Plant Ecophysiology and Modeling Lab

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2016 ~

Jeong JH, Resop JP, Mueller ND, Fleisher DH, Yun K, Butler EE, Timlin DJ, Shim K-M, Gerber JS, Reddy VR, Kim S-H (2016) Random forests for global and regional crop yield predictions. PLoS ONE 11(6), e0156571.

Khan Z, Rho H, Hung SH, Firrincieli A, Luna M, Masciarelli O, Kim S-H, Doty SL (2016) Increased drought tolerance of hybrid poplar by inoculation with endophyte consortia: Biomass gains, reduced water loss and oxidative damage protection. Current Plant Biology (in press)

Kinmonth-Schultz HA, Tong X, Lee J, Song YH, Ito S, Kim S-H, Imaizumi T (2016) Cool night-time temperatures induce the expression of CONSTANS and FLOWERING LOCUS T to regulate flowering in Arabidopsis. New Phytologist 211, 208-224.

Timlin D, David O, Green TR, Fleisher D, Kim S-H, Ahuja L (2016) Standards for documentation of computer code published by the ASA-CSSA-SSSA society publications. Agronomy Journal 108(5), 1-5.

Nackley LL, Jeong JH, Oki LR, Kim S-H (2016) Photosynthetic acclimation, biomass allocation, and water use efficiency of garlic in response to carbon dioxide enrichment and nitrogen fertilization. Journal of the American Society for Horticultural Science 141(4), 373-380.

Spencer B, Lawler JJ, Lowe C, Thompson L, Hinckley T, Kim S-H, Bolton S, Meschke S, Olden JD, Voss JG (2016) Case studies in co-benefits approaches to climate change mitigation and adaptation. Journal of Environmental Planning and Management, (in press).

Doty SL, Sher AW, Fleck ND, Khorasani M, Bumgarner RB, Khan Z, Ko AWK, Kim S-H, DeLuca TH (2016) Variable nitrogen fixation in wild Populus. PLoS ONE 11(5), e0155979.

2011 ~ 2015

Nackley LL, Kim S-H (2015) A salt on the bioenergy and biological invasions debate: salinity tolerance of the invasive biomass feedstock Arundo donax. GCB Bioenergy 7, 752-762.

Kandel SL, Herschberger N, Kim S-H, Doty SL (2015) Diazotrophic endophytes of poplar and willow for growth promotion of rice plants in nitrogen-limited conditions. Crop Science 55(4), 1765-1772.

Khan Z, Kandel SL, Ramos DN, Ettl GJ, Kim S-H, Doty SL (2015) Increased biomass of nursery-grown douglas-fir seedlings upon inoculation with diazotrophic endophytic consortia. Forests 6(10), 3582-3593.

Makowski D, Asseng S, Ewert F et al. (2015) A statistical analysis of three ensembles of crop model responses to temperature and CO2 concentration. Agricultural and Forest Meteorology 214–215, 483-493.

Yun K, Kim S-H (2014) An improved method for phenology model parameterization using sequential optimization. Korean Journal of Agricultural and Forest Meteorology 16(4), 304-308.

Kumudini S, Andrade FH, Boote KJ, Brown GA, Dzotsi KA, Edmeades GO, Gocken T, Goodwin M, Halter AL, Hammer GL, Hatfield JL, Jones JW, Kemanian AR, Kim S-H, Kiniry J, Lizaso JI, Nendel C, Nielsen RL, Parent B, Stöckle CO, Tardieu F, Thomison PR, Timlin DJ, Vyn TJ, Wallach D, Yang HS, Tollenaar M (2014) Predicting maize phenology: Intercomparison of functions for developmental response to temperature. Agronomy Journal 106(6), 2087-2097.

Hough-Snee N, Nackley LL, Kim S-H, Ewing K (2014) Does plant performance under stress explain divergent life history strategies? The effects of flooding and nutrient stress on two wetland sedges. Aquatic Botany 120, 151-159.

Nackley LL, Vogt KA, Kim S-H (2014) Arundo donax water use and photosynthetic responses to drought and elevated CO2. Agricultural Water Management 136, 13-22

Bassu S et al. (2014) How do various maize crop models vary in their responses to climate change factors? Global Change Biology (in press)

Knoth JL, Kim S-H, Ettl GJ, Doty SL (2014) Biological nitrogen fixation and biomass accumulation within poplar clones as a result of inoculations with diazotrophic endophyte consortia. New Phytologist 201, 599-609.

Glenn DM, Kim S-H, Ramirez-Villegas J, Läderach P (2013) Response of perennial horticultural crops to climate change. Horticultural Reviews, 41, 47-130.

Kim S-H, Jeong JH, Nackley LL (2013) Photosynthetic and transpiration responses to light, CO2, temperature, and leaf senescence in garlic: Analysis and modeling. Journal of the American Society for Horticultural Science 138, 149-156.

Lawler JJ, Spencer B, Olden JD, Kim S-H, Lowe C, Bolton S, Beamon BM, Thompson L, Voss JG (2013) Mitigation and Adaptation. In: Climate Vulnerability Vol. 5 (eds R. Pielke Sr., K.Suding, & T. Seastedt). Elsevier, Oxford, UK, p315-335.

Knoth JL, Kim S-H, Ettl GJ, Doty SL (2013) Effects of cross host species inoculation of nitrogen fixing endophytes on growth and leaf physiology of maize. GCB Bionergy, 5, 408-418.

Zheng G, Moskal LM, Kim S-H (2013) Retrieval of effective leaf area index in heterogeneous forests with a terrestrial laser scanner. IEEE Transactions on Geoscience and Remote Sensing, 51, 777-786.

Zwart DC, Kim S-H (2012) Biochar amendment increases resistance to stem-lesions caused by Phytophthora spp. in tree seedlings. HortScience, 47:1736-1740

Kim S-H, Yang Y, Timlin D, Fleisher D, Dathe A, Reddy VR, Staver K (2012) Modeling temperature responses of leaf growth, development, and biomass in maize with MAIZSIM. Agronomy Journal 104(6): 1523-1537.

Kim S-H, Cregg B (2012) Emerging methods for diagnostics and mitigation of crop environmental stress in a changing climate. HortScience 47(6), 684-686.

Yang Y., Timlin D.J., Fleisher D.H., Lokhande S.B., Chun J.A., Kim S.-H., Staver K. & Reddy V.R. (2012) Nitrogen concentration and dry matter accumulation in maize crop: assessing maize nitrogen status with an allometric function and a chlorophyll meter. Communications in Soil Science and Plant Analysis 43(11), 1563-1575.

Chung U., Mack L., Yun J.I. & Kim S.-H. (2011) Predicting the timing of cherry blossoms in Washington D. C. and Mid-Atlantic States in response to climate change. PLoS ONE 6(11), e27439

Kinmonth-Schultz, H. & Kim S.-H. (2011) Carbon gain, allocation, and storage in rhizomes in response to elevated CO2 and nutrient supply in a perennial C3 species, Phalaris arundinacea. Functional Plant Biology 38, 797-807

Sicher R.C. & Kim S.-H. (2011) Photosynthesis, growth and maize yields in the context of global change. In: Advances in Maize (eds J.-L. Prioul, C. Thevenot, & T. Molnar), pp. 373-391. Society of Experimental Biology, London, UK.


Fleisher D., Timlin D., Reddy K.R., Reddy V.R., Yang Y., & Kim S.-H. (2010) Effects of carbon dioxide and temperature on crops: Lessons from SPAR growth chambers. In: Hillel D, Rosenzweig C eds. p55-84. Handbook of Climate Change and Agroecosystems: Impacts, Adaptation, and Mitigation. London, UK, Imperial College Press.

Bae H., Sicher R.C., Kim M.S., Kim S.-H., Strem M.D., Melnick R.L. & Bailey B.A. (2009) The beneficial endophyte, Trichoderma hamatum isolate DIS 219b, promotes growth and delays the onset of the drought response in Theobroma cacao. Journal of Experimental Botany, 60, 3279-3295.

Richardson J.J., Moskal L.M. & Kim S.-H.(2009) Modeling approaches to estimate effective leaf area index from aerial discrete-return LIDAR. Agricultural and Forest Meteorology, 149, 1152-1160.

Yang, Y., Kim, S.-H., Timlin, D.J., Fleisher, D.H., Quebedauax, B. & Reddy, V.R. (2009) Simulating canopy evapotranspiration and photosynthesis of corn plants under different water status using a coupled model. Transactions of the ASABE, 52, 1011-1024.

Yang Y., Timlin D.J., Fleisher D.H., Kim S.-H., Quebedeaux B. & Reddy V.R. (2009) Simulating leaf area of corn plants at contrasting water status. Agricultural and Forest Meteorology, 149, 1161-1167.

Timlin D., Yang Y., Kim S.-H., Bunce J., Anaplli S., Fleisher D., Quebedeaux B. & Reddy V.R. (2008) Simulation of the effects of limited water on photosynthesis and transpiration in field crops: Can we advance our modeling approaches? In: Response of crops to limited water: Understanding and modeling water stress effects on plant growth processes (ed L.R. Ahuja), pp. 105-143. ASA Special Publication, Madison, WI.

Bae H., Kim S.-H., Kim M.S., Sicher R.C., Lary D., Strem M.D., Natarajan S. & Bailey B.A. (2008) The drought response of Theobroma cacao (cacao) and the regulation of genes involved in polyamine biosynthesis by drought and other stresses. Plant Physiology and Biochemistry, 46, 174-188.

Timlin D., Kouznetsov M., Fleisher D., Kim S.-H. & Reddy V.R. (2008) Simulation of nitrogen demand and uptake in potato using a carbon-assimilation approach. In: Quantifying and understanding plant nitrogen uptake for systems modeling (eds L. Ma, L.R. Ahuja, & T. Bruulsema), pp. 219-243. CRC Press, Boca Raton, FL.

Kim S.-H., Gitz D.C., Sicher R.C., Baker J.T., Timlin D.J. & Reddy V.R. (2007) Temperature dependence of growth, development, and photosynthesis in maize under elevated CO2. Environmental and Experimental Botany, 61, 224-236.

Kim S.-H., Fisher P.R. & Lieth J.H. (2007) Analysis and modeling of gas exchange processes in Scaevola aemula. Scientia Horticulturae, 114, 170-176.

Timlin D., Fleisher D., Kim S.-H., Reddy V. & Baker J. (2007) Evapotranspiration measurement in controlled environment chambers: A comparison between time domain reflectometry and accumulation of condensate from cooling coils. Agronomy Journal, 99, 166-173.

Kim S.-H., Sicher R.C., Bae H., Gitz D.C., Baker J.T., Timlin D.J. & Reddy V.R. (2006) Canopy photosynthesis, evapotranspiration, leaf nitrogen, and transcription profiles of maize in response to CO2 enrichment. Global Change Biology, 12, 588-600.

Fleisher D.H., Shillito R.M., Timlin D.J., Kim S.-H. & Reddy V.R. (2006) Approaches to modeling potato leaf appearance rate. Agronomy Journal, 98, 522-528.


~ 2005

Baker J.T., Kim S.-H., Gitz D.C., Timlin D.J. & Reddy V.R. (2005) Photosynthesis and yield of southern U.S.A. rice cultivars in response to CO2 and temperature. Journal of Agricultural Meteorology (Tokyo), 60, 457-462.

Kim S.-H., Reddy V.R., Baker J.T., Gitz D.C. & Timlin D.J. (2004) Quantification of photosynthetically active radiation inside sunlit growth chambers. Agricultural and Forest Meteorology, 126, 117-127.

Kim S.-H., Shackel K.A. & Lieth J.H. (2004) Bending alters water balance and reduces photosynthesis of rose shoots. Journal of the American Society for Horticultural Science, 129, 896-901.

Kim S.-H. & Lieth J.H. (2004) Effect of shoot-bending on productivity and economic value estimation of cut-flower roses grown in Coir and UC Mix. Scientia Horticulturae, 99, 331-343.

Baker J.T., Kim S.-H., Gitz D.C., Timlin D. & Reddy V.R. (2004) A method for estimating carbon dioxide leakage rates in controlled-environment chambers using nitrous oxide. Environmental and Experimental Botany, 51, 103-110.

Kim S.-H. & Lieth J.H. (2003) A coupled model of photosynthesis, stomatal conductance and transpiration for a rose leaf (Rosa hybrida L.). Annals of Botany, 91, 771-781.

Johnson E.L., Kim S.-H. & Emche S.D. (2003) Storage effects on genomic DNA in rolled and mature coca leaves. BioTechniques, 35, 310-316.

Kim S.-H. & Lieth. J.H. (2002) Modeling photosynthesis of heterogeneous rose crop canopies in the greenhouse. Acta Horticulturae, 593, 121-128.