2008

Eddy, Johanna and Maizels, Nancy

(2008) Conserved elements with potential to form polymorphic G-quadruplex structures in the first intron of human genes. Nucleic Acids Research, doi: 10.1093/nar/gkm1138

2007

Rodriguez MA,* Vermaak D,* Bayes JJ,* Malik HS

(2007) Species-specific positive selection of the male-specific lethal complex that participates in dosage compensation in Drosophila. Proc Natl Acad Sci U S A 104: 15412-7. (*joint first authors)

Daniella Bianchi-Frias , Colin Pritchard , Brigham H Mecham , Ilsa M Coleman and Peter S Nelson.

Genetic background influences murine prostate gene expression: implications for cancer phenotypes. Genome Biology 2007; 8:R117 doi:10.1186/gb-2007-8-6-r117

Ronald S.Y. Cheung, John T. Brooling, Melissa Johnson, Kimberly J. Riehle, Jean S. Campell and Nelson Fausto

(2007) Interactions between MYC and transforming growth factor alpha alter the growth and tumorigenicity of liver progenitor cells Carcinogenesis Advance Access published online August 14th 2007

Hilary Clay, J. Muse Davis, Dana Beery, Anna Huttenlocher, Susan E. Lyons, and Lalita Ramakrishnan.

Dichotomous Role of the Macrophage in Early Mycobacterium marinum Infection of the Zebrafish. Cell Host & Microbe 2, 29-39, July 2007.

Hawkins VN, Joshi H, Rungsihirunrat K, Na-Bangchang K, Sibley CH

(2007) Antifolates can have a role in the treatment of Plasmodium vivax. Trends Parasitol 23(5):213-22.

Rungsihirunrat K, NaBangchang K, Hawkins VN, Mungthin M, Sibley CH

(2007). Sensitivity to antifolates and genetic analysis of Plasmodium vivax isolates from Thailand. Am J Trop Med Hyg 76(6):1057-65.

Rachel A. Howard-Till and Meng-Chao Yao.

Tudor Nuclease Genes and Programmed DNA Rearrangements in Tetrahymena thermophila. Eukaryotic Cell, October 2007 6: 1795-1804.

Laura A. Buttitta, Alexia J. Katzaroff, Carissa L. Perez, Aida de la Cruz, and Bruce A. Edgar.

A Double-Assurance Mechanism Controls Cell Cycle Exit upon Terminal Differentiation in Drosophila. Developmental Cell, April 2007 12:631-643.

Lewis M.D., Miller S.A., Miazgowicz M.M., Beima K.M., Weinmann A.S.

2007. T-bet's ability to regulate individual target genes requires the conserved T-box domain to recruit histone methyltransferase activity and a separate family member specific transactivation domain. Mol. Cell. Biol. Epub Oct 8. In Press.

David N. Baldwin, Benjamin Shepherd, Petra Kraemer, Michael K. Hall, Laura K. Sycuro, Delia M. Pinto-Santini, and Nina R. Salama. (2007)

Identification of Helicobacter pylori Genes That Contribute to Stomach Colonization. Infect. Immun. 75:1005-1016.

M.D. Miner, G.C. Port, and N.E. Freitag.

Regulation of Listeria monocytogenes virulence genes. In Listeria monocytogenes: Pathogenesis and Host Response, 1st ed. H. Goldfine and H. Shen, editors. Springer, New York, N.Y., p. 139-158, 2007.

G.C. Port and N.E. Freitag.

Identification of novel Listeria monocytogenes secreted virulence factors following mutational activation of the central virulence regulator PrfA. Infection and Immunity, 75 (12): 5886-97, Dec 2007.

Julia E. Dooher, Bobbie L. Schneider, Jonathan C. Reed, and Jaisri R. Lingappa.

Host ABCE1 is at Plasma Membrane HIV Assembly Sites and its Dissociation from Gag is Linked to Subsequent Events of Virus Production. Traffic, 2007 Mar;8(3):195-211.

Bardia Askari, Jenny E. Kanter, Ashley M. Sherrid, Deidre L. Golej, Andrew T. Bender, Joey Liu, Willa A. Hsueh, Joseph A. Beavo, Rosalind A. Coleman, and Karin E. Bornfeldt.

Rosiglitazone Inhibits Acyl-CoA Synthetase Activity and Fatty Acid Partitioning to Diacylglycerol and Triacylglycerol via a Peroxisome Proliferator–Activated Receptor- –Independent Mechanism in Human Arterial Smooth Muscle Cells and Macrophages. Diabetes 2007 56: 1143-1152.

Vigdorovich V, Miller AD, Strong RK (Apr 2007)

Ability of hyaluronidase 2 to degrade extracellular hyaluronan is not required for its function as a receptor for jaagsiekte sheep retrovirus, Journal of Virology, 81(7)3124-3129

Webb A.E., Sanderford, J., Frank, D., Talbot, W.S., Driever, W. and Kimelman, D.

Laminin 5 is essential for fin development in the zebrafish. Dev Bio. 2007 Nov., 311(2) 369-82.

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2006

Harper, EG, Alvares, SM, Carter, WG.

Wounding activates p38 map kinase and activation transcription factor 3 in leading keratinocytes. J Cell Sci. 2005 Aug 1;118(Pt 15):3471-85.

Bickel, KS and Morris, D.R. (2006).

Silencing the transcriptome’s dark matter: mechanisms for suppressing translation of intergenic transcripts. Mol Cell, 22, 309-316.

Blackstone, E, and Roth, M.B., 2006.

Suspended Animation-like State in Mice Protects against Lethal Hypoxia. in review.

Malik, HS and Bayes, J.J.

Genetic conflicts during meiosis and the evolutionary origins of centromere complexity. Biochem Soc Trans. 2006 Aug: 34 (Pt 4): 569-83.

Brown, H. L., Cherbas, L., Cherbas, P. and Truman, J. W.

(2006). Use of time-lapse imaging and dominant negative receptors to dissect the steroid receptor control of neuronal remodeling in Drosophila. Development 133, 275-85.

Cervantes, Marcella D., Robert S. Coyne, Xiaohui Xi, and Meng-Chao Yao

The Condensin Complex Is Essential for Amitotic Segregation of Bulk Chromosomes, but Not Nucleoli, in the Ciliate Tetrahymena thermophila. Mol. Cell. Biol., Jun 2006; 26: 4690 - 4700.

Eddy, J. and Maizels, N.

Gene function correlates with potential for G4 DNA formation in the human genome. Nucleic Acids Research. 2006, Vol. 34, No. 14 3887-3896

Fluegel, Megan L., Tracey J. Parker, and Leo J. Pallanck.

Mutations of a Drosophila NPC1 Gene Confer Sterol and Ecdysone Metabolic Defects. Genetics 2006 172: 185-196. doi:10.1534/genetics.105.046565

Hatch, NE, Hudson M, Seto ML, Cunningham MC, Bothwell M.

Intracellular retention, degradation and signaling of glycosylation deficient FGFR2 and craniosynostosis syndrome associated FGFR2C278F. J Biol Chem. 2006 Jul 14; [Epub ahead of print].

Hatton, BA, Knoepfler PS, Kenney AM, Rowitch, DH de Alborán IM, Olson JM and Eisenman RN

N-myc is an Essential Downstream Effector of Shh Signaling During both Normal and Neoplastic Cerebellar Growth. Cancer research 2006; 66 (17): 1-7.

Beryl A. Hatton, Paul S. Knoepfler, Anna Marie Kenney, David H. Rowitch, Ignacio Moreno de Alboran, James M. Olson, and Robert N. Eisenman.

Cancer Res 2006; 66(17): 8655-61

Hatton, BA, Pritchard JI and Olson JM.

Nervous system cancer models: Medulloblastoma. Drug Discovery Today: Disease Models 2006; volume and page numbers currently unavailable.

Beryl A. Hatton, Joel I. Pritchard, James M. Olson.

Nervous system cancer models: Medulloblastoma. Drug Discovery Today:Disease Models 2006; 3(2) 167-74.

Judge, LM, Haraguchi M, Chamberlain JS.

Dissecting the signaling and mechanical functions of the dystrophin-glycoprotein complex. J Cell Sci. 2006 Apr 15;119 (Pt 8):1537-46.

Kaiser, Shari M and Michael Emerman.

Uracil DNA, glycosylase is dispensable for human immunodeficiency virus type 1 replication and does not contribute to the antiviral effects of the cytidine deaminase Apobec3G. J Virol. 2006 Jan;80(2):875-82.

Caren Norden^1,3 Manuel Mendoza^1,3 Jeroen Dobbelaere^1,4 Chitra V. Kotwaliwale² Sue Biggins^2s and Yves Barral^1*.

The NoCut Pathway Links Completion of Cytokinesis to Spindle Midzone Function to Prevent Chromosome Breakage. Cell 125, 85-98, April 7, 2006©2006 Elsevier Inc.
1 Institute of Biochemistry, Biology Departm,ent, ETH Zurich, 8093 Zurich, Switzerland
2 Division of Basic Sciences, Fred Hutchinson Cancer Research Center, Seattle, WA 98109, USA
3 These authors contributed equally to this work
4 Present address: The Wellcome Trust/Cancer Research UK Guron Institute, Department of Genetics, Cambridge CB2 1QN, England, United Kingdom
*Contact: yves.barral@bc.biol.ethz.ch
DOI 10.1016/j.cell.2006.01.045

Heather H. Cheng^1,3 Maria M. Anderson³ F. Clair Hankenson^2,3 Lily Johnston³ Chitra V. Kotwaliwale^1,3* and Julie Overbaugh^3*.

Envelope Determinants for Dual-Receptor Specificity in Feline Leukemia Virus Subgroup A and T Variants. Journal of Virology, Feb. 2006, p.1619-1628. ©2006 American Society for Microbiology.
Program in Molecular and Cellular Biology¹ and Department of Microbiology² University of Washington and Division of Human Biology, Fred Hutchinson Cancer Research Center³ Seattle, Washington.

Lien, Wen-Hui, Olga Klezovitch, Tania E. Fernandez, Jeff Delrow, and Valeri Vasioukhin (2006)

αE-Catenin controls cerebral cortical size by regulating the hedgehog signaling pathway. Science 311: 1609-1612.

Lien, Wen-Hui, Olga Klezovitch, and Valeri Vasioukhin.

Cadherin-catenin proteins in vertebrate development. Curr Opin Cell Biol. 2006 Oct;18(5):499-506.

Sebastian A. Mikolajczak, Vanessa Jacobs-Lorena, Drew C. MacKellar, Nelly Camargo, Stefan H.I. Kappe.

L-FABP is a critical host factor for successful malaria liver stage development. International Journal for Parasitology 2007 April: 37(5):483-489.

Maurer, M., and Cooper, J.A. (2006).

The adaptor protein Dab2 sorts LDL receptors into coated pits independently of AP-2 and ARH. J. Cell Sci., 119:4235-4246.

Sarah K. Wootton, Michael J. Metzger, Kelly L. Hudkins, Charles E. Alpers, Denis York, James C. DeMartini and A. Dusty Miller.

Lung cancer induced in mice by the envelope protein of jaagsiekte sheep retrovirus (JSRV) closely resembles lung cancer in sheep infected with JSRV. Retrovirology. 2006, 3:94.

Murray SM, Picker LJ, Axthelm MK, Linial ML.

Expanded tissue targets for foamy virus replication with simian immunodeficiency virus-induced immunosuppression. Journal of Virology 2006 Jan;80(2):663-70.

Murray SM and Linial ML.

Foamy virus infection in primates. Review. Journal of Medical Primatology, Special AIDS Edition 2006 Aug; 35 (4-5), 225-35.

Molly OhAinle, Julie A. Kerns, Harmit S. Malik, and Michael Emerman. (2006)

Adaptive Evolution and Antiviral Activity of the Conserved Mammalian Cytidine Deaminase APOBEC3H. J. Virol. 80: 3853-3862.

Molly OhAinle, Julie A. Kerns, Harmit S. Malik, and Michael Emerman.

(2006) Adaptive Evolution and Antiviral Activity of the Conserved Mammalian Cytidine Deaminase APOBEC3H. J. Virol. 80: 3853-3862.

Powers, R.W., 3rd, Kaeberlein, M., Caldwell, S.D., Kennedy, B.K., and Fields, S.2006.

Extension of chronological life span in yeast by decreased TOR pathway signaling. Genes Dev 20(2): 174-184.

Miriam I. Rosenberg, Sara A. Georges, Amy Asawachaicharn, Erwin Analau, and Stephen J. Tapscott.

MyoD inhibits Fstl1 and Utrn expression by inducing transcription of miR-206. The Journal of Cell Biology, Vol. 175, No. 1, October 9, 2006 77-85.

Sampietro, James, Caroline L. Dahlberg, Uhn Soo Cho, Thomas R. Hinds, David Kimelman, and Wenqing Xu.

(Short Article)Crystal Structure of a β-Catenin/BCL9/Tcf4 Complex. Copyright © 2006 Cell Press. All rights reserved. Molecular Cell, Vol 24, 293-300, 20 October 2006.

*Coller HA, *Sang L, Roberts JM (2006)

A new description of cellular quiescence. PloS Biol 4(3): e83. *Both authors contributed equally to this work.

Shimogawa, M.M., Graczyk, B., Gardner, M.K., Francis, S.E., White, E.A., Ess, M., Molk, J.N., Ruse, C., Niessen, S., Yates J.R., III, Muler, E. G., Bloom, K. Odde D.J., Davis, T.N. (2006)

Mps1 phosphorylation of Dam1 coupels kinetochores to microtubule plus ends at metaphase. Curr Biol 16:1489-501.

Speelmon, EC, Livingston-Rosanoff D, Li SS, et al.

“Genetic association of the retroviral restriction factor TRIM5α with HIV-1 infection.” Manuscript in press (Mar 2006), J Virol.

Thomas, PS, Jr, Fraley GS, Damian V, Woodke LB, Zapata F, Sopher BL, Plymate SR, La Spada AR.

Loss of endogenous androgen receptor protein accelerates motor neuron degeneration and accentuates androgen insensitivity in a mouse model of X-linked spinal and bulbar muscular atrophy. Hum Mol Genet. 2006 Jul 15; 15(14):2225-38.

Laura E. Swaim, Lynn E. Connolly, Hannah E. Volkman, Olivier Humbert, Donald E. Born, and Lalita Ramakrishnan.

Mycobacterium marinum Infection of Adult Zebrafish Causes Caseating Granulomatous Tuberculosis and is Mordeated by Adaptive Immunity. Infection and Immunity, Nov. 2006, p. 6108-6117.

Xia, Q, Wang T, Park Y, Lamont R and Hackett M.

Differentialquantitative proteomics of Porphyromonas gingivalis by linear ion trap mass spectrometry: non-label methods, q-values and LOWESS curve fitting. International Journal of Mass Spectrometry, in press.

Xia, Q, Hendrickson EL, Zhang Y, Wang T, Taub F, Moore BC, Porat I, Whitman WB, Hackett M, Leigh JA.

Quantitative proteomics of the archaeon Methanoccus maripaludis validated by microarray analysis and real time PCR. Mol Cell Proteomics, 2006 May, 5.5, 868-881.

Li Q, Xia Q, Want T, Meila M, Hackett M.

Analysis of the stochastic variation in LTQ singlescan mass spectra. Rapid Commun Mass Spectrom, 2006 Apr, 20, 1551-1557.

Porat I, Kim W, Hendrickson EL, Xia Q, Zhang Y, Wang T, Taub F, Moore BC, Anderson IJ, Hackett M, Leigh JA, Whitman WB.

Disruption of the operon encoding Ehb hydrogenase limits anabolic CO2 assimilation in the archaeon Methanoccus maripaludis. J Bacteriol. 2006 Feb;188, 1373-1380.

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2005

Law, G.L.*, Bickel, K.S.*, MacKay, V.L. *, and Morris, D.R. (2005).

The under-translated transcriptome reveals widespread translational silencing by alternative 5’ transcript leaders. Genome Biol. 6, R111. *Equal contribution

Blackstone E, Morrison M, Roth MB.

H2S induces a suspended animation-like state in mice. Science. 2005 Apr 22;308(5721):518.

Heather L.D. Brown¹, Lucy Cherbas², Peter Cherbas² and James W. Truman¹.

Use of time-lapse imaging and dominant negative receptors to dissect the steroid receptor control of neuronal remodeling in Drosophila. Development 133, 275-285 doi:10.131/dev.02191. October 2005.
1 Department of Biology, University of Washington, Seattle WA 98195
2 Department of Biology and Center for Genomics and bioinformatics, Indiana University, Bloomington, IN 47405

Marcella D Cervantes, et al.

The CNA1 Histone of the Ciliate Tetrahymena thermophila Is Essential for Chromosome Segregation in the Germline Micronucleus. Mol Biol Cell. 2006 Jan;17(1):485-97. Epub 2005 Oct 26.

Clay H, Ramakrishnan L.

Multiplex fluorescent In Situ Hybridization in Zebrafish Embryos Using Tyramide Signal Amplification. Zebrafish Aug , 2005, Vol.2, No. 2:105-111

Collins, KA, Castillo, A, Tatsutani SY, Biggins, S. 2005.

De novo kinetochore assembly requires the centromeric histone H3 variant. Molecular Biology of the Cell, 16:1549-5660.

Susan L. Fink and Brad T. Cookson.

Apoptosis, Pyroptosis, and Necrosis: Mechanistic Description of Dead and Dying Eukaryotic Cells. Infect Immun, 2005. 73(4): 1907-1916.

Grant, K.A., Raible, D.W, Piotrowski, T.

Regulation of latent sensory hair cell precursors by glia in the zebrafish lateral line. Neuron 45(1): 69-80. 2005.

Hatch NE, Nociti F, Swanson E, Bothwell M, Somerman M.

FGF2 alters expression of the pyrophosphate/phosphate regulating proteins, PC-1, ANK and TNAP, in the calvarial osteoblastic cell line, MC3T3E1(C4). Connect Tissue Res. 2005; 46(4-5): 184-192.

Hoch, R. V. and Soriano, P. (2005-6).

Context-specific requirements for Fgfr1 signaling through Frs2 and Frs3 during mouse development. Development (in press).

Judge LM, Chamberlain JS.

Gene therapy for Duchenne muscular dystrophy: AAV leads the way. Acta Myol. 2005 Dec;24(3):184-93

Aaron Korkegian^1,2, Margaret E. Black⁴, David Baker³, Barry L. Stoddard^1,*.

Computational Thermostabilization of an Enzyme. Science, Vol 308, Issue 5723, 857-860 , 6 May 2005

Lanciault C, Champoux J.

Effects of Unpaired Nucleotides within HIV-1 Genomic Secondary Structures on Pausing and Strand Transfer. Journal of Biological Chemistry, Vol. 280, No. 4, Issue of January 28, pp. 2413-2423, 2005.

Michael H. Chung, James N. Kiarie, Barbra A. Richardson, Dara A. Lehman, Julie Overbaugh and Grace C. John-Stewart.

Breast milk HIV-1 suppression and decreased transmission: a randomized trial comparing HIVNET 012 nevirapine versus short-course zidovudine. AIDS 2005, 19:1415-1422.

Hodgson JG, Malek T, Bornstein S, Hariono S, Ginzinger DG, Muller WJ, Gray JW.

Copy number aberrations in mouse breast tumors reveal loci and genes important in tumorigenic receptor tyrosine kinase signaling. Cancer Res. 2005 Nov 1;65(21):9695-704

Maurer, M.E., and Cooper, J.A.

Endocytosis of Megalin in visceral endoderm cells requires the Dab2 adaptor protein. J Cell Sci, in press.

Yoshiko Mito, Jorja G Henikoff & Steven Henikoff.

Genome-scale profiling of histone H3.3 replacement patterns. Nature Genetics 37:1090-7, 2005.

Fishburn J, Mohibullah N, Hahn S. (2005)

Function of a eukaryotic transcription activator during the transcription cycle. Mol. Cell 18(3):369-78.

Zhang S., Lou Y., Amstein TM., Anyango M., Mohibullah N., Osoti A., Stancliffe D., King R., Iraqi F., Gershenfeld HK. (2005)

Fine Mapping of a major locus on chromosome 10 for exploratory and fear-like behavior in mice. Mamm Genome 16(5):306-18.

Jason N Pitt & Adrian R Ferre-D´Amare.

How RNA closes a Diel. Nature Structural & Molecular Biology, Vol. 12, Number 3, March 2005.

Kaeberlein, M., Powers, R.W., 3rd, Steffen, K.K., Westman, E.A., Hu, D., Dang, N., Kerr, E.O., Kirkland, K.T., Fields, S., and Kennedy, B.K. 2005.

Regulation of yeast replicative life span by TOR and Sch9 in response to nutrients. Science 310: 1193-1196

Powers, R.W., 3rd, Kaeberlein, M., Cauldwell, S.D., Kennedy, B.K., and Fields, S.

2005. Extension of Chronological Life Span in Yeast by Decreased TOR Pathway Signaling. Genes and Development (in press).

Eric E. Smith, Elizabeth H. Sims, David H. Spencer, Rajinder Kaul, and Maynard V. Olson.

Evidence for diversifying selection at the pyoverdine locus of Pseudomonas aeruginosa. Journal of Bacteriology. 2005 Mar;187(6):2138-47.

Hladik F, Liu H, Speelmon E, et al.

Combined effect of CCR5-Delta32 heterozygosity and the CCR5 promoter polymorphism -2459 A/G on CCR5 expression and resistance to human immunodeficiency virus type 1 transmission. J Virol. 2005 Sep; 79:11677-84

Park, F.D., Tenlen, J.R., and Priess, J.R.

C elegans MOM-5/Frizzled functions in MOM-2/Wnt-independent cell polarity and is localized asymmetrically prior to cell division. Current Biol 14, 2252-2258. (2005).

1 Division of Basic Sciences, Fred Hutchinson Cancer Research Center (FHCRC), 1100 Fairview Avenue North, Seattle, WA 98109, USA.
2 Graduate Program in Molecular and Cellular Biology, University of Washington, Seattle, WA 98195, USA.
3 Department of Biochemistry and Howard Hughes Medical Institute, University of Washington, Seattle, WA 98195, USA.
4 Department of Pharmaceutical Sciences, College of Pharmacy, Washington State University, Pullman, WA 99164-6534, USA.
* http://www.sciencemag.org/cgi/content/full/308/5723/857#COR1#COR1

Vigdorovich V, Strong RK, Miller AD.

Expression and Characterization of a Soluble, Active Form of the Jaagsiekte Sheep Retrovirus Receptor, Hyal2, Journal of Virology, 79(1)79-86

Sgaier, S.K., Millet, S., Villanueva, M.P., Berenshteyn, F., Song, C., and Joyner, A.L.

Morphogenetic and cellular movements that shape the mouse cerebellum; insights from genetic fate mapping. Neuron 45:27-40. (2005).

Pyati, U.J., Webb, A.E., and Kimelman, D.

Transgenic Zebrafish Reveal Stage-Specific Roles for Bmp Signaling in Ventral and Posterior Mesoderm Development. Development 2005.

Pyati U.J., Webb A.E., Kimelman D.

Transgenic zebrafish reveal stage-specific roles for Bmp signaling in ventral and posterior mesoderm development. Development. 2005 May;132(10):2333-43.

Webb, A.E. and Kimelman D.

Analysis of early epidermal development in zebrafish. Methods Mol Biol. 2005;289:137-46.

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2004

Cheung, R.S., Odell, M., Campbell, J.S., Fausto, N. (2004)

Assessing the contribution of MYC apoptotic function to liver oval cell tumorigenesis. 95th Annual Meeting of the American Association for Cancer Research.

Klezovitch, O.*, Chevillet, J.^*, Mirosevich, J., Roberts, R.L., Matusik, R.J., and Vasioukhin, V.

Hepsin promotes prostate cancer progression and metastasis. Cancer Cell 6, 185-195. (2004)
*These authors contributed equally to this work

Collins, KA, Furuyama, S, Biggins, S.

Proteolysis contributes to the exlusive localization of the yeast Cse4/CENP-A histone H3 variant. Current Biology, 14:1967-1972. (2004)

Eastberg, J., Pelletier, J., and Stoddard, B. L.

Recognition of DNA substrates by T4 bacteriophage polynucleotide kinase Nucleic Acids Research 32 (2): 653 - 660. (2004)

Hatch N, Seto M, Bothwell M (2004).

Incomplete Gycosylation of Crouzon Mutant FGFR2 Diminishes Protein Stability and Alters Subcellular Localization and Signaling. Pblshd Abstract & Poster Presentation. 26th Ann. Mtg. ASBMR, Seattle, WA.

Hatch N, Nociti C, Swanson E, Bothwell M and Somerman M (2004).

FGF2 Alters Expression of the Pyrophosphate/Phosphate Regulating Proteins, PC-1, ANK and TNAP, in Calfarial Osteoblasts. Pblshd Abs. and Oral Presentation. 82nd Gen. Session, IADR, Honolulu.

Hernandez RE, Rikhof HA, Bachmann R, Moens CB.

vhnf1 integrates global RA patterning and local FGF signals to direct posterior hindbrain development in zebrafish. Development. 2004 Sep;131(18):4511-20.

Shari M. Kaiser and Michael Emerman.

Controlling lentiviruses: single amino acid changes can determine specificity. Proc Natl Acad Sci U S A. 2004 Mar 16;101(11):3725-6.

P. Clint Spiegel, Shari M. Kaiser, Julian A. Simon and Barry L. Stoddard.

Disruption of protein-membrane binding and identification of small-molecule inhibitors of coagulation factor VIII. Chem Bio. 2004 Oct;11(2):1413-22.

Lanciault C, Champoux J.

Single Unpaired Nucleotides Facilitate HIV-1 Reverse Transcriptase Displacement Synthesis through Duplex RNA. Journal of Biological Chemistry, Vol 279, no. 31, Issue of July 30, pp. 32252-32261, 2004.

Jessica L. Lewis¹, Jennifer Bonner², Melinda Modrell³, Jared W. Ragland1, Randall T. Moon ^1,4,5, Richard I. Dorsky² and David W. Raible ^1,3,5,‡.

Reiterated Wnt signaling during zebrafish neural crest development. Development 131, 1299-1308

1Molecular and Cellular Biology Program, University of Washington School of Medicine, Seattle, WA 98195, USA
2Department of Neurobiology and Anatomy, University of Utah, Salt Lake City, UT 84132, USA
3Department of Biological Structure, University of Washington School of Medicine, Seattle, WA 98195, USA
4Howard Hughes Medical Institute and Department of Pharmacology, University of Washington School of Medicine, Seattle, WA 98195, USA
5Center for Developmental Biology, University of Washington School of Medicine, Seattle, WA 98195, USA
‡Author for correspondence (e-mail: draible@u.washington.edu)

Parker, H.G., Kim, L.V., Sutter, N.B., Carlson, S., Lorentzon, T.D., Malek, T.B., Johnson, G.S., DeFrance, H.B., Ostrander, E.A., Kruglyak, L.

Genetic Structure of the Purebred Domestic Dog. Science, 304: 1160-1164.

Wang, C.L., Hodgson, G., Malek, T., Pedersen, F.S., Wabl, M.

A Murine Leukemia Virus with Cre-LoxP Excisible Coding Sequences Allowing Superinfection, Transgene Delivery, and Generation of Host Genomic Deletions. Retrovirology 1: 5-15.

Waggoner DW, Johnson LB, Mann PC, Morris V, Guastella J, Bajjalieh SM.

MuLK, a eukaryotic multi-substrate lipid kinase. J Biol Chem. 2004 Sep 10;279(37):38228-35.

Bennett H. Penn, Donald A. Bergstrom, F. Jeffrey Dilworth, Eyal Bengal, and Stephen J. Tapscott. A

MyoD-generated feed-forward circuit temporally patterns gene expression during skeletal muscle differentiation. Genes & Dev., Oct 2004; 18: 2348 - 2353 ; doi:10.1101/gad.1234304

Julia E. Dooher, Mario Javier Pineda, Julie Overbaugh, Jaisri R. Lingappa.

Characterization of virus infectivity and cel-free capsid assembly of SIVMneCL8. J Med Primatol 2004; 33:262-271. © Blackwell Munksgaard, 2004.

Christina J Ramirez, Melissa A Fleming, John D Potter, Gary K Ostrander and Elaine Ostrander.

Marsupial BRCA1: concerved regios in mammals and the potential effect of missense changes. Oncogene (2004) 23, 1780-1788.

Park, F.D., Tenlen, J.R., and Priess, J. R.

C. elegans MOM-5/Frizzled functions in MOM-2/Wnt-independent cell polarity and is localized asymmetrically prior to cell division. Current Biol 14, 2252-2258. (2004).

Ramirez, C.J., M.A. Fleming, G.K. Ostrander, J.D. Potter, E.A. Ostrander.

Marsupial BRCA1: conserved regions in mammals and the potential effect of missense changes. Oncogene (2004) 23, 1780-1788. © 2004 Nature Publishing Group.

Schaefer JB, Breeden LL.

RB from a bud's eye view. Cell. 2004 Jun 25;117(7):849-50. PMID: 15210104

Drivdahl R, Haugk KH, Sprenger CC, Nelson PS, Tennant MK, Plymate SR.

Suppression of growth and tumorigenicity in the prostate tumor cell line M12 by overexpression of the transcription factor SOX9. Oncogene. 2004;23(26):4584-93.

Bryce L. Sopher, Patrick S. Thomas, Jr., Michelle A. LaFevre-Bernt, Ida E. Holm, Scott A. Wilke, Carol B. Ware, Lee-Way Jin, Randell T. Libby, Lisa M. Ellerby, and Albert R. La Spada.

Androgen Receptor YAC Transgenic Mice Recapitulate SBMA Motor Neuronopathy and Implicate VEGF164 in the Motor Neuron Degeneration. Neuron, Vol. 41, 667-699, March 4, 2004.

Duquett ML, Handa P, Vincent JA, Taylor AF, Maizels N.

Intracellular transcription of G-rich DNAs induces formation of G-loops, novel structures containing G4 DNA. Genes Dev. 2004 Jul 1;18(13):1618-29.

Volkman HE, Clay H, Beery D, Chang JCW, Sherman DR, et al

Tuberculous granuloma formation is enhanced by a Mycobacterium virulence determinant. PloS Biol 2(11): e367 (2004).

Volkman HE*, Clay H*, Beery D*, Chang JC, Sherman DR, Ramakrishnan L.

Tuberculous granuloma formation is enhanced by a mycobacterium virulence determinant. PloS Biol. 2004 Nov;2(11):e367. Epub 2004 Oct 26 (*Joint first authors)

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2003

James F. Carey, Sharon J. Schultz, Lisa Sisson, Thomas G. Fazzio and James J. Champoux.

DNA relaxation by human topoisomerase I occurs in the closed clamp conformation of the protein. PNAS (2003). 100(10): 5640-45

Cooper, K.L., Leisenring, W.M. and Moens, C.B.

Autonomous and nonautonomous functions for Hox/Pbx in branchiomotor neuron development. Developmental Biology 253 (2003) 200-213

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An age-induced switch to a hyper-recombinational state. Science 301(5641):1908-11 (2003)

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The amino-terminal region of Gli3 antagonizes the Shh response and acts in dorsoventral fate specification in the developing spinal cord. Dev Biol 257, 343-55

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New genetic strategies for protein discovery based on whole genome sequences. Proteomics IV. (2003)

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