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Student publications
2009
- Harold N. Frazier III1 and Mark Roth2.
- Adaptive Sugar Provisioning Controls Survival of C. elegans Embryos in Adverse Environments, Current Biologoy
(2009), doi:10.1016/j.cub.2009.03.066.
1Molecular and Cellular Biology Graduate Program, University of Washington,
Seattle, WA 98195 USA 2Basic Science Division, Fred Hutchinson Cancer Research Center, Seattle, WA 98109 USA
- Sutphin GL, Kennedy BK.
- Aging – Evolutionary Theory meets Genomic Approaches. In: Evolutionary biology, concept, Modeling,
and Application. Pontarotti P, ed. Springer 2009 October (pending publication).
- Sutphin GL, Kaeberlein M.
- Measuring Caenorhabditis elegans Life Span on Solid Media. Journal of Visualized Experiments. 2009 (pending
publication).
- Mehta R, Steinkraus KA, Sutphin GL, Ramos FJ, Shamieh LS, Huh A, Davis C, Cahndler-Brown
D, Kaeberlein M.
- Proteasomal Regulation of the Hypoxic Response Modulates Aging in C. elegans. Science, 2009 April 16 (Published
online ahead of print.)
- Young JE, Martinez RA, and La Spada AR.
- Nutrient deprivation induces neuronal autophagy and implicates reduced insulin signaling in neuroprotective
autophagy activation. J Biol Chem. 2009 Jan 23; 284(4): 2263-73.
- Young JE, Garden GA, Martinez R, Tanaka F, Sandoval CM, Smith AC, Sopher BL, Lin
A, Fischbeck KH, Ellerby LM, Morrison RS, and La Spada AR.
- Polyglutamine-expanded androgen receptor truncation fragments activate a Bax-dependent apoptotic cascade
mediated by JNK, c-Jun, and DP5/HRK. J Neurosci. 2009. Feb 19; 29(7): 1987-97.
- Young JE and La Spada AR.
- Development of selective nutrient deprivation as a system to study autophagy induction and regulation in
neurons. Autophagy 2009. May 16; 5(4): 555-57.
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2008
- Alvares SM, Dunn CA, Brown TA, Wayner EE, Carter WG.
- The role of membrane microdomains in transmembrane signaling through the epithelial glycoprotein Gp140/CDCP1.
Biochem Biophys Acta. 2008 Jan 26; [Epub ahead of print]
- Bayes JJ and Malik HS. (April 2008)
- The evolution of centromeric DNA sequences. In: ENCYCLOPEDIA OF LIFE SCIENCES. John Wiley & Sons, Ltd.:
Chichester http://www.els.net [DOI:10.1002/90780470015902.a0020827]
- Talbert PB, Bayes JJ, and Henikoff S.
- (2008) Evolution of Centromeres and Kinetochores: ATwo-Part Fugue, In “The Kinetochore: from Molecular Discoveries
to Cancer Therapy”, Eds. De Wulf P., and Earnshaw W.C. Springer Publ. New York.
- Bayes JJ and Malik HS
- (2008) The evolution of centromeric DNA sequences, In: ENCYCLOPEDIA OF LIFE SCIENCES, John Wiley & Sons,
Ltd: Chichester http://www.els.net (DOI:10.1002/9780470015902.a0020827)
- Budi, Erine H. Larissa B. Patterson and David M. Parichy.
- Embryonic requirements for ErbB signaling in neural crest development and adult pigment pattern formation.
Development 135, 2603-2614 (2008)
- Johanna Eddy and Nancy Maizels.
- Conserved elements with potential to form polymorphic G-quadruplex structures in the first intron of human
genes. Nucleic Acids Research, 2008, Vol. 36, No. 4 1321-1333.
- Vivian N Hawkins, Alyson Auliff, Surendra Kumar Prajapati, Kanchana Rungsihirunrat,
Hapuarachchige C Hapuarachchi, Amanda Maestre, Michael T O’Neil, Qin Cheng, Hema Joshi, Kesara Na-Bangchang
and Carol Hopkins Sibley.
- Multiple origins of resistance-conferring mutations in Plasmodium vivax dihydrofolate reductase. Malaria
Journal 2008, 7:72.
- Olivier Humbert1,2 and Nina Salama1
- The Helicobacter
pylori HpyAXii restriction-modification system limits exogenous DNA uptake by targerting GTAC sties but shows asymmetric conservation of the DNA methyltransferase and restriction endonuclease components. Nucleic Acids Research, 2008, Vol. 36, No. 21 6893-6906 doi:10.1093/nar/gkn718.
1Division of Human Biology, Fred Hutchinson Cancer Research Center and 2Program in Molecular and Cellular Biology, University of Washington, Seattle, WA, USA
- Minhui Lee1,2 and Valeri Vasioukhin1,3*.
- Cell polarity and cancer – cell and tissue polarity as a non-canonical tumor suppressor. Journal of
Cell Science 121, 1141-1150. (2008).
1 Division of Human biology, Fred Hutchinson Cancer Research Center, 1100 Fairview
Ave. N., C3-168, Seattle, WA 98109, USA
2 Molecular and Cellular Biology Program, University of Washington, Seattle, WA 98109, USA
3 Department of Pathology and Institute for Stem Cell and Regenerative Medicine, University of Washington,
Seattle, WA 98195, USA
- Wen-Hui Lien, Olga Klezovitch, Manda Null and Valeri Vasioukhin
- Alpha-E-catenin is not a significant regulator of beta-catenin signaling in the developing mammalian brain.
J. Cell Sci., Vol. 121, 1357-1362, 2008
- Ma, EY, Rubel EW, Raible DW. (2008)
- Notch signaling regulates the extent of hair cell regeneration in the zebrafish lateral line. J Neurosci.
38(9): 2261-2273.
- Sara A. Miller, Albert C. Huang, Michael M. Miazgowicz, Margaret M. Brassil, and
Amy S. Weinmann
- "Coordinated but physically separable interaction with H3K27-demethylase and H3K4-methyltransferase
activities are required for T-box protein-mediated activation of developmental gene expression" Genes
and Development 2008 22:2980-2993
- Morris, VA, Punjabi AS, and Lagunoff M (2008)
- Activation of Akt through gp130 receptor signaling is required for KSHV induced lymphatic reprogramming
of endothelial cells. Journal of Virology, in revision.
- Indika Rajapakse, Lindsey Muir, and Paul Martin.
- Hardy’s “Small Discovery Remembered.” (2008) Notices of the AMS, Volume 55, Number 3.
- Joel D. Nelson,1 Steve Flanagin,2 Yasunobu Kawata,2 Oleg
Denisenko,2 and Karol Bomsztyk.1,2
- Transcription of Iaminin γ1 chain gene in rat mesangial cells: constitutive and inducible RNA polymerase
II recruitment and chromatin states. Am J Physiol Renal Physiol 294: F525-F333, 2008.
1 Molecular and Cellular Biology Program and
2 Department of Medicine, University of Washington Medicine Lake Union, Seattle Washington
- Rasmussen JP, English K, Tenlen JR, Priess JR.
- Notch signaling and morphogenesis of single-cell tubes in the C. elegans digestive tract. Dev Cell. 2008
Apr: 14(4):559-69.
- Leah S. Ronald, Olga Yakovenko, Nina Yazvenko, Sujay Chattopadhyay, Pavel Aprikian,
Wendy E. Thomas and Evgeni V. Sokurenko.
- Adaptive mutations in the signal peptide of the type 1 fimbrial adhesion of uropathogenic Escherichia coli.
PNAS August 5, 2008 vol. 105 no. 31 10937-10942
- Kellie V. Rosinski, Nobuharu Fujii, Jeffrey K. Mito, Kevin K., W. Koo, Suzanne
M. Xuereb, Olga Sala-Torra, James S. Gibbs, Jerald P. Radich, Yoshiki Akatsuka, Benoît J. Van den Eynde
, Stanley R. Riddell and Edus H. Warren
- DDX3Y encodes a class I MHC-restricted H-Y antigen that is expressed in leukemic stem cells. Blood. 2008;
111:4817-4826.
- Brian R. Schultz and Jeffrey S. Chamberlain.
- Recombinant Adeno-associated Virus Transduction and Integration. Molecular Therapy 16: 1189-99 (2008).
Smith EN, Kruglyak L. “Gene-environment interaction in yeast gene expression.” PLoS Biol. 2008
Apr 15;6(4):e83.
- Zhu J, Zhang B, Smith EN, Drees B, Brem R, Kruglyak L, Bumgarner R, Schadt EE.
- “Integrating Large-Scale Functional Genomic Data to Dissect the Complexity of Yeast Regulatory Networks.” In
press Nature Genetics
- Wan-Lin Su1, Barmak Modrek2, Debraj GuhaThakurta2,
Stephen Edwards2, Jyoti K Shah2, Amit V Kulkarni2, Archie Russell2,
Eric E Schadt2, Jason M Johnson2 and John C Castle2*.
- Exon and junction microarrays detect widespread mouse strain-and sex-bias expression differences. BMC Genomics
2008, 9:273.
1 Molecular and Cellular Biology Program, University of Washington, Seattle, WA 98195,
USA and
2 Rosetta Inpharmatics LLC, a wholly owned subsidiary of Merck & Co., Inc., 401 Terry Ave N, Seattle,
WA 98109, USA
*Corresponding author
- Steinkraus KA, Smith ED, Davis C, Carr D, Pendergrass WR, Sutphin GL, Kennedy
BK, Kaeberlein M.
- Dietary restriction suppresses proteotoxicity and enhances longevity by an hsf-1-dependenet mechanism in
Caenorhabditis elegans. Aging Cell 7(3):394-404, 2008 June.
- Sutphin GL, Kaeberlein M.
- Dietary restriction by bacterial deprivation increases life span in wild-derived nematodes. Experimental
Gerontology 43(3):130-5. 2008 March.
- Richard C. Stevens, Stephanie M. Suzuki, Toby B. Cole, Sarah S. Park, Rebecca
J. Richter, and Clement E. Furlong.*
- Engineered recombinant human paraoxonase 1 (rHuPON1) purified from Escherichia coli protects against organophosphate
poisoning. PNAS September 2, 2008 vol. 105 no. 35 12780-12784
- Nathaniel L. Tulloch, Lil Pabon and Charles E. Murrry.
- Get with the (Re) Program: Cardiovascular Potential of Skin-derived Induced Pluripotent Stem Cells. Circulation
2008;118;472-475.
- Jack A Vincent, Tracey J Kwong, Toshio Tsukiyama
- ATP-dependent chromatin remodeling shapes the DNA replication landscape. Nat Struct Mol Biol. 2008 May;15(5):477-84
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2007
- Rodriguez MA,* Vermaak D,* Bayes JJ,* Malik HS
- (2007) Species-specific positive selection of the male-specific lethal complex that participates in dosage
compensation in Drosophila. Proc Natl Acad Sci U S A 104: 15412-7. (*joint first authors)
- Daniella Bianchi-Frias , Colin Pritchard , Brigham H Mecham , Ilsa M Coleman and
Peter S Nelson.
- Genetic background influences murine prostate gene expression: implications for cancer phenotypes. Genome
Biology 2007; 8:R117 doi:10.1186/gb-2007-8-6-r117
- Ronald S.Y. Cheung, John T. Brooling, Melissa Johnson, Kimberly J. Riehle, Jean
S. Campell and Nelson Fausto
- (2007) Interactions between MYC and transforming growth factor alpha alter the growth and tumorigenicity
of liver progenitor cells Carcinogenesis Advance Access published online August 14th 2007
- Hilary Clay, J. Muse Davis, Dana Beery, Anna Huttenlocher, Susan E. Lyons, and
Lalita Ramakrishnan.
- Dichotomous Role of the Macrophage in Early Mycobacterium marinum Infection of the Zebrafish. Cell Host & Microbe
2, 29-39, July 2007.
- Hawkins VN, Joshi H, Rungsihirunrat K, Na-Bangchang K, Sibley CH
- (2007) Antifolates can have a role in the treatment of Plasmodium vivax. Trends Parasitol 23(5):213-22.
- Rungsihirunrat K, NaBangchang K, Hawkins VN, Mungthin M, Sibley CH
- (2007). Sensitivity to antifolates and genetic analysis of Plasmodium vivax isolates from Thailand. Am J
Trop Med Hyg 76(6):1057-65.
- Rachel A. Howard-Till and Meng-Chao Yao.
- Tudor Nuclease Genes and Programmed DNA Rearrangements in Tetrahymena thermophila. Eukaryotic Cell, October
2007 6: 1795-1804.
- Laura A. Buttitta, Alexia J. Katzaroff, Carissa L. Perez, Aida de la Cruz, and Bruce A.
Edgar.
- A Double-Assurance Mechanism Controls Cell Cycle Exit upon Terminal Differentiation in Drosophila. Developmental
Cell, April 2007 12:631-643.
- Christine McBeth1, Audrey Seamons2,5, Juan C. Pizarro1,
Sarel J. Fleishman3, David Baker3, Tanja Kortemme4, Joan M. Goverman2 and
Roland K. Strong1*.
- A New Twist in TCR Diversity Revealed by a Forbidden αβ TCR. J. Mol. Biol. (2008) 375, 1306-1319.
1 Division of Basic Sciences, Fred Hutchinson Cancer Research Center, Seattle, WA
98109, USA
2 Department of Immunology, University of Washington, Seattle, WA 98195, USA
3 Department of Biochemistry, University of Washington, Seattle, WA 98195, USA
4 Department of Biopharmaceutical Sciences, University of California, San Francisco, CA 94143, USA
5 Department of comparative Medicine, University of Washington, Seattle, WA 98195 USA
- Lewis M.D., Miller S.A., Miazgowicz M.M., Beima K.M., Weinmann A.S.
- 2007. T-bet's ability to regulate individual target genes requires the conserved T-box domain to recruit
histone methyltransferase activity and a separate family member specific transactivation domain. Mol. Cell.
Biol. Epub Oct 8. In Press.
- Steve Flanagin1, Joel D. Nelson2, David G. Castner3,
Oleg Denisenko1 and Karol Bomsztyk.
- 1,2 Microplate-based chromatin immunoprecipitation method, Matrix ChIP: a platform to study signaling of
complex genomic events. Nucleic Acids Research, 2008, 1-9 doi:10.1093/nar/gkn001.
1 UW Medicine Lake Union, Department of Medicine, University of Washington, Seattle,
WA 98109
2 Molecular and Cellular Biology Program, University of Washington, Seattle, WA 98109
3 National ESCA and Surface Analysis Center for biomedical Problems, Departments of Bioenginering and Chemical
Engineering, University of Washington, Seattle WA 98195, USA.
- David N. Baldwin, Benjamin Shepherd, Petra Kraemer, Michael K. Hall, Laura K. Sycuro, Delia M. Pinto-Santini,
and Nina R. Salama. (2007)
- Identification of Helicobacter pylori Genes That Contribute to Stomach Colonization. Infect. Immun. 75:1005-1016.
- M.D. Miner, G.C. Port, and N.E. Freitag.
- Regulation of Listeria monocytogenes virulence genes. In Listeria monocytogenes: Pathogenesis and Host
Response, 1st ed. H. Goldfine and H. Shen, editors. Springer, New York, N.Y., p. 139-158, 2007.
- G.C. Port and N.E. Freitag.
- Identification of novel Listeria monocytogenes secreted virulence factors following mutational activation
of the central virulence regulator PrfA. Infection and Immunity, 75 (12): 5886-97, Dec 2007.
- Christian M. Locha, Arturo B. Ramireza, Yan Liua,
Cassandra L. Satherb, Jeffrey J. Delrowb, Nathalie Schollera, Barbara M.
Garbikaa, Nicole D. Urbanaa, Martin W. Mcintosha, Paul D. Lampea*.
- Use of high density antibody arrays to validate and discover cancer serum biomarkers. Mol Onc. (2007) 1,
313-320.
a Molecular Diagnostics Program, Ppublic Health Sciences, Fred Hutchinson Cancer Research
Center, 1100 Fiarview Avenue North, Seattle, WA 98109-1024, USA
b Genomics Shared Resource, Fred Hutchinson Cancer Research Center, 1100 Fairview Avenue North, Seattle, WA
98109-1024. USA
- Julia E. Dooher, Bobbie L. Schneider, Jonathan C. Reed, and Jaisri R. Lingappa.
- Host ABCE1 is at Plasma Membrane HIV Assembly Sites and its Dissociation from Gag is Linked to Subsequent
Events of Virus Production. Traffic, 2007 Mar;8(3):195-211.
- Bardia Askari, Jenny E. Kanter, Ashley M. Sherrid, Deidre L. Golej, Andrew T. Bender, Joey
Liu, Willa A. Hsueh, Joseph A. Beavo, Rosalind A. Coleman, and Karin E. Bornfeldt.
- Rosiglitazone Inhibits Acyl-CoA Synthetase Activity and Fatty Acid Partitioning to Diacylglycerol and Triacylglycerol
via a Peroxisome Proliferator–Activated Receptor- –Independent Mechanism in Human Arterial Smooth
Muscle Cells and Macrophages. Diabetes 2007 56: 1143-1152.
- Jennifer L. Eklund1, Umut Y. Ulge3, Jennifer Eastberg 3,4 and
Raymond J. Monnat, Jr.1,2*.
- Altered target site specificity variants of the I-Ppol His-Cys box homing endonuclease. Nucleic Acids Research,
2007, No. 17 5839-5850.
1 Department of Genome Sciences,
2 Department of Pathology,
3 the Molecular and Cellular Biology Program, University of Washington, Seattle, WA and
4 Fred Hutchinson Cancer Research Center, Seattle, WA, USA.
- Vigdorovich V, Miller AD, Strong RK (Apr 2007)
- Ability of hyaluronidase 2 to degrade extracellular hyaluronan is not required for its function as a receptor
for jaagsiekte sheep retrovirus, Journal of Virology, 81(7)3124-3129
- Webb A.E., Sanderford, J., Frank, D., Talbot, W.S., Driever, W. and Kimelman,
D.
- Laminin 5 is essential for fin development in the zebrafish. Dev Bio. 2007 Nov., 311(2) 369-82.
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2006
- Harper, EG, Alvares, SM, Carter, WG.
- Wounding activates p38 map kinase and activation transcription factor 3 in leading keratinocytes. J Cell
Sci. 2005 Aug 1;118(Pt 15):3471-85.
- Bickel, KS and Morris, D.R. (2006).
- Silencing the transcriptome’s dark matter: mechanisms for suppressing translation of intergenic transcripts.
Mol Cell, 22, 309-316.
- Blackstone, E, and Roth, M.B., 2006.
- Suspended Animation-like State in Mice Protects against Lethal Hypoxia. in review.
- Malik, HS and Bayes, J.J.
- Genetic conflicts during meiosis and the evolutionary origins of centromere complexity. Biochem Soc Trans.
2006 Aug: 34 (Pt 4): 569-83.
- Brown, H. L., Cherbas, L., Cherbas, P. and Truman, J. W.
- (2006). Use of time-lapse imaging and dominant negative receptors to dissect the steroid receptor control
of neuronal remodeling in Drosophila. Development 133, 275-85.
- Cervantes, Marcella D., Robert S. Coyne, Xiaohui Xi, and Meng-Chao Yao
- The Condensin Complex Is Essential for Amitotic Segregation of Bulk Chromosomes, but Not Nucleoli, in the
Ciliate Tetrahymena thermophila. Mol. Cell. Biol., Jun 2006; 26: 4690 - 4700.
- Eddy, J. and Maizels, N.
- Gene function correlates with potential for G4 DNA formation in the human genome. Nucleic Acids Research.
2006, Vol. 34, No. 14 3887-3896
- Fluegel, Megan L., Tracey J. Parker, and Leo J. Pallanck.
- Mutations of a Drosophila NPC1 Gene Confer Sterol and Ecdysone Metabolic Defects. Genetics 2006 172: 185-196.
doi:10.1534/genetics.105.046565
- Hatch, NE, Hudson M, Seto ML, Cunningham MC, Bothwell M.
- Intracellular retention, degradation and signaling of glycosylation deficient FGFR2 and craniosynostosis
syndrome associated FGFR2C278F. J Biol Chem. 2006 Jul 14; [Epub ahead of print].
- Hatton, BA, Knoepfler PS, Kenney AM, Rowitch, DH de Alborán IM, Olson
JM and Eisenman RN
- N-myc is an Essential Downstream Effector of Shh Signaling During both Normal and Neoplastic Cerebellar
Growth. Cancer research 2006; 66 (17): 1-7.
- Beryl A. Hatton, Paul S. Knoepfler, Anna Marie Kenney, David H. Rowitch, Ignacio
Moreno de Alboran, James M. Olson, and Robert N. Eisenman.
- Cancer Res 2006; 66(17): 8655-61
- Hatton, BA, Pritchard JI and Olson JM.
- Nervous system cancer models: Medulloblastoma. Drug Discovery Today: Disease Models 2006; volume and page
numbers currently unavailable.
- Beryl A. Hatton, Joel I. Pritchard, James M. Olson.
- Nervous system cancer models: Medulloblastoma. Drug Discovery Today:Disease Models 2006; 3(2) 167-74.
- Judge, LM, Haraguchi M, Chamberlain JS.
- Dissecting the signaling and mechanical functions of the dystrophin-glycoprotein complex. J Cell Sci. 2006
Apr 15;119 (Pt 8):1537-46.
- Kaiser, Shari M and Michael Emerman.
- Uracil DNA, glycosylase is dispensable for human immunodeficiency virus type 1 replication and does not
contribute to the antiviral effects of the cytidine deaminase Apobec3G. J Virol. 2006 Jan;80(2):875-82.
- Caren Norden1,3 Manuel Mendoza1,3 Jeroen Dobbelaere1,4 Chitra
V. Kotwaliwale2 Sue Biggins2s and Yves Barral1*.
- The NoCut Pathway Links Completion of Cytokinesis to Spindle Midzone Function to Prevent Chromosome Breakage.
Cell 125, 85-98, April 7, 2006©2006 Elsevier Inc.
1 Institute of Biochemistry, Biology Departm,ent, ETH Zurich, 8093 Zurich, Switzerland
2 Division of Basic Sciences, Fred Hutchinson Cancer Research Center, Seattle, WA 98109, USA
3 These authors contributed equally to this work
4 Present address: The Wellcome Trust/Cancer Research UK Guron Institute, Department of Genetics, Cambridge
CB2 1QN, England, United Kingdom
*Contact: yves.barral@bc.biol.ethz.ch
DOI 10.1016/j.cell.2006.01.045
- Heather H. Cheng1,3 Maria M. Anderson3 F. Clair Hankenson2,3 Lily Johnston3 Chitra
V. Kotwaliwale1,3* and Julie Overbaugh3*.
- Envelope Determinants for Dual-Receptor Specificity in Feline Leukemia Virus Subgroup A and T Variants.
Journal of Virology, Feb. 2006, p.1619-1628. ©2006 American Society for Microbiology.
Program in Molecular and Cellular Biology1 and Department of Microbiology2 University
of Washington and Division of Human Biology, Fred Hutchinson Cancer Research Center3 Seattle, Washington.
- Lien, Wen-Hui, Olga Klezovitch, Tania E. Fernandez, Jeff Delrow, and Valeri Vasioukhin
(2006)
- αE-Catenin controls cerebral cortical size by regulating the hedgehog signaling pathway. Science
311: 1609-1612.
- Lien, Wen-Hui, Olga Klezovitch, and Valeri Vasioukhin.
- Cadherin-catenin proteins in vertebrate development. Curr Opin Cell Biol. 2006 Oct;18(5):499-506.
- Sebastian A. Mikolajczak, Vanessa Jacobs-Lorena, Drew C. MacKellar, Nelly Camargo, Stefan
H.I. Kappe.
- L-FABP is a critical host factor for successful malaria liver stage development. International Journal
for Parasitology 2007 April: 37(5):483-489.
- Maurer, M., and Cooper, J.A. (2006).
- The adaptor protein Dab2 sorts LDL receptors into coated pits independently of AP-2 and ARH. J. Cell Sci.,
119:4235-4246.
- Sarah K. Wootton, Michael J. Metzger, Kelly L. Hudkins, Charles E. Alpers, Denis
York, James C. DeMartini and A. Dusty Miller.
- Lung cancer induced in mice by the envelope protein of jaagsiekte sheep retrovirus (JSRV) closely resembles
lung cancer in sheep infected with JSRV. Retrovirology. 2006, 3:94.
- Murray SM, Picker LJ, Axthelm MK, Linial ML.
- Expanded tissue targets for foamy virus replication with simian immunodeficiency virus-induced immunosuppression.
Journal of Virology 2006 Jan;80(2):663-70.
- Murray SM and Linial ML.
- Foamy virus infection in primates. Review. Journal of Medical Primatology, Special AIDS Edition 2006 Aug;
35 (4-5), 225-35.
- Molly OhAinle, Julie A. Kerns, Harmit S. Malik, and Michael Emerman. (2006)
- Adaptive Evolution and Antiviral Activity of the Conserved Mammalian Cytidine Deaminase APOBEC3H. J. Virol.
80: 3853-3862.
- Powers, R.W., 3rd, Kaeberlein, M., Caldwell, S.D., Kennedy, B.K., and Fields,
S.2006.
- Extension of chronological life span in yeast by decreased TOR pathway signaling. Genes Dev 20(2): 174-184.
- Miriam I. Rosenberg, Sara A. Georges, Amy Asawachaicharn, Erwin Analau, and Stephen
J. Tapscott.
- MyoD inhibits Fstl1 and Utrn expression by inducing transcription of miR-206. The Journal of Cell Biology,
Vol. 175, No. 1, October 9, 2006 77-85.
- Sampietro, James, Caroline L. Dahlberg, Uhn Soo Cho, Thomas R. Hinds, David Kimelman,
and Wenqing Xu.
- (Short Article)Crystal Structure of a β-Catenin/BCL9/Tcf4 Complex. Copyright © 2006 Cell Press.
All rights reserved. Molecular Cell, Vol 24, 293-300, 20 October 2006.
- *Coller HA, *Sang L, Roberts JM (2006)
- A new description of cellular quiescence. PloS Biol 4(3): e83. *Both authors contributed equally to this
work.
- Shimogawa, M.M., Graczyk, B., Gardner, M.K., Francis, S.E., White, E.A., Ess, M., Molk,
J.N., Ruse, C., Niessen, S., Yates J.R., III, Muler, E. G., Bloom, K. Odde D.J., Davis, T.N. (2006)
- Mps1 phosphorylation of Dam1 coupels kinetochores to microtubule plus ends at metaphase. Curr Biol 16:1489-501.
- Speelmon, EC, Livingston-Rosanoff D, Li SS, et al.
- “Genetic association of the retroviral restriction factor TRIM5α with HIV-1 infection.” Manuscript
in press (Mar 2006), J Virol.
- Thomas, PS, Jr, Fraley GS, Damian V, Woodke LB, Zapata F, Sopher BL, Plymate SR,
La Spada AR.
- Loss of endogenous androgen receptor protein accelerates motor neuron degeneration and accentuates androgen
insensitivity in a mouse model of X-linked spinal and bulbar muscular atrophy. Hum Mol Genet. 2006 Jul 15;
15(14):2225-38.
- Laura E. Swaim, Lynn E. Connolly, Hannah E. Volkman, Olivier Humbert, Donald E.
Born, and Lalita Ramakrishnan.
- Mycobacterium marinum Infection of Adult Zebrafish Causes Caseating Granulomatous Tuberculosis and is Mordeated
by Adaptive Immunity. Infection and Immunity, Nov. 2006, p. 6108-6117.
- Xia, Q, Wang T, Park Y, Lamont R and Hackett M.
- Differentialquantitative proteomics of Porphyromonas gingivalis by linear ion trap mass spectrometry: non-label
methods, q-values and LOWESS curve fitting. International Journal of Mass Spectrometry, in press.
- Xia, Q, Hendrickson EL, Zhang Y, Wang T, Taub F, Moore BC, Porat I, Whitman WB,
Hackett M, Leigh JA.
- Quantitative proteomics of the archaeon Methanoccus maripaludis validated by microarray analysis and real
time PCR. Mol Cell Proteomics, 2006 May, 5.5, 868-881.
- Li Q, Xia Q, Want T, Meila M, Hackett M.
- Analysis of the stochastic variation in LTQ singlescan mass spectra. Rapid Commun Mass Spectrom, 2006 Apr,
20, 1551-1557.
- Porat I, Kim W, Hendrickson EL, Xia Q, Zhang Y, Wang T, Taub F, Moore BC, Anderson
IJ, Hackett M, Leigh JA, Whitman WB.
- Disruption of the operon encoding Ehb hydrogenase limits anabolic CO2 assimilation in the archaeon Methanoccus
maripaludis. J Bacteriol. 2006 Feb;188, 1373-1380.
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2005
- Law, G.L.*, Bickel, K.S.*, MacKay, V.L. *, and Morris, D.R. (2005).
- The under-translated transcriptome reveals widespread translational silencing by alternative 5’ transcript
leaders. Genome Biol. 6, R111. *Equal contribution
- Blackstone E, Morrison M, Roth MB.
- H2S induces a suspended animation-like state in mice. Science. 2005 Apr 22;308(5721):518.
- Heather L.D. Brown1, Lucy Cherbas2, Peter Cherbas2 and
James W. Truman1.
- Use of time-lapse imaging and dominant negative receptors to dissect the steroid receptor control of neuronal
remodeling in Drosophila. Development 133, 275-285 doi:10.131/dev.02191. October 2005.
1 Department of Biology, University of Washington, Seattle WA 98195
2 Department of Biology and Center for Genomics and bioinformatics, Indiana University, Bloomington, IN 47405
- Marcella D Cervantes, et al.
- The CNA1 Histone of the Ciliate Tetrahymena thermophila Is Essential for Chromosome Segregation in the
Germline Micronucleus. Mol Biol Cell. 2006 Jan;17(1):485-97. Epub 2005 Oct 26.
- Clay H, Ramakrishnan L.
- Multiplex fluorescent In Situ Hybridization in Zebrafish Embryos Using Tyramide Signal Amplification. Zebrafish
Aug , 2005, Vol.2, No. 2:105-111
- Collins, KA, Castillo, A, Tatsutani SY, Biggins, S. 2005.
- De novo kinetochore assembly requires the centromeric histone H3 variant. Molecular Biology of the Cell,
16:1549-5660.
- Susan L. Fink and Brad T. Cookson.
- Apoptosis, Pyroptosis, and Necrosis: Mechanistic Description of Dead and Dying Eukaryotic Cells. Infect
Immun, 2005. 73(4): 1907-1916.
- Grant, K.A., Raible, D.W, Piotrowski, T.
- Regulation of latent sensory hair cell precursors by glia in the zebrafish lateral line. Neuron 45(1): 69-80.
2005.
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1 Division of Basic Sciences, Fred Hutchinson Cancer Research Center (FHCRC), 1100
Fairview Avenue North, Seattle, WA 98109, USA.
2 Graduate Program in Molecular and Cellular Biology, University of Washington, Seattle, WA 98195, USA.
3 Department of Biochemistry and Howard Hughes Medical Institute, University of Washington, Seattle, WA 98195,
USA.
4 Department of Pharmaceutical Sciences, College of Pharmacy, Washington State University, Pullman, WA 99164-6534,
USA.
* http://www.sciencemag.org/cgi/content/full/308/5723/857#COR1#COR1
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1Molecular and Cellular Biology Program, University of Washington School of Medicine,
Seattle, WA 98195, USA
2Department of Neurobiology and Anatomy, University of Utah, Salt Lake City, UT 84132, USA
3Department of Biological Structure, University of Washington School of Medicine, Seattle, WA 98195, USA
4Howard Hughes Medical Institute and Department of Pharmacology, University of Washington School of Medicine,
Seattle, WA 98195, USA
5Center for Developmental Biology, University of Washington School of Medicine, Seattle, WA 98195, USA
‡Author for correspondence (e-mail: draible@u.washington.edu)
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2003
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