Bonsai Documentation Index

General Description

Glossary

Tutorial

Task Help

Opening Window

Multiple Alignment Window

Tree Graph Window

Dot Matrix Window

Text Alignment Window

Pair Alignment Settings

Multiple Alignment Settings

Kyte-Doolittle Window

Simulator Window

Alignment Editing

Distance Corrector

Pair Alignment Bootstrap Test

Understanding Trees

Understanding Multiple Alignments

Understanding Score Matrices

Position-Specific Score Matrix View

Reference List

Trouble Shooting


Known Bugs

Inside Bonsai (for the programmer)