University of Washington
Friday Harbor Laboratories

Research Apprenticeships
for Undergraduates
and Post-Baccalaureates

Spring and Autumn 2004

Lindsey Behee holds a long nose skate, Raja rhins, aboard the research vessel Nugget.


* Intensive 10-11 week research training experience,
15 undergraduate credits from University of Washington.

* Live and work at Friday Harbor Laboratories (FHL),
world-renowned marine science research facility
on 484-acre biological preserve, San Juan Island, Washington.

* Financial support: $3000 provided to each research apprentice living on the FHL campus
to defray costs for room & board at FHL, and University of Washington tuition.


*Excellent student/faculty ratio: Each team of 5-12 students led by
1-4 faculty mentors plus 1-4 RAs (grad students or post-docs)


APPLICATION DEADLINES:

JANUARY 15 - for Spring Quarter

JULY 1 - for Autumn Quarter

Applications welcome from undergraduates or post-baccalaureates from any institution.
Applicants do not need to be currently enrolled at the University of Washington
or at any other university or college.

Application Procedures

Friday Harbor Labs Homepage

Research by Research Apprentices in Previous Years


Research Apprenticeship Opportunities


SPRING 2004

March 29- June 5

AUTUMN 2004

September 27 - December 11

 

 
 

How to Apply

Frequently Asked Questions

Calendar

Intensive, full-time research training experiences are offered to qualified undergraduates and post-baccalaureates for 10-11 weeks (one full quarter) in Spring and Autumn Quarters. Two to four teams of 5-12 students each work on one focused research problem guided by a group of faculty, postdoctoral and graduate student mentors. Students selected for participation receive financial support ($3000) to defray costs for room and board at FHL and tuition charged by University of Washington.

There will be three options for Spring 2004 and three options for Autumn 2004. Applications are due on January 15th for Spring Quarter teams, and July 1st for Autumn Quarter. Students accepted into the program will register for 15 credits, and should consult with their advisor prior to registration.

Click here for information on how to apply.

 

The Research Apprenticeship Teams at Friday Harbor Laboratories
were awarded the 2002 University of Washington

BROTMAN AWARD FOR INSTRUCTIONAL EXCELLENCE
for outstanding collaborative achievements in teaching and fostering excellent learning.

"This award recognizes a program that gives University of Washington undergraduates a research experience of unique intensity, focus and independence. The Friday Harbor formula - three months at a superb marine biology field station, small research teams, dedicated faculty mentors - changes students' lives and launches careers in research."

 
There have been 235 Research Apprentices at Friday Harbor Laboratories
since the program was launched in the spring of 1999.

In a survey of all past Research Apprentices,
94% rated the value of the program to their career
as "
Excellent" or "Very Good."


COMMENTS FROM RESEARCH APPRENTICES

"These apprenticeship courses are fantastic. They allow the student to actually participate in scientific research and show us the way to learn more than we had thought possible in one quarter."

"I would not trade the experience for anything. It changed how I view science completely."

"I learned how to collaborate with a group and work independently, gained experience in various scientific techniques and wrote my first scientific paper."

"I am so glad I had the opportunity to come here, it is the highlight of my year and something I never could have imagined beforehand. I feel privileged to have studied here."

"I learned about research by doing research . . . the best way!"

"This is an ideal place to study, live and research."

"I was expecting intense research, and it was definitely intense, but it was fun too."

"This was the most learning I have done yet in college. Keep this program!"

"Lots of hands-on experience, research and technology. Small class size and individual attention."

"This was one of the best ... OK ... THE best class I have ever taken. I learned a ton!"

"My experience at Friday Harbor will be something I will never forget. It was excellent ... a wonderful opportunity to have as an undergraduate."

"I learned an incredible amount of information this quarter in the most exciting new way."

"A wonderful and inspirational introduction to research!"

"It was an incredible experience ... It gave me the passion to stick with biology - the real work is not out of a textbook and my time at FHL really made that clear."

"I really can do independent research!"

"The facilities were fantastic as well. It was incredible to be permitted to use such powerful instruments to accomplish our tasks."

"With the small class size I was able to interact with the professors and RAs at a level I've never known before."

"Just an absolutely amazing experience - and fun!"

"These apprenticeship programs truly give students a taste of what research is like ... I am no longer intimidated by what graduate school involves, nor as scared of professors."

"I have learned so much and had a great time doing it."

"Great facilities, nice community, beautiful location, all the equipment!"

"The community at FHL has been a wonderful part of this experience. Living with people who love science and come to science with different backgrounds and perspectives has been wonderful. I have never been involved in a course I have loved so much and in which I have learned so much."

"It was great to have so much personal attention in this small group ... Gained great experience in giving presentions and presenting scientific papers ... I am proud of what I have learned and achieved."


"I consider my experience at FHL to be the most valuable of my academic career."


SPRING 2004
Applications due January 15, 2004

From Neurons to Behavior: Comparative Neurobiology of Marine Invertebrates

Dr. Shaun Cain and Dr. Andrew Christie

Biology 499
F (15 credits)
Spring Quarter, Research Apprenticeship
March 29 - June 5, 2004

The overriding theme of this apprenticeship is to understand how the nervous system functions to control and produce behavior. The students will be exposed to all aspects of neural systems, from sensory to motor and behavioral to molecular. We focus our work on marine invertebrates found in the Puget Sound and surrounding waters. These animals possess relatively simple nervous systems and have proven to be particularly useful in discerning general neural strategies that are common to all types of animals. Some of the questions we will address include: I) how the behavior produced by a “fixed” neural circuit can be modulated by circulating hormones; II) how neural circuits are reorganized during development; and III) how cells are able to detect and use various sensory cues available in the environment, including the Earth’s magnetic field. We will take an integrative approach to addressing these issues, exposing students to many of the anatomical, biochemical, molecular and electrophysiological techniques commonly used in neuroscience.

During the apprenticeship, each student is expected to develop their own research project. To this end, Weeks 1 and 2 of the course will be an introduction to the neurons, nervous systems and behavior of many local invertebrates, as well as basic principles of nervous system function. In addition, apprentices will participate in instructor-led projects that will expose them to the methodology and techniques needed to conduct their individual research. At the end of Week 2, students will submit a research proposal outlining the project they intend to investigate. Students may work individually or in pairs. Potential projects include but are not limited to:

A) Identifying cells in the central nervous system that respond to magnetic field stimuli.
B) Investigating the innervation patterns of ciliated epithelial cells.
C) Localizing putative magnetoreceptive sensory cells.
D) Localizing the neurons innervating crustacean neuroendocrine sites.
E) Identifying the hormones present in crustacean secretory neurons.
F) Determining the modulatory action of peptide hormones on feeding-related and cardiac circuits.
G) Investigating how neural circuits and their transmitters are changed over the course of development.

Weeks 3 through 8 will be dedicated to conducting experiments with weekly student-led lab meetings to discuss progress and problems concerning each apprentices’ project. The final two weeks of the course will be used for data analysis and preparation and presentation of project results. As has been the case in our previous apprenticeships, we expect some of these projects to lead to more extensive investigations and the publication of scientific reports. Enrollment limited to 8 students.

For additional information contact: crabboy@u.washington.edu or crabman@u.washington.edu

Click here for information on how to apply.



Marine Molecular Ecology

Dr. Christiane Biermann, Portland State University
Dr. Tammy McGovern
, University of Washington


Biology 499 G (15 credits)
Spring Quarter, Research Apprenticeship
March 29 - June 5, 2004

In this apprenticeship, we will use DNA markers to understand the ecology, evolution and conservation of marine organisms. During the first two weeks of the apprenticeship, a series of lectures and laboratory exercises will provide the students with a broad overview of the principles, tools and techniques that are commonly employed in the field of molecular ecology. After this introduction, the students develop and pursue research projects of their choosing and participate in the instructors' ongoing, long-term research. In addition to species delineations and life history patterns, questions may include the more applied issues of introduced species, genetic diversity, and connectivity of marine protected areas. Techniques will include DNA isolation, PCR methods, automated DNA sequencing (ABI 377), microsatellite analysis, and the use of anonymous DNA markers. Topics that the 2003 Molecular Ecology Apprenticeship Team pursued include: a) describing a novel mutualism between cryptic polychaete species, b) characterizing chemically defended bacterial symbionts of bryozoans, and c) quantifying levels of gene flow and dispersal among populations of snails, barnacles, urchins, sculpins and rockfish. The interdisciplinary focus means that students with backgrounds in fisheries science, ecology, evolutionary biology, human genetics and biotechnology interact with each other and with other students and scientists at FHL. The accessibility of diverse natural populations and the molecular facilities at FHL, combined with the unique format of a research apprenticeship, allow for an intense learning experience during which students will make new discoveries and experience working in science. Enrollment limited to 8 students.

For additional information contact: biermann@u.washington.edu or tmmcgov@u.washington.edu

Click this link for additional information about last year's Marine Molecular Ecology apprenticeship: http://faculty.washington.edu/biermann/MME2003.html

Click here for information on how to apply.


Marine Fish Ecology

Dr. Don Gunderson and Dr. Art Kendall, University of Washington School of Aquatic and Fishery Sciences

Fish 492 A (15 credits)
Spring Quarter, Research Apprenticeship
March 29 - June 5, 2004

This apprenticeship team will focus on gaining an understanding of how nearshore and Marine Protected Areas function for a variety of fish species with diverse life histories, and will emphasize research to understand the dispersal/retention of marine fish eggs, larvae, juveniles, and adults. This year the class will be split into two teams, one team focusing on egg and larval ecology, and the other team focusing on juvenile and adult ecology. Apprentices may also become actively involved with the San Juan County Marine Resources Committee and engage in evaluating the policy implications of implementing MPA networks and other marine conservation issues. The opportunity for students to learn to do independent field and lab research is the primary teaching objective of this apprenticeship.

Enrollment limited to 16 students. This will be a double team with double the faculty time from the standard apprenticeship team.

Note: Fish 492 will substitute for some degree requirements in the SAFS major and may be used to fulfill SAFS's Capstone Requirement. Please direct enquiries to Lin Murdock <linm@u.washington.edu>
Students in other majors and schools should check with their departmental adviser to assess how the credits may be applied.

For additional information contact: dgun@u.washington.edu

Click here for information on how to apply.


AUTUMN 2004
Applications due July 1, 2004


Pelagic Ecosystem Function in the San Juan Archipelago

Dr. Jan Newton, Washington Department of Ecology and University of Washington
Breck Tyler
, University of California, Santa Cruz


Ocean 499 D (15 credits)
Autumn Quarter, Research Apprenticeship
September 27 - December 11, 2004

The primary research objective of this apprenticeship is to investigate the physical-biological coupling of oceanographic processes and biota in the San Juan Archipelago. This work is timely and important for several reasons:
- San Juan Basin is highly productive, hosting abundant populations of plankton, fishes, seabirds, and marine mammals.
- The Basin is the area along the entire Pacific coast judged to be most highly sensitive to climate change, due to idiosyncrasies of tidal forcing (Helmuth et al 2002).
- The Basin is located at the nexus of the Fraser River and the Pacific Ocean, allowing for comparison of fresh water and marine influences.
- The Basin is in the domain of several major remote ocean observing systems (e.g., VENUS, IOOS) ramping up in the next decade.

In order to understand the functioning of the Basin’s complex ecosystem, it is essential to determine which processes are predominant in shaping the physical environment. These will also determine directly the habitat available for prey and predator species. If these elements can be linked, it will be possible in the future to assess the status of regional biota by means of remote observing systems. The primary educational goals are to have apprentices examine the workings of a marine ecosystem from top to bottom in order to understand how coupling with oceanographic processes leads to spatial and temporal variation in biotic patterning. We will use the natural laboratory of the waters adjacent to San Juan Island to begin to explore the mechanisms responsible for variability in the region. We will focus on two study sites in San Juan Channel, one in the dynamic outer Channel (near Cattle Pass) and the other in the broad inner Channel (northern end). Specifically, apprentices will be asked to:

1) Develop and implement techniques to assess physical and biological oceanographic conditions in the Channel and investigate the relative importance of river versus oceanic forcing by comparison with long-term oceanographic data.
2) Develop and implement techniques to assess distribution and abundance of principal prey species (zooplankton, fish) and attempt to link these with oceanographic patterns and processes.
3) Develop and implement techniques to assess distribution and abundance of marine birds and mammals and investigate how oceanographic properties and processes (such as tidal forcing) affect the feeding habits of these top marine predators (following on the work of Zamon 2000; 2001).

Faculty: We are an interdisciplinary team. Dr. Jan Newton for oceanography (physical and biological) and Dr. Breck Tyler for upper trophic levels (seabirds, marine mammals) will be the lead instructors. Dr. Terrie Klinger (University of Washington, School of Marine Affairs) has agreed to participate on average once per week to contribute knowledge of benthos, larvae, and local processes. We will recruit a graduate student RA from UW School of Aquatic and Fisheries Sciences to cover fish. We also plan to pull in a broad spectrum of guest lecturers, including other oceanographers, zoologists, and local experts. Enrollment limited to 8 students.

For additional information contact: newton@ocean.washington.edu

Click here for information on how to apply.


Seismic Deformation and its Relation to Volcanic, Hydrothermal and Biologic Activity Along the Endeavor Ridge

Dr. William Wilcock
, School of Oceanography, University of Washington
Dr. Douglas Toomey
, Department of Geological Sciences, University of Oregon
Dr. Emilie Hooft, Department of Geological Sciences, University of Oregon
Dr. Andrew Barclay, School of Oceanography, University of Washington

Ocean 499 E (15 credits)
Autumn Quarter, Research Apprenticeship
September 27 - December 11, 2004


This apprenticeship will provide an opportunity to experience the excitement of scientific discovery analyzing data from the first long-term seismic network to be deployed on an oceanic spreading center and an introduction to plate tectonics, earthquake seismology and multidisciplinary research on the seafloor. The experiment that underpins the class is motivated by the ongoing planning for NEPTUNE (http://www.neptune.washington.edu/), an ambitious program that will deploy a fiber optic network on the Juan de Fuca Plate off the coast of the Pacific Northwest. NEPTUNE will host instrumentation to study a wide variety of geological, oceanographic and ecological problems that require long term observations. Inspired by this concept, the W. M. Keck Foundation is supporting the University of Washington and several partners to conduct a prototype NEPTUNE experiment to monitor for several years the linkages between seismic deformation and variations in the intensity, chemistry, and microbiology of fluids venting from the seafloor. A key part of this project is the deployment of a small but sophisticated seismic network on the Endeavour segment of the Juan de Fuca spreading ridge which is located 200 miles off the coast of Vancouver Island. This network was deployed in the summer of 2003 and includes the first fully broadband seismometer to be deployed long-term on a mid-ocean ridge. The first year’s data will be returned in the summer of 2004.

Each apprentice will be responsible for locating and characterizing the earthquakes using state-of-the-art software and will work on a specialized project that may involve, for example, the application of an advanced seismic technique, the integration of the earthquake data with other observations or the development of models of mid-ocean ridge processes. During the quarter, informal lectures and discussions will cover the physical, chemical, and biological character of mid-ocean ridge processes; the tectonics of the Pacific Northwest; the principles of earthquake seismology; and the technological developments that are enabling seafloor observatories. Several days will be spent on the R/V CENTENNIAL working with the remotely operated vehicle (ROV) and remote sensing tools in order to develop an appreciation of the challenges of working beneath the oceans and of mapping multi-scale geological features on the seafloor. There will also be a field trip to either the Metchosin or Fidalgo ophiolite.

The class will be taught by a team of four instructors all of whom are experts in marine seismology and mid-ocean ridge research. In addition, we will be visited by several guest participants who will share their interest in the emerging scientific results from this class and will discuss their work on other aspects of the Keck project, the planning for NEPTUNE, and land-based seismology in the Pacific Northwest.

Enrollment limited to 8 students. For additional information contact: wilcock@u.washington.edu

Click here for information on how to apply.


The Aquatic Gel Phase: Dynamics of Marine Biopolymers

Drs. Pedro Verdugo, Wei-Chun Chin and Ivan Quesada.

Biology 499 g (15 credits)
Autumn Quarter, Research Apprenticeship
September 27 - December 11, 2004


Our discovery that polymers found in seawater can spontaneously assemble forming micron-sized gels (Chin et al Nature 1998) has introduced a new powerful paradigm that will fundamentally change the way oceanographers think about chemical, physical, and biological interactions of organic macromolecules found in seawater. The implications of these new observations range from modulation of metal ion chelation, to marine bacterial dynamics, and to carbon cycling, and global climate change (Wells, Nature 1998).

In this team students will investigate: 1) the cellular mechanisms of polymer release by phytoplankton; 2) the hypothesis that marine microgels provide discrete niches of high marine biopolymer concentration that bacteria can readily colonize and degrade; and 3) the hypothesis that microgels can function as ion exchange resins capable of binding trace metal ions found in seawater. Students will conduct a through review of the literature, and learn the theory and practice of the tools they will apply in their experiments. Using dynamic laser scattering spectroscopy, flow cytometry, and fluorescence microscopy, they will follow the assembly kinetics of marine biopolymers, swelling kinetics of secreted material during phytoplankton exocytosis, and study the kinetics of bacterial colonization of marine microgels. They will formulate mathematical models to formally describe these phenomena and will report their results in a manuscript. Enrollment limited to 8.

For additional information contact: verdugo@u.washington.edu

Click here for information on how to apply.


 

Marine Tech Dr. Craig Staude measures a Spotted Ratfish, Hydolagus colliei. Dr Bruce Miller overlooks.

Tom Kang, a former Research Apprentice, reported:

"Our lives were immersed in science, meal times were filled with discussion about the day's results and new experiments in progress. Students from across the country joined us for brief periods, all with unique and interesting subjects of study.

If you apply yourself, your time at FHL will be filled with a period of intense growth and development as well as advancement of your skills as a scientist. Working in the tight knit community will redefine your understanding of a team concept and open your eyes to the potential that a focused group with a singular goal can have.''


Frequently Asked Questions

What are the Friday Harbor Laboratories?
FHL is a University of Washington campus dedicated to teaching and research in the marine sciences. Located on San Juan Island, Washington (75 miles NW of Seattle) FHL enjoys an international reputation for high quality courses and a research-intensive atmosphere.

Can I commute daily to Friday Harbor from Seattle?
No, students will live and study on the FHL campus at least six days a week. The apprenticeship will be a full-immersion research experience.

What are the accommodations like?
Dormitories have comfortable, double occupancy rooms with bathrooms down the hall. Each dorm room contains single beds, desk space with ample lighting and two chairs. There is plenty of space to store your belongings.

What are the arrangements for food?
Research Apprentices are required to purchase the full-board meal plan while at FHL. The Dining Hall provides numerous options for the diversity of student preferences, including vegetarian and meat dishes, salad bar, and numerous beverage choices.

May I have visitors at FHL?
Yes, if housing is available when requested and reserved prior to visitors' arrival. Huts or cottages may be rented at a reasonable price on a first come, first served basis. (Huts are heated, one room structures without plumbing. Bathrooms are nearby.)

How is the financial support disbursed?
Each apprentice living on the FHL campus receives $3000 in support to help defray their expenses for room & board at FHL, and tuition charged by University of Washington. Expenses for room and board at FHL will typically be deducted first from the $3000, and the remaining amount will be assigned to students' accounts (at the University of Washington) at the beginning of the term to defray tuition charges.

NOTE: Research Apprentices do not need to request financial aid in order to receive the $3000 in support awarded to all Apprentices, but may submit a request for financial aid if additional support is needed.

What are the expenses?

FHL ROOM AND BOARD
--

for AUTUMN 2004 (10 weeks): $1442

UW TUITION -- tuition rates are set by the University of Washington.

AUTUMN 2004:

$1760 estimated tuition for Washington State residents (students not currently or recently enrolled at UW will be charged an additional $36 registration fee);

$2740 estimated tuition for non-residents not matriculated at University of Washington, registering for UW Extension credits (most visiting, non-resident, non-UW students choose this option);

$5970 estimated tuition for non-residents matriculated at University of Washington.


ESTIMATED EXPENSE EXAMPLES for AUTUMN 2004:

Washington state residents: program costs will be $1760 estimated tuition + $1442 room and board = $3202 total. The $3000 in support provided to each FHL Research Apprentice will cover all but approximately $200 of these costs.

Out-of-state residents not matriculated at University of Washington, registering for UW Extension credits: (most visiting students choose this option), program costs will be $2740 estimated tuition + $1442 room and board = $4182 total. Thus for most out-of-state residents not matriculated at UW, the $3000 in support provided by FHL will cover all but approximately $1180 in costs for tuition, room and board at FHL.

Out-of-state residents matriculated at UW: program costs will be $5970 estimated tuition + $1442 room and board = $7412. FHL will provide $3000 in support leaving an estimated balance of $4410.

NOTE: Students who face financial constraints may submit a request for additional financial assistance (only for those seeking assistance in addition to the $3000 awarded to all Research Apprentices). Additional financial aid is awarded on the basis of both financial need and academic merit.

 

How can I learn more?

For additional information, please contact FHL Student Coordinator, Stacy Markman at
fhladmin@u.washington.edu
or (206) 616-0753.

You may also check out the website from a previous apprentice team:
Molecular Evolution of Multigene Families in Marine Invertebrates

or click the following to review articles about the apprenticeship program.


2004 FHL CALENDAR

 

SPRING

SUMMER
Session A

SUMMER
Session B

 AUTUMN

STUDENT
APPLICATIONS DUE*

January 15

March 1

March 1

 July 1

INSTRUCTION
BEGINS

March 29

June 14

July 19

September 27

INSTRUCTION
ENDS

June 5

July 17

August 21

 December 11


*
Applications will be accepted beyond the stated deadline if space available.

HOW TO APPLY: Click here for application information

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