Answer key, practice problems 2000--week 11

1. (a)

Since the alleles are at Hardy-Weinberg frequencies, the frequency of the recessive phenotype = 0.16 = q2 (where q = frequency of allele t). Therefore:

q = frequency of t = 0.4
frequency of T = 1 - 0.4 = 0.6
(b)

The arithmetic solution to this problem is shown left panel), along with a more general algebraic solution (right panel).

Thus, one generation of restricted mating gives a frequency of T = 5/7 and t = 2/7.

(c) The frequency of T after n generations is:

Tn = T0e-µn

where T0 = initial frequency of T = 0.8
e = base of natural log
µ = mutation rate
n = # of generations = 10000

Therefore, after 10000 generations,

frequency of T = 0.8e-0.02

= 0.784

and the frequency of t = 1 - 0.784 = 0.216

(d) Since the rate of loss of t is 1/2N (where N is the size of the population), in order for mutation to counteract this loss rate, we need the mutation rate to be at least this rate--

Plugging in the mutation rate, we get N is at least 500,000.

2. (a) Allele d will be more frequent, as the forward mutation (D to d) occurs at a higher rate than the back mutation.
(b)

Let the frequency of D = p, and the frequency of d = q, forward mutation rate = u, and back mutation rate = v

Then the change in p would include loss from forward mutation and gain from back mutation; likewise, change in q would include gain from forward mutation and loss from back mutation:

Change in p = vq - up
Change in q = up - vq
(c)

At equilibrium, change in p is exactly matched by change in q, so the change in p = 0 (as is the change in q)--

vq - up = 0;
vq = up
Since q = 1 - p, we can substitute and solve for p--
v(1 - p) = up
v - vp = up
up + vp = v
p = v/(u + v)

Therefore, at equilibrium, p = 0.00001/0.00005 = 0.2

q = 1-0.2 = 0.8

3. (a)
Use the frequencies of the various genotype classes--
0.82 x 0.82 = 0.41
(b)

    2(0.8)(0.2) x 0.22 = 0.0128

(c)

    2(0.8)(0.2) x 2(0.8)(0.2) = 0.1024

4. (a)

Frequency of baldness allele = q = 0.3

Frequency of wildtype allele = p = 1-0.3 = 0.7

bb = q2 = 0.32 = 0.09

Bb = 2pq = 2 x 0.3 x 0.7 = 0.42

BB = p2 = 0.72 = 0.49 (where b = baldness allele, B = normal)

(b)

Males

Bald = Bb and bb = 2pq + q2 = 0.42 + 0.09 = 0.51

Non-bald = BB = p2 = 0.49

Females

Bald = bb = q2 = 0.09

Not-bald = BB and Bb = p2 + 2pq = 0.49 + 0.42 = 0.91

(c)

Number of B alleles after immigration = (0.7 x 9000) + (0.1 x 1000) = (6300 + 100) = 6400.

(Actually, since there are 2 alleles per individual, we'd have to double these values -- but the factor of 2 will cancel out in the next step, so we can just ignore that here.)

New value of p = frequency of B in the expanded population = 6400/10000 = 0.64

New value of q = 1-0.64 = 0.36.

Frequency of heterozygotes in the next generation = 2pq = 2 x 0.64 x 0.36 =0.4608

5.

The easy way is to realize that no matter what the father’s genotype, the probability of a heterozygous child is 1/2; therefore, the probability that the child will be a heterozygous carrier is 1/2. If the normal allele is D and the recessive disease allele is d, the mother is Dd and the father could be DD or Dd or dd

If the father is... Expected progeny genotypes are... Probability of Dd child is...
DD 1 DD : 1 Dd 1/2
Dd 1 DD : 2 Dd : 1 dd 1/2
dd 1 Dd : 1 dd 1/2

Thus, regardless of the father’s genotype, the child has a 1/2 chance of being Dd.

[The roundabout way, which just makes a lot of extra work that eventually mostly cancels out, is to figure out the relative frequencies of the various genotypes, calculate the probabilities of the various types of mates that Charlene could have, and therefore the probability of heterozygous offspring. It works out to the same thing in the end.]

6. (a) Frequency of the wild type allele = p = (660 + (280/2))/1000 = 0.8

Frequency of PKU allele = q = 0.2

(b) Assuming Hardy-Weinberg conditions, the expected numbers of the various genotypes are:

Genotype Expected number of individuals
AA = 1000 x p2 = 1000 x 0.64 = 640
Aa = 1000 x 2pq = 1000 x 2 x 0.8 x 0.2 = 320
aa = 1000 x q2 = 1000 x 0.04 = 40

(c) Testing whether the observed numbers match the predictions made in (b):

Genotype Expected Observed (O-E)2/E
AA 640 660 0.625
Aa 320 280 5.0
aa 40 60 10.0
Chi-sq. value = 15.625

For chi-square = 15.625 and df = 1, the P value = 0.0000772265 (this value was obtained from an on-line chi-square calculator). Since this value is well below the usual cut-off value of P= 0.05, we can reject the null hypothesis -- i.e., there is strong statistical evidence that the population does not fit the standard Hardy-Weinberg model.

This is an instance where there appear to be 3 categories -- but all we really need to know is one value (either p or q) and therefore, df = 1 and not 2.

7. (a) Assuming that phenotypes of TT and Tt are the same --

Ptt = q2 = 1% = 0.01.

pt = q = square-root of 0.01 = 0.1

pT = p = (1 - 0.1) = 0.9

Therefore, PTT = p2 = (0.9 x 0.9) = 0.81

and PTt = 2pq = (2 x 0.9 x 0.1) = 0.18

(b) Since the various genotypes are not equally fit (Tt has a fitness of 0.5), the population is not in standard Hardy-Weinberg conditions.
(c) The predicted (assuming equal fitness) and actual frequencies (with wTt = 0.5) of progeny of the various genotypes are shown:

Genotype Predicted for HWE Actual
TT = PTT' = 0.81 = PTT' x wTT = 0.81 x 1.0 = 0.81
Tt = PTt' = 0.18 = PTt' x wTt = 0.18 x 0.5 = 0.09
tt = Ptt' = 0.01 = Ptt' x wtt = 0.01 x 1.0 = 0.01

Therefore, the frequency of allele T in the next generation is:

q' = 1 - p' = (1 - 0.94) = 0.06.

8. For the sake of simplicity, I shall designate the allele frequencies as:

p(Si) = a

p(Sy) = b

p(Sg) = c

The distribution of genotypes then is:

(a+b+c)2 = a2 + 2ab + 2ac + b2 + 2bc + c2 = 1
               icky          yucky  gross

(Remember that Icky is dominant over everything else, so any animal with allele Si will show the Icky phenotype; etc.)

The frequencies of icky and yucky slugs are compound terms and cannot be calculated directly. However, the frequency of gross slugs = 0.2; c2 = 0.2, therefore c = 0.45

But b2 + 2bc = 0.3 (= phenotype frequency of yucky slugs)

Substituting for the value of c in this equation, we get

b2 + 0.9b - 0.3 = 0

Solving for b, we get b = 0.26.

a = 1 - (b + c) = 0.29.

p(Si) = 0.29

p(Sy) = 0.26

p(Sg) = 0.45

9. (a)

The trend will be as follows: in every generation, the males will show the same allele frequency that the females showed in the previous generation; and the allele frequency in females will be the average of the frequencies in the male and female in the previous generation.

Thus, in generation 0, p(0f) = 0.9 and p(0m) = 0.1;

In generation 1, p(1f) will be 0.5, and p(1m) will be 0.9

-- note that the D allele frequency in females (0.5) is the mean of 0.9 and 0.1, which were the D allele frequency values in the previous generation, while males show the allele frequency that females showed in the previous generation (0.9)

p(2f) will be 0.7 and p(2m) will be 0.5
p(3f) will be 0.6 and p(3m) will be 0.7
p(4f) will be 0.65 and p(4m) will be 0.6, etc.

These allele frequencies were calculated for each generation the usual way--it is demonstrated for the first generation here:

gametes 0.1D 0.9d Y
0.9D 0.09DD 0.81Dd 0.9DY
0.1d 0.01Dd 0.09dd 0.1dY
female progeny male progeny

p(1f) = 0.09 + (0.82/2) = 0.5

etc.

(b)

Eventually, the frequency of allele D will be the same in males as in females, stabilizing at p = ~0.63 as shown in the graph: