Bonsai Documentation Index
General Description
Glossary
Tutorial
Task Help
Opening Window
Multiple Alignment Window
Tree Graph Window
Dot Matrix Window
Text Alignment Window
Pair Alignment Settings
Multiple Alignment Settings
Kyte-Doolittle Window
Simulator Window
Alignment Editing
Distance Corrector
Pair Alignment Bootstrap Test
Understanding Trees
Understanding Multiple Alignments
Understanding Score Matrices
Position-Specific Score Matrix View
Reference List
Trouble Shooting
Known Bugs
Inside Bonsai (for the programmer)