Noda, T., Wright, S., Domenici, P., Steffensen, J.F.,  Auclair, J-P., Taggart, C.T. 2013.
Accelerometer tags: detecting and identifying activities in fish and the effect of sampling frequency
Journal of Experimental Biology 216 (7), 1255-1264.

Cannon J. T., B. J. Swalla, and K. M. Halanych 2013. Hemichordate molecular phylogeny reveals a novel cold-Water clade of Harrimaniid acorn worms. Biol. Bull. 225: 194–204.

Carrington, E., 2013. High-endurance algae. Nature 503:345-346.

Cota, C. D., Segade, F., & Davidson, B. (2013). Heart genetics in a small package, exploiting the condensed genome of Ciona intestinalis. Briefings in functional genomics. doi:10.1093/bfgp/elt034

Demes, K.W., C.D.G. Harley, L.M. Anderson and E. Carrington, 2013. Shifts in morphological and mechanical traits compensate for performance costs of reproduction in a wave-swept seaweed. Journal of Ecology, 101:963-970.

Demes, K.W., J.N. Pruitt, C.D.G. Harley, E. Carrington, 2013. Survival of the weakest: Increased frond mechanical strength in a wave-swept kelp inhibits self-pruning and increases whole-plant mortality. Functional Ecology, 27:439-445.

Ditsche, Petra, Jan Michels, Alexander Kovalev, Jochen Koop and Stanislav Gorb More than just slippery: the impact of biofilm on the attachment of non-sessile freshwater mayfly larvaeJ. 2013. R. Soc. Interface 2014 11, 20130989

Dooley, F., S. Wyllie-Echeverria, E. Van Volkenburg. 2013. Seed storage and viability of Zostera marina. Aquatic Botany 111:130-134

Elahi, R. and K. P. Sebens. 2012. Consumers mediate natural variation between prey richness and resource use in a benthic marine community. Marine Ecology Progress Series 452:131-143

Elahi, R., Dwyer, T., Turner, K.R., Birkeland, C.B., and K.P. Sebens. 2013. Limited change in the diversity and structure of subtidal communities over four decades. Marine Biology 160:3209-3219

Elahi, R. and K. Sebens. 2013. Mesoscale variability in oceanographic retention sets the abiotic stage for subtidal benthic diversity. Marine Ecology Progress Series (in press) doi:10.3354/meps10642.

Elahi, R. and K.P. Sebens. 2014. Experimental removal and recovery of subtidal grazers highlights the importance of functional redundancy and temporal context. PLoS One. 8(11):e78969. doi:10.1371/journal.pone.0078969

Gaylord B., J. Hodin and M.C. Ferner (2013) Turbulent shear spurs settlement in larval sea urchins. Proc. Natl. Acad. Sci. USA 110: 6901-6906. http://www.stanford.edu/~seastar/pdf/Gaylord_etal_2013.pdf

George, M.N., O'Donnell, M.J., and E. Carrington. 2013. Mussel byssus attachment weakened by ocean acidification. Nature Climate Change 3, 587-590.

Greene, C.H., Meyer-Gutbrod, E.L., Monger, B.C., McGarry, L.P., and 15 others. MERCINA Working Group. Remote climate forcing of decadal-scale regime shifts in Northwest Atlantic shelf ecosystems. Limnology and Oceanography 58(3): 803-816.

Groner, M.L., Burge, C.A., Couch, C.S., Kim, C.J.S., Siegmund, G-F, Singhal, S., Smoot S.C., Jarrell, A., Gaydos, J.K., Harvell, C.D., and Wyllie-Echeverria, S. (in press) Host demography influences the prevalence and severity of eelgrass wasting disease. Diseases of Aquatic Organisms

Jaeckle, W. B., and R. R. Strathmann 2013. The anus as a second mouth: anal suspension feeding by an oral deposit-feeding sea cucumber. Invertebrate Biology (in press)

Halanych, K. M., J. T. Cannon, A. R. Mahon, B. J. Swalla, and C. R. Smith. 2013. Modern Antarctic acorn worms form tubes. Nature Comm. 3738: 1-4.

Longley R.D, Peterman, M. 2013. Neuronal control of pedal sole cilia in the pond snail Lymnaea stagnalis appressa. J Comp Physiol A (2013) 199:71-86.

Lowe, A.T., Galloway AW, EA Sosik, JS Yeung*, DO Duggins. 2013. Fatty acids and stable isotope biomarkers suggest microbe-induced differences in benthic food webs between depths. Limnology and Oceanography 58(4): 1451-1462.

Maliska, M. E., M. W. Pennell, and B. J. Swalla. 2013. Developmental mode influences diversification in ascidians. Biology Letters 9: 20130068.

McKee, A., Voltzow, J. and Pernet, B. 2013. Substrate attributes determine gait in a terrestrial gastropod. Biological Bulletin 224: 53-61.

Motonori, H., M. B. Hille, B. J. Swalla, and M. Iwata. 2013. Arthur H. Whiteley (1916-2013). Zoological Science 30: 693-693.

Mumford, T. F. 2013. Section 4.3 Marine Algae, Seagrasses and Salt Marsh Vegetation. In: Miller, I.M., Shishido, C., Antrim, L, and Bowlby, C.E. Climate Change and the Olympic Coast National Marine Sanctuary: Interpreting Potential Futures. Marine Sanctuaries Conservation Series ONMS-13-01. U.S. Department of Commerce, National Oceanic and Atmospheric Administration, Office of National Marine Sanctuaries, Silver Spring, MD. 238 pp.

Norton, J. Cooley, J. Islam, T., Cota, C. and Davidson, B. (2013) Matrix adhesion directs asymmetric heart progenitor specification in the basal chordate, Ciona intestinalis. Development, 140(6), 1301-11. [DOI:10.1242/dev.085548]

O'Donnell, M.J., George, M.N. and E. Carrington, 2013. Ocean acidification weakens mussel byssus attachment. Nature Climate Change, 3:587-590. (Cover photo in early June 2013 issue)

Padilla, D.K., Savado, M. 2013. A systematic review of phenotypic plasticity in marine invertebrate and plant systems. Advances in Marine Biology 65:67-94.

Paig-Tran, E.W.M., Kleinteich, T. & Summers, A.P. 2013. The filter pads and filtration mechanisms of the devil rays: variation at macro and microscopic scales. J Morphol 274: 1026 – 1043.

Penniman, J.R., M.K. Doll and A. Pires. 2013. Neural correlates of settlement in veliger larvae of the gastropod, Crepidula fornicata. Invertebr. Biol. 132: 14-26.

Peterson, K.J., Yi-H. Su, M. I. Arnone, B. J. Swalla, and B. King. 2013. microRNAs support the monophyly of enteropneust hemichordates. J. Exp. Zoolog. B Mol. Dev. Evol. 9999B: 1–7.

Petersen, C.L., †Timothy, M., *Kim, S.D., Bhandiwad, A.A., Mohr, R.A., Sisneros, J.A., and Forlano, P.M. 2013. Exposure to advertisement calls of reproductive competitors activates vocal-acoustic and catecholaminergic neurons in the plainfin midshipman fish, Porichthys notatus. Public Library of Science ONE 8(8): e70474. doi: 10.1371/journal.pone.0070474

Petersen, C.L., Timothy M, Kim DS, Bhandiwad AA, Mohr RA, Sisneros JA, and PM Forlano. 2013. Exposure to advertisement calls of reproductive competitors activates vocal-acoustic and catecholaminergic neurons in the plainfin midshipman fish, Porichthys notatus. Public Library of Science One 8(8):e70474

Pearse, J.S., Carr, M.H., Baxter, C.H., Wantanabe, J.W., Foster, M.S., Steller, D.L., Coyer, J.A., Konar, B., Duggins, D.O., Dayton, P.K. 2013. Kelpbeds as Classrooms: Perspectives and Lessons Learned. IN. Research and Discoveries: The Revolution of Science through SCUBA. M.A. Lang, R.L. Marinelli, S.J. Roberts, P.K. Taylor. Eds. Smithsonian Institution Scholarly Press.

Purushothaman, J., L. Al Kharusi, C.E. Mills, H. Ghielani, and M. Al Marzouki, 2013. Timoides agassizii Bigelow, 1904, little-known hydromedusa (Cnidaria), appears briefly in large numbers off Oman, March 2011, with additional notes about species of the genus Timoides. Zootaxa, 3746 (2): 372-382.

Ruesink, J.L., A.C. Trimble, H. Berry, A.G. Sprenger, M.N. Dethier (2013). Environmental correlates of growth and stable isotopes in intertidal species along an estuarine fjord. Estuaries and Coasts. June 2013.

Sebens, K.P., G. Bernardi , M.R. Patterson, and D. Burkepile. 2012. Saturation Diving and Underwater Laboratories: How Underwater Technology Has Aided Research on Coral Biology and Reef Ecology. In: M. Lang ed. Research and Discoveries: The Revolution of Science through SCUBA. Smithsonian Inst. Scholarly Press. Smithsonian Contributions to the Marine Sciences. No. 39. pp 39-52.

Shoemaker, G. and S. Wyllie-Echeverria. 2013. Occurrence of rhizomal endophytes in three temperate Northeast Pacific seagrasses. Aquatic Botany 111:71-73.

Stricker, S. A., and B. J. Swalla. 2013. Arthur H. Whiteley (1916-2013). Mol Reprod Dev. 80:Fmi-Fmiii.

Stricker, S.A., Cline, C., and Goodrich, D. 2013. Oocyte maturation and fertilization in marine nemertean worms: using similar sorts of signaling pathways as in mammals, but often with differing results. Biol. Bull. 224: 137-155.

Vaughn, D, O. Turnross and E. Carrington, 2013. Sex-specific temperature dependence of foraging and growth of intertidal snails. Marine Biology, DOI 10.1007/s00227-013-2316-3.

Wainwright DK, Kleinteich T, Kleinteich A, Gorb SN & Summers AP. 2013. Stick tight: suction adhesion on irregular surfaces in the northern clingfish. Biol Lett 9: 20130234



2012

Appeltans, W., C. E. Mills, G. Lambert, B. J. Swalla et al. (120 authors) . 2012. The magnitude of global marine species diversity. Current Biology 22: 2189-2202.

Arellano, S. M., A. M. Reitzel, and C. A. Button. 2012. Variation in vertical distribution of sand dollar larvae relative to haloclines, food, and fish cues. Journal of Experimental Marine Biology and Ecology 414:28-37.Zielke, N., K. J. Kim, V. Tran, S. T. Shibutani, M. J. Bravo, S. Nagarajan, M. van Straaten, B. Woods, G. von Dassow, C. Rottig, C. F. Lehner, S. S. Grewal, R. J. Duronio, and B. A. Edgar. 2011. Control of Drosophila endocycles by E2F and CRL4(CDT2). Nature 480:123-U296.

Ayres, K. L., R. K. Booth, J. A. Hempelmann, K. L. Koski, C. K. Emmons, R. W. Baird, K. Balcomb-Bartok, M. B. Hanson, M. J. Ford, and S. K. Wasser. 2012. Distinguishing the Impacts of Inadequate Prey and Vessel Traffic on an Endangered Killer Whale (Orcinus orca) Population. Plos One 7.

Bhattacharya, D., D. C. Price, H. S. Yoon, E. C. Yang, N. J. Poulton, R. A. Andersen, and S. P. Das. 2012. Single cell genome analysis supports a link between phagotrophy and primary plastid endosymbiosis. Scientific Reports 2.

Boedeker, C., C. J. O'Kelly, W. Star, and F. Leliaert. 2012. Molecular phylogeny and taxonomy of the Aegagropila clade (Cladophorales, Ulvophyceae), including the description of Aegagropilopsis Gen. Nov and Pseudocladophora Gen. Nov. Journal of Phycology 48:808-825.

Britton-Simmons, K. H., A. L. Rhoades, R. E. Pacunski, A. W. E. Galloway, A. T. Lowe, E. A. Sosik, M. N. Dethier, and D. O. Duggins. 2012. Habitat and bathymetry influence the landscape-scale distribution and abundance of drift macrophytes and associated invertebrates. Limnology and Oceanography 57:176-184.

Brown, F. D., and B. J. Swalla. 2012. Evolution and development of budding by stem cells: Ascidian coloniality as a case study. Developmental Biology 369:151-162.

Clark, A. J., and A. P. Summers. 2012. Ontogenetic scaling of the morphology and biomechanics of the feeding apparatus in the Pacific hagfish Eptatretus stoutii. Integrative and Comparative Biology 52:E31-E31.

Condon, R. H., W. M. Graham, C. M. Duarte, K. A. Pitt, C. H. Lucas, S. H. D. Haddock, K. R. Sutherland, K. L. Robinson, M. N. Dawson, M. B. Decker, C. E. Mills, J. E. Purcell, A. Malej, H. Mianzan, S. I. Uye, S. Gelcich, and L. P. Madin. 2012. Questioning the rise of gelatinous zooplankton in the world's oceans. Bioscience 62:160-169.

Corning, P. A. 2012. The re-emergence of emergence, and the causal role of synergy in emergent evolution. Synthese 185:295-317.

Dean, M. N., A. P. Summers, and L. A. Ferry. 2012. Very low pressures drive ventilatory flow in chimaeroid fishes. Journal of Morphology 273:461-479.

Dethier, M. N., J. Ruesink, H. Berry, and A. G. Sprenger. 2012. Decoupling of recruitment from adult clam assemblages along an estuarine shoreline. Journal of Experimental Marine Biology and Ecology 422:48-54.

Ditsche, Petra, Jan Michels, Alexander Kovalev, Jochen Koop and Stanislav Gorb. 2013. More than just slippery: the impact of biofilm on the attachment of non-sessile freshwater mayfly larvaeJ. R. Soc. Interface 2014 11, 20130989

Domnitz, S. B., M. Wagenbach, J. Decarreau, and L. Wordeman. 2012. MCAK activity at microtubule tips regulates spindle microtubule length to promote robust kinetochore attachment. Journal of Cell Biology 197:231-237.

Elahi, R., and K. P. Sebens. 2012. A consumer one-two punch: facilitation and functional diversity prevent reversals in community state. Integrative and Comparative Biology 52:E53-E53.

Elahi, R., and K. P. Sebens. 2012. Consumers mediate natural variation between prey richness and resource use in a benthic marine community. Marine Ecology-Progress Series 452:131-143.

Fearnbach, H., J. Durban, K. Parsons, and D. Claridge. 2012. Photographic mark-recapture analysis of local dynamics within an open population of dolphins. Ecological Applications 22:1689-1700.

Fearnbach, H., J. Durban, K. Parsons, and D. Claridge. 2012. Seasonality of calving and predation risk in bottlenose dolphins on Little Bahama Bank. Marine Mammal Science 28:402-411.

Feely R.A., T. Klinger, J. Newton, and M. Chadsey. 2012. Scientific Summary of Ocean Acidification in Washington State Marine Waters. NOAA ORR Special Report. 157 pp.

Galloway, A. W. E., K. H. Britton-Simmons, D. O. Duggins, P. W. Gabrielson, and M. T. Brett. 2012. Fatty Acid Signatures Differentiate Marine Macrophytes at Ordinal and Family Ranks. Journal of Phycology 48:956-965.

George, Sophie B., Johnson, Tiffany, and Tanya Pia. 2012. Single and multiple fluctuations in salinity affect growth, development and metamorphosis of the sea star Pisaster ochraceus. Journal of Plankton research. 34: 590-601.

Hoekstra, L. A., L. L. Moroz, and A. Heyland. 2012. Novel Insights into the echinoderm nervous system from histaminergic and FMRFaminergic-like cells in the sea eucumber Leptosynapta clarki. Plos One 7.

Jaeckle, W. B., and R. R. Strathmann. 2012. The anus as a second mouth: Anal suspension-feeding by an oral deposit-feeding sea cucumber. Integrative and Comparative Biology 52:E269-E269.

Kleinteich, T., H. C. Maddin, J. Herzen, F. Beckmann, and A. P. Summers. 2012. Is solid always best? Cranial performance in solid and fenestrated caecilian skulls. Journal of Experimental Biology 215:833-844.

Kohn, A. B., M. R. Citarella, K. M. Kocot, Y. V. Bobkova, K. M. Halanych, and L. L. Moroz. 2012. Rapid evolution of the compact and unusual mitochondrial genome in the ctenophore, Pleurobrachia bachei. Molecular Phylogenetics and Evolution 63:203-207.

Kuehnel, S., J. Herzen, T. Kleinteich, F. Beckmann, and A. Kupfer. 2012. The female cloaca of an oviparous caecilian amphibian (Gymnophiona): functional and seasonal aspects. Acta Zoologica 93:208-221.

Lowe, A. T., R. M. Ross, L. B. Quetin, M. Vernet, and C. H. Fritsen. 2012. Simulating larval Antarctic krill growth and condition factor during fall and winter in response to environmental variability. Marine Ecology-Progress Series 452:27-43.

Luttrell, S., C. Konikoff, A. Byrne, B. Bengtsson, and B. J. Swalla. 2012. Ptychoderid hemichordate neurulation without a notochord. Integrative Comparative Biology 52: 829-834.

Macesic, L. J., and A. P. Summers. 2012. Flexural stiffness and composition of the batoid propterygium as predictors of punting ability. Journal of Experimental Biology 215:2003-2012.

Mackie, G.O., Meech, R.W., and Spencer, A.N. (2012). A new inhibitory pathway in the jellyfish Polyorchis penicillatus. Can. J. Zool. 90, 172–181.

Markova, O., J. Alberts, E. Munro, and P. F. Lenne. 2012. Bond flexibility and low valence promote finite clusters of self-aggregating particles. Physical Review Letters 109.

McDonald, K. A. 2012. Earliest ciliary swimming effects vertical transport of planktonic embryos in turbulence and shear flow. Journal of Experimental Biology 215:141-151.

Miranda, L. S., M. A. Haddad, C. E. Mills, and A. C. Marques. 2012. Lucernariopsis capensis Carlgren, 1938 (Cnidaria, Staurozoa) in Brazil: first record outside its type locality in South Africa. Zootaxa:60-64.

Neufeld, C. J. 2012. Barnacle appendage plasticity: Asymmetrical response time-lags, developmental mechanics and seasonal variation. Journal of Experimental Marine Biology and Ecology 429:20-27.

Neufeld, C. J., and C. Rankine. 2012. Cuticle and muscle variation underlying phenotypic plasticity in barnacle feeding leg and penis form. Invertebrate Biology 131:96-109.

Ooishi, S. 2012. Two new species of Botryllophilus (Copepoda: Cyclopoida: Ascidicolidae) living in compound ascidians from Madagascar. Proceedings of the Biological Society of Washington 125:122-144.

Orians, G.H., M. Dethier, C. Hirshman, A. Kohn, D. Patten, and T. Young. 2012. Sound Indicators: A Review for the Puget Sound Partnership. Washington State Academy of Sciences, Olympia, Wa. 102 pp.

Ort, B. S., C. S. Cohen, K. E. Boyer, and S. Wyllie-Echeverria. 2012. Population structure and genetic diversity among eelgrass (Zostera marina) beds and depths in San Francisco Bay. Journal of Heredity 103:533-546.

Passamaneck, Y.J., Martindale, M.Q. 2012. Cell proliferation is required for regeneration in the cnidarian Nematostella vectensis. BMC Developmental Biology, 12:34.

Przeslawski, R., Perino, L.L., Padilla, D. 2012. Effects of larval density and food rations on the larval development of an ecologically important bivalve (Mercenaria mercenaria). Molluscan Research 32: 27-35.

Rogers-Bennett, L., C. Juhasz, K. Hubbard, and C. Button. 2012. Management procedures, biological reference points and decision rules for managing and tecovering abalone populations in California. Journal of Shellfish Research 31:341-341.

Ruesink, J.L., A.C. Trimble, H. Berry, A.G. Sprenger, M.N. Dethier (2013). Environmental correlates of growth and stable isotopes in intertidal species along an estuarine fjord. Estuaries and Coasts. June 2013.

Santagata, S., Resh, C., Hejnol, A., Martindale, M.Q., Passamaneck, Y.J., 2012. Development of the larval anterior neurogenic domains of Terebratalia transversa (Brachiopoda) provides insights into the diversification of larval apical organs and the origin of the protostome nervous system. EvoDevo, 3:3. Highly accessed.

Swore, J., Swalla, B., Moroz, L., Kohn., (2012) The Origins of Neurons and use of Glutamatergic Signaling in the Ctenophore: Pleurobrachia bachei Friday Harbor Laboratories Library

van der Meijden, A., T. Kleinteich, and P. Coelho. 2012. Packing a pinch: functional implications of chela shapes in scorpions using finite element analysis. Journal of Anatomy 220:423-434.

VanBlaricom, G. R., A. W. E. Galloway, K. McPeek, J. L. Price, J. R. Cordell, M. N. Dethier, D. A. Armstrong, and P. S. McDonald. 2012. Effects of predator exclusion structures as agents of ecological disturbance to infaunal communities in geoduck clam aquaculture plots in southern Puget Sound, Washington, USA. Journal of Shellfish Research 31:355-355.

Verdugo, P. 2012. Marine Microgels. Annual Review of Marine Science, Vol 4 4:375-400.

Whippo, R., A. T. Lowe, and K. H. Britton-Simmons. 2012. Benthic community structure mediated by the red sea urchin Strongylocentrotus franciscanus in the San Juan Archipelago. Integrative and Comparative Biology 52:E348-E348.

Yang, E. C., G. H. Boo, H. J. Kim, S. M. Cho, S. M. Boo, R. A. Andersen, and H. S. Yoon. 2012. Supermatrix data highlight the phylogenetic relationships of photosynthetic stramenopiles. Protist 163:217-231.




2011

Collins, A.G., Bentlage, B., Gillan, W., Lynn, T.H., Morandini, A.C., Marques, A.C. (2011) Naming the Bonaire banded box jelly, Tamoya ohboya, n.sp. (Cnidaria: Cubozoa: Carybdeida: Tamoyidae). Zootaxa: 2753: 53-68.

Freamo H, O'Reilly P, Berg PR, Lien S, Boulding EG. In press. Identification of non-neutral single nucleotide polymorphisms (SNPs) that confirm genetic structure between inner and outer Bay of Fundy metapopulations of Atlantic salmon (Salmo salar). invited manuscript Mol Ecol Res special issue SNP Workshop III: SNP Discovery and Applications in Non-model organisms. March 22-24, 2010 Blaine WA, USA.

Gidmark, N.J., Strother, J.A, Horton, J.M. Summers, A.P. and E.L. Brainerd. 2011. Locomotory transition from water to sand and its effects on undulatory kinematics in sand lances (Ammodytidae). Journal of Experimental Biology. 214: 657-664.

Gabrielson, P.W., Miller, K.A., Martone, P. 2011. Morphometric and molecular analyses confirm two distinct species of Calliarthron (Corallinales, Rhodophyta), a genus endemic to the northeast Pacific. Phycologia (2011) Volume 50 (3), 298–316.

Iwata, F. 2011. Peavinenemertes whiteleyi, new genus, new species, a swimming heteronemertean from Washington state, U.S.A. Proceedings of the Biological Society of Washington 124(3): 147-164.

Iyengar, E.V. and C.D. Harvell. 2001. Predator deterrence of early developmental stages of
temperate lecithotrophic asteroids and holothuroids. Journal of Experimental Marine Biology and Ecology. 264: 171-188.

Lacy, J.R., Wyllie-Echeverria, S. 2011. The influence of current speed and vegetation density on flow structure in two macrotidal eelgrass canopies. Limnology and Oceanography 1 (2011): 38-55.

Law, C. J., Linck, J., Painter, B., Shultz, D. M., Marino, C. M., and Tibbetts, I. R. 2011. The exogenous and endogenous mechanisms influencing the locomotive activity and burrowing behavior of soldier crab Mictyris longicarpus (Latreille, 1806) on North Stradbroke Island, Queensland, Australia. Saltman Quarterly* 8.

Longley, R. 2011. Neurogenesis in the procerebrum of the snail Helix aspersa: a quantitative analysis. Biol Bull. 221:215-226.

Malyshev, A.Y., Norekian T.P. and Balaban P.M.  Neural control of heartbeat during two antagonistic behaviors: whole body withdrawal and escape swimming in the mollusk Clione limacine.  J. Comp. Physiol. A, 194: 899–906, 2008.

Moroz, L.L. and Norekian, T.P. Organization of a neuromuscular system in ctenophores. J. Comp. Neurol., 2011.

Norekian, T.P. and Moroz, L.L. Neurotransmitter control of the cilia beating in Pleurobrachia. J. Exp. Biology, 2011.

O’Loughlin, P.M., Paulay, G., Davey, N., Michonneau, F. 2011. The Antarctic Region as a marine biodiversity hotspot for echinoderms: diversity and diversification of sea cucumbers. Deep Sea Research II 58: 264-275

Passamaneck, Y.J., Furchheim, N., Hejnol, A., Martindale, M.Q., Lüter, C. (2011) Ciliary
photoreceptors in the cerebral eyes of a protostome larva. EvoDevo. 2:6.

Philippe H, Brinkmann H, Copley RR, Moroz LL, et al (2011) “Acoelomorph flatworms are deuterostomes related to Xenoturbella” Nature: in press

Taylor, A., Stein, J., Jolivette, S. 2011. Big sites, small sites, and coastal settlement patterns in the San Juan Islands, Washington, USA. Journal of Island & Coastal Archaeology. 6:287-313.

Zazay, R., Morrison, J., Redond, R, Murray, J. Structure and function of pedal neurons controlling muscle contractions in Tritonia diomedea. Impulse: The Premier Journal for Undergraduate Publications in the Neurosciences 2012.




2010

Bentlage, B. (2010) Carybdea alata auct.: rediscovery of the Alatina grandis type. Zootaxa: 2713 52-54.

Bentlage, B., Cartwright P, Yanagihara AA, Lewis C, Richards GS, Collins AG (2010) Evolution of box jellyfish (Cnidaria: Cubozoa), a group of highly toxic invertebrates.Proceedings of the Royal Society B:277:493-501 (Cover article)

Bourdeau, P. E. 2010. An inducible morphological defence is a passive by-product of behaviour in a marine snail. Proceedings of the Royal Society of London B 277: 455-462.

Budaeva N., Fauchald, K. Larval development of Mooreonuphis stigmatis (Treadwell
1922) (Polychaeta: Onuphidae) from the north-east Pacific. Marine Biology Research, 6: 6-24.

Byern, J. von, C.E. Mills and P. Flammang, 2010. Bonding tactics in ctenophores –morphology and function of the colloblast system. pp. 29-40 In Biological Adhesive Systems: From Nature to Technical and Medical Application (J. von Byern and I.Grünwald, eds.) Springer Publishing Company, New York, 305 pp.

Cartwright, S. Flores, C.C. Garcia, T.L. Higgins, C. Montanez, A. Rames, K.M. Welch and V. Wyllie-Echeverria. 2010. Distribution and performance of the non-native seagrass Zostera japonica across a tidal height gradient on Shaw Island, WA, USA. Pacific Science 64(2): 187-198 .

Dadda, M., H. W. Koolhaas and P. Domenici 2010. Behavioural asymmetry affects escape performance in a teleost fish. The Journal of Experimental Biology 214, 3102-3110.

Eernisse,  D. J., M. F. Strathmann, and R. R. Strathmann.  2010.  Henricia pumila sp. nov.: A brooding seastar (Asteroidea) from the coastal northeastern Pacific. Zootaxa 2329: 22–36.

George, Sophie B, Carlson, M, Regassa, 2010. L. Shell use by juvenile fiddler crabs of Uca pugnax and U. pugilator. Journal of Experimental Marine Biology and Ecology. 396: 35-41.

Hanson, M.B., R.W. Baird, J.K.B Ford, J. Hemplemann, D. VanDoornik, J. Candy, C.K.
Emmons, G.S. Schorr, B. Gisborne, K.L. Ayres, S.K. Wasser, K.C. Balcomb, K.
Balcomb-Bartok, and M.J. Ford. “Species and stock identification of prey selected by
Endangered ‘southern resident’ killer whales in their summer range” Endang. Species
Res, Vol. 11: 69–82, 2010

Hanson, T., A. Potter, and S. Vernon. 2010. Surveys for the island marble in San Juan County,
Washington, 2009.  WA Department of Fish & Wildlife final report to U.S. Fish & Wildlife Service. 32 pp.

Kocot, K.M., J.T. Cannon, and K.M. Halanych. (2010) Elucidating animal phylogeny: advances in knowledge and forthcoming challenges. In: Key Transitions in Metazoan Evolution. B. Schierwater and R. DeSalle Eds. Science Publishers, Ensfield, NH, USA.

Lambert G., Shenkar, N. and Swalla B.J. (2010) First Pacific record of the north Atlantic ascidian Molgula citrina—bioinvasion or circumpolar distribution? Aquatic Invasions.  5(4): 369-378

Lee HJ, Boulding EG. 2010. Latitudinal clines in body size, but not in thermal tolerance or heat shock cognate 70 gene (HSC70) in the highly-dispersing intertidal gastropod, Littorina keenae (Gastropoda: Littorinidae). Biol J Linn Soc 100: 494-505.

Longley, R. 2010. Comparison of control of pedal sole cilia in the snails Lymnaea stagnalis appressa and Helisoma trivolvis. Biol Bull 219(3).

Maliska, M., Swalla, B.J. 2010. Molgula pugetiensis is a Pacific tailless ascidian within the Roscovita clade of molgulids. Biol Bull 2010 219(3).

McDonald, K. A. and D. Vaughn. (2010) An abrupt change in food environment induces cloning in Dendraster excentricus plutei. The Biological Bulletin. 219:38-49

Naish KA, Boulding EG. 2010. Corrigendum for Trinucleotide microsatellite markers for the Zebra Mussel, Dreissena polymorpha, an invasive species in Europe and North America. Mol Ecol Res 11:223-224.

Ooishi, S. 2010a. Enterocola hessei Chatton & Harant (Copepoda: Cyclopoid: Ascidicolidae) living in the compound ascidian Clavelina lepadiformis (Müller)–––Proceeding of the Biological Society of Washington 123(2):137–148.

Ooishi, S. 2010b. Enterocola brementi Illg & Dudley (Copepoda:Cyclopoida: Ascidicolidae) living in the compound ascidian Aplidum palldium (Verill), compared with E. mammiferus Chatton & Harant). Proceeding of the Biologial Society of Washington123(4):312-323.

Pakes D, Boulding EG. 2010. Changes in the selection differential exerted on a marine snail during the ontogeny of a predatory shore crab. J Evol Biol 23: 1613-1622.

Pernet, B., *A. Deconinck, and L. Haney.  2010.  Molecular and morphological markers for
distinguishing the sympatric intertidal ghost shrimps Neotrypaea californiensis and N. gigas
in the Eastern Pacific.  Journal of Crustacean Biology 30:323-331

Pernet, B., and D. McHugh.  2010.  Evolutionary changes in the timing of gut morphogenesis in larvae of the marine annelid Streblospio benedicti.  Evolution and Development 12:618-627

Pfister, C.A., F. Meyer, and D.A. Antonopoulos. 2010. Metagenomic profiling of a microbial assemblage associated with the California mussel: A node of networks of carbon and nitrogen cycling. PLoS ONE 5(5): e10518. doi:10.1371/journal.pone.0010518.

Pires, A., and E.L. Lewis (2010). Regulation of metamorphosis by mechanosensory Stimulation and catecholamines in a gastropod. Integrative and Comparative Biology 50: suppl 1: e283.

Pirtle, T.J., Willingham, K., and Satterlie, R.A. (2010). A hyperpolarization-activated inward current alters swim frequency of the pteropod mollusk Clione limacina. Comp. Biochem.
Physiol. A Mol. Intger. Physiol. 57: 319-327.

Semmler, H. and Wanninger, A. 2010. Myogenesis in two polyclad platyhelminths with indirect development, Pseudoceros canadensis and Stylostomum sanjuania. Evolution and Development 12 (2):208-219.

Shenkar, N. and Swalla, B.J. (2010) Molecular data confirm synonomy of Roscovite molgulid ascidians. Cahiers de Biologie Marine 51: 85-87.

Sherrard K., F. Robin, E.M. Munro, and P. Lemaire 2010. Sequential activation of apical and basolateral contractility drives ascidian endoderm invagination. Current Biology 20, Issue 17, 14 September 2010, Pages 1499-1510.

Sperling, E.A., J.M. Robinson, D. Pisani, and Peterson, K.J., 2010. Where’s the glass? Biomarkers, microRNAs and molecular clocks suggests a 200 Myr missing Precambrian fossil record of siliceous sponge spicules. Geobiology 8: 24-36.

Svendsen, J., C. Tudorache, A. Jordan, J.F. Steffensen, K. Aarestrup and P. Domenici. Partition of aerobic and anaerobic swimming costs related to gait transitions in a labriform swimmer. Journal of Experimental Biology 213, 2177-2183.

Stricker, S.A., D.J. Carroll, and W.L. Tsui, 2010. Roles of Src family kinase signaling during fertilization and the first cell cycle in the marine protostome worm (Cerebratulus). Int. J. Dev. Biol. 54: 787-793 (2010).

STRICKER, S.A., Escalona, J., Abernathy, S. and A. Marquardt (2010c). "Pharmacological
analyses of protein kinases regulating egg maturation in marine nemertean worms: a
review and comparison with mammalian eggs. Mar. Drugs 8: 2417-2434.

STRICKER, S.A., Swiderek, L., and Nguyen, T. (2010b). "Stimulators of AMP-activated kinase
(AMPK) inhibit seawater- but not cAMP-induced oocyte maturation in a marine worm:
implications for interactions between cAMP and AMPK signaling" Mol. Reprod. Dev 77:
497-510.

Vaughn, D. (2010) Why run and hide when you can divide? Evidence for cloning and reduced size as an adaptive inducible defense. Marine Biology. 157(6):1301-1312

Vaughn, D. and J. D. Allen. (2010) The peril of the plankton. Integrative and Comparative Biology. 50(4):52-70.

Wyllie-Echeverria, S., S. L. Talbot and J. R. Rearick.  2010 Genetic structure and diversity of Zostera marina (eelgrass) in the San Juan Archipelago, Washington, USA. Coasts and Estuaries 33:811-827

 

 

 

 

Bibliography 2010-2019