2002

Benanti, J.A., D.K. Williams, K.L. Robinson, H.L. Ozer, and D.A. Galloway.

Induction of extracellular matrix-remodeling genes by the senescence-associated protein APA-1. Mol Cell Biol. 2002 Nov;22(21):7385-97.

Hastings, M.D., Bates, S. J., Blackstone, E.A., Mutabingwa,T.K. and Sibley, C.H.

2002. Highly pyrimethamine-resistant alleles of dihydrofolate reductase in isolates of Plasmodium falciparum from Tanzania. Transactions of the Royal Society of Tropical Medicine and Hygiene Nov-Dec; 96(6):674-6.

Buckner FS, Eastman RT, Nepomuceno-Silva JL, et al.

Cloning, heterologous expression, and substrat specificities of protein farnesyltransferases from Trypanosoma cruzi and Leishmania major. Mol Biochem Parasitol. 2002 Jul; 122:181-8.

J. Muse Davis, Hilary Clay, Jessica L. Lewis, Nafisa Ghori, Philippe Herbomet, and Lalita Ramakrishnan.

Real-Time Visualization of Mycobaterium-Macrophage Interactions Leading to Initiation of Granuloma Formation in Zebrafish Embryos. Immunity, Vol. 17, 693-702, December, 2002.

James KE, Dorman JB, Berg CA.

Mosaic analyses reveal the function of Drosophila Ras in embryonic dorsoventral patterning and dorsal follicle cell morphogenesis. Development. 2002 May;129(9):2209-22.

Ward, E.J., I. Thaipisuttikul, M. Terayama, R.L. French, S.M. Jackson, K.A. Cosand, K.J. Tobler, J.B. Dorman, C.A. Berg.

GAL4 enhancer trap patterns during Drosophila development. Genesis 2002 Sept-Oct.; 34(1-2): 46-50.

Kooperberg, C., Fazzio, T. G., Delrow, J. J., and Tsukiyama, T. (2002).

Improved background correction for spotted DNA microarrays. J Comput Biol 9, 55-66. 2002

Huang, R., Y. Lin, CC Wang, J. Gano, B. Lin, Q. Shi, A. Boynton, J. Burke, RP Huang.

Connexin 43 suppresses human glioblastoma cell growth by down-regulation of monocyte chemotctic protein 1, as discovered using protein array technology. Cancer Res 62(10):2806-12.

Liu, YG, J. Gano, R. Huang, Y. Lin, WM Wang, RP Huang.

Analysis of gene expression in Egr-1 transfected human fibrosarcoma cells. J Sur Oncol 80(4):190-6.

Klinghoffer, RA, TG Hamilton, R. Hoch, and P. Soriano.

An allelic series at the PDGFalphaR locus indicates unequal contributions of distinct signaling pathways during development. Dev Cell. 2002 Jan;2(1):103-13.

Ireton, GC, G. McDermott, ME Black, and BL Stoddard.

The structure of Escherichia coli cytosine deaminase. J Mol Biol. 2002 Jan 25;315(4):687-97.

Niswender CM, Ishihara RW, Judge LM, Zhang C, Shokat KM, McKnight GS.

Protein engineering of protein kinase A catalytic subunits results in the acquisition of novel inhibitor sensitivity. J Biol Chem. 277(32):28916-22.

DJ Sidjanin, JK Lowe, JL McElwee, BS Milne, TM Phippen, DR Sargan, GD Aguirre, GM Acland, and EA Ostrander.

Canine CNGB3 mutations establish Cone Degeneration as orthologous to the human achromatopsia locus ACHM3. Hum Mol Genet, in press. (2002)

Graham, J.; Hagopian, W. A.; Kockum, I.; Li, L. S.; Sanjeevi, C. B.; Lowe, R. M.; Schaefer, J. B.; Zarghami, M.; Day, H. L.; Landin-Olsson, M.; Palmer, J. P.; Janer-Villanueva, M.; Hood, L.; Sundkvist, G.; Lernmark, A.; Breslow, N.; Dahlquist, G.; Blohme, G.

Genetic effects on age-dependent onset and islet cell autoantibody markers in type 1 diabetes. Diabetes, 2002. 51(5): p. 1346-55.

Tompa R, McCallum CM, Delrow J, Henikoff JG, van Steensel B, Henikoff S.

Genome-wide profiling of DNA methylation reveals transposon targets of CHROMOMETHYLASE3. Curr Biol. 2002 Jan 8;12(1):65-8.

Padilla PA, Nystul TG, Zager RA, Johnson AC, Roth MB.

Dephosphorylation of Cell Cycle-regulated Proteins Correlates with Anoxia-induced Suspended Animation in Caenorhabditis elegans.
Mol Biol Cell. 2002 May;13(5):1473-83.

Bergstrom D.A., B.H. Penn, A. Strand, R.L. Perry, M.A. Rudnicki, S.J. Tapscott.

Promoter-specific regulation of MyoD binding and signal transduction cooperate to pattern gene expression. Mol Cell. 2002 Mar; 9(3): 587-600.

Donald A. Bergstrom, Bennett H. Penn, Andrew Strand, Robert LS. Perry, Michael Rudnicki, and Stephen J. Tapscott.

Promoter-Specific Regulation of MyoD Binding and Signal Transduction Cooperate to Pattern Gene Expression. Molecular Cell, Vol. 9, 587-600, March 2002.

Pinsky BA, Biggins S.

Top-SUMO wrestles centromeric cohesion. Dev Cell. 2002 Jul;3(1):4-6.

Nelson, PS, C. Pritchard, D. Abbott, N. Clegg.

The human (PEDB) and mouse (mPEDB) Prostate Expression Databases. Nucleic Acids Res. 30(1) (2002):218-20.

Rosenberg, MI and Parkhurst, SM.

Drosophila Sir2 is required for heterochromatic silencing and by euchromatic Hairy/E(Spl) bHLH repressors in segmentation and sex determination. Cell. 2002 May 17;109(4):447-58.

Sawhney RK, Howard J.

Slow local movements of collagen fibers by fibroblasts drive the rapid global self-organization of collagen gels. J Cell Biol. 2002 Jun 10;157(6):1083-91.

Sebe, J.Y., E.D. Eggers, A.J. Berger.

Differential effects of ethanol on GABAA versus glycine receptor mediated synaptic currents in brainstem motoneurons. Soc. Neurosci Abstr 28 2002.

Speelmon, et al.

“Cloning, heterologous expression, and substrate specificities of protein farnesyltransferases from Trypanosoma cruzi and Leishmania major.” Mol Biochem Parasitol. 2002 Jul; 122:181-8.

Stear, J. H. and M. B. Roth

Characterization of HCP-6, a C. elegans protein required to prevent chromosome twisting and merotelic attachment. Genes Dev. (2002) 16: 1498-508.

Vary, J.C., V.K. Gangaraju, J. Qin, C.C. Landel, C. Kooperberg, B. Bartholomew, T. Tsukiyama.

Yeast Isw 1p forms two separable complexes in vivo. Mol Cell Biol. 2003; 23(1):

Jesse Howe, D.G., Wiley, J.C., and McKnight, G.S.

Molecular and behavioral effects of a null mutation in all PKA C beta isoforms. Mol Cell Neurosci (2002), 20(3), 515-24.

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2001

Coil D.A., J.H. Strickler, S.K. Rai, A.D. Miller.

Jaagsiekte sheep retrovirus Env protein stabilizes retrovirus vectors against inactivation by lung surfactant, centrifugation, and freeze-thaw cycling. J Virol. 2001 Sep; 75(18): 8864-67.

Mefford, H.D., E. Linardopoulou, D. Coil, G. van den Engh, B.J. Trask.

Comparative sequencing of a multicopy subtelomeric region containing olfactory receptor genes reveals multiple interactions between non- homologous chromosomes. Hum Mol Genet. 2001 Oct 1; 10(21): 2363-72.

Tyler, J.K., K.A. Collins, Š., J.T. Kadonaga.

Interaction between the Drosophila CAF-1 and ASF1 chromatin assembly factors. Molec Cell Biol 21 (2001):6574-84.

Fazzio, T. G., Kooperberg, C., Goldmark, J. P., Neal, C., Basom, R., Delrow, J., and Tsukiyama, T. (2001).

Widespread collaboration of Isw2 and Sin3-Rpd3 chromatin remodeling complexes in transcriptional repression. Mol Cell Biol 21, 6450-6460. 2001

Huang, RP, MZ Hossain, R. Huang, J. Gano, Y. Fan, AL Boynton

Connexin 43 (cx43) enhances chemotherapy-induced apoptosis in human glioblastoma cells. Int J Cancer 1;92 (1): 130-8.

Gewin, L., DA Galloway

E box-dependent activation of telomerase by human papillomavirus type 16 E6 does not require induction of c-myc. J. Virol. 75(15) (2001):7198-201.

Meima, R., HM Rothfuss, L. Gewin, ME Lidstrom.

Promoter cloning in the radioresistant bacterium Deinococcus radiodurans. J. Bacteriol 183(10) (2001):3169-75.

Ireton, GC, ME Black, and BL Stoddard.

Crystallization and preliminary X-ray analysis of bacterial cytosine deaminase. Acta Crystallogr D Biol Crystallogr. 2001 Nov;57(Pt 11):1643-5.

Li, R., JH Faraco, L. Ling, X. Lin, W. Rogers, JK Lowe, EA Ostrander, E. Mignot.

Physical and Radiation Hybrid Mapping of Canine Chromosome 12, in a Region Corresponding to Human Chromosome 6p12-6q12. Genomics 73(3):299-315.

Miller A.B., J.K. Lowe, E.A. Ostrander, F. Galibert and K.E. Murphy.

Cloning, Sequence analysis and Radiation Hybrid Mapping of a Mammalian krt2p Gene. Functional and Integrative Genomics 1(5):305-11. (2001)

Li, R., J.H. Faraco, L. Lin, X. Lin L. Hinton, W. Rogers, J.K. Lowe, E.A. Ostrander and E. Mignot.

Physical and Radiation Hybrid Mapping of Canine Chromosome 12, in a Region Corresponding to Human Chromosome 6p12-6112. (2001) Genomics 73(3):299-315.

Credille, K.M., P.J. Venta, M. Breen, J.K. Lowe, K.E. Murphy, E.A. Ostrander and R.W. Dunstan.

Characterization and physical mapping of the canine transglutaminase 1 gene. (2001) Cytogenet Cell Genet 93(1-2):73-6.

Credille, KM, PJ Venta, M. Breen, JK Lowe, KE Murphy, EA Ostrander and RW Dunstan.

DNA sequence and physical mapping of the canine transglutaminase 1 gene. Cytogenet Cell Genet. 2001;93(1-2):73-6.

Miller, A.B., JK Lowe, EA Ostrander, F. Galibert and KE Murphy.

Cloning, sequence analysis and radiation hybrid mapping of a mammalian krt2p gene. Funct Integr. Genomics 1(5):305-311.

Lindroth AM, Cao X, Jackson JP, Zilberman D, McCallum CM, Henikoff S, Jacobsen SE.

Requirement of CHROMOMETHYLASE3 for maintenance of CpXpG methylation. Science. 2001 Jun 15;292(5524):2077-80.

Colbert T, Till BJ, Tompa R, Reynolds S, Steine MN, Yeung AT, McCallum CM, Comai L, Henikoff S.

High-throughput screening for induced point mutations. Plant Physiol. 2001 Jun;126(2):480-4.

Parker, HG, X. Yuhua, CS Mellersh, S. Khan, H. Shibuya, GS Johnson, EA Ostrander.

Meiotic linkage mapping of 52 genes onto the canine map does not identify significant levels of microrearrangement. Mammalian Genome 12(9) (2001):713-718.

Filippova, GN, CP Thienes, BH Penn, DH Cho, YJ Hu, JM Moore, TR Klesert, VV Lobanenkov, SJ Tapscott.

CTCF-binding sites flank CTG/CAG repeats and form a methylation-sensitive insulator at the DM1 locus. Nat. Genet. 28(4) (2001):335-43.

Penn, BH, CA Berkes, DA Bergstrom, SJ Tapscott.

How to MEK muscle. Mol Cell 8(2) (2001):245-246.

Pritchard, CC, L. Hsu, J. Delrow, PS Nelson.

Project normal: Defining normal variance in mouse gene expression. Proc Natl. Acad. Sci USA 98(23) (2001):13266-71.

Prober, D.A., and B.A. Edgar.

Growth regulation by oncogenes‹new insights from model organisms. Current Opinion in Genetics & Development 11 (2001):19-26.

Glavas, NA, C. Ostenson, JB Schaefer, V. Vasta and JA Beavo.

T cell activation up-regulates cyclic nucleotide phosphodiesterases 8A1 and 7A3. Proc Natl Acad Sci U S A. 2001 May 22;98(11):6319-24.

Wong ST, Baker LP, Trinh K, Hetman M, Suzuki LA, Storm DR, Bornfeldt KE

Adenylyl cyclase 3 mediates prostaglandin E (2)-induced growth inhibition in arterial smooth muscle cells. J Biol Chem 2001 Sep 7; 276(36): 34206-12.

Wong ST, Trinh K, Hacker B, Chan GC, Lowe G, Gaggar A, Xia Z, Gold GH, Storm DR.

Disruption of the type III adenylyl cyclase gene leads to peripheral and behavioral anosmia in transgenic mice. Neuron 2000 Sep; 27(3): 487-97.

Poser S, Impey S, Trinh K, Xia Z, Storm DR.

SRF-dependent gene expression is required for PI3-kinase-regulated cell proliferation EMBO J 2000 Sep 15; 19(18): 4955-66.

Rai, SK, FM Duh, V. Vigdorovich, A. Danilkovitch-Miagkova, MI Lerman, AD Miller.

Candidate tumor suppressor HYAL2 is a glycosylphosphatidylinositol (GPI)-anchored cell-surface receptor for jaagsiekte sheep retrovirus, the envelope protein of which mediates oncogenic transformation. Proc Natl Acad Sci U S A 98(8):4443-48.

Waybright SM, Singleton CP, Wachter K, Murphy CJ, Bunz UH.

Oligonucleotide-directed assembly of materials: defined oligomers. J Am Cehm Soc. 2001 Mar 7;128(9):1828-33.

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2000

Anderson MM, Lauring AS, Burns CC, Overbaugh J.

Identification of a cellular cofactor required for infection by feline leukemia virus. Science. 2000 Mar 10;287(5459):1828-30.

Plaxco KW, Larson S, Ruczinski I, Riddle DS, Thayer EC, Buchwitz B, Davidson AR, Baker

Evolutionary conservation in protein folding kinetics. J Mol Biol. 2000 Apr 28;298(2):303-

Caviedes L, Lee TS, Gilman RH, et al.

Rapid, efficient detection and drug susceptibility testing of Mycobacterium tuberculosis in sputum by microscopic observation of broth cultures. The Tuberculosis Working Group in Peru. J Clin Microbio. 2000 Mar; 38:1203-8.

Cervantes MD, Farah JA, Smith GR.

Meiotic DNA breaks associated with recombination in S. pombe. Mol Cell. 2000 May;5(5):883-8.

Galburt EA, Chadsey MS, Jurica MS, Chevalier BS, Erho D, Tang W, Monnat RJ Jr, Stoddard BL.

Conformational Changes and Cleavage by the Homing Endonuclease I-PpoI: A Critical Role for a Leucine Residue in the Active Site. J Mol Biol. 2000 Jul 21;300(4):877-887.

Klesert TR, Cho DH, Clark JI, Maylie J, Adelman J, Snider L, Yuen EC, Soriano P, Tapscott SJ.

Mice deficient in Six5 develop cataracts: implications for myotonic dystrophy. Nat Genet. 2000 May;25(1):105-9.

Dallman JE, Dorman JB, Moody WJ.

Action potential waveform voltage clamp shows significance of different Ca2+ channel types in developing ascidian muscle. J Physiol (Lond). 2000 Apr 15;524 Pt 2:375-86.

Goldmark, J. P., Fazzio, T. G., Estep, P. W., Church, G. M., and Tsukiyama, T.

The Isw2 chromatin remodeling complex represses early meiotic genes upon recruitment by Ume6p. Cell 103, 423-433. 2000

Flory MR, Moser MJ, Monnat RJ Jr, Davis TN.

Identification of a human centrosomal calmodulin-binding protein that shares homology with pericentrin. Proc Natl Acad Sci U S A. 2000 May 23;97(11):5919-23.

Goldmark, J. P., Fazzio, T. G., Estep, P. W., Church, G. M., and Tsukiyama, T.

The Isw2 chromatin remodeling complex represses early meiotic genes upon recruitment by Ume6p. Cell 103, 423-433. (2000)

Goetz DH, Willie ST, Armen RS, Bratt T, Borregaard N, Strong RK.

Ligand preference inferred from the structure of neutrophil gelatinase associated lipocalin. Biochemistry. 2000 Feb 29;39(8):1935-41.

Ireton GC, Stewart L, Parker LH, Champoux JJ.

Expression of Human Topoisomerase I With a Partial Deletion of the Linker Region Yields Monomeric and Dimeric Enzymes That Respond Differently to Camptothecin. J Biol Chem. 2000 May 25 [epub ahead of print]

James EA, Wang C, Wang Z, Reeves R, Shin JH, Magnuson NS, Lee JM.

Production and characterization of biologically active human GM-CSF secreted by genetically modified plant cells. Protein Expr Purif. 2000 Jun;19(1):131-8.

Kimbrough TG, Miller SI.

Contribution of Salmonella typhimurium type III secretion components to needle complex formation. Proc Natl Acad Sci U S A. 2000. Sep 26;97(20):11008-13.

Gwynn SR, Hankenson FC, Lauring AS, Rohn JL, Overbaugh J.

Feline leukemia virus envelope sequences that affect T-cell tropism and syncytium formation are not part of known receptor-binding domains. J Virol. 2000 Jul;74(13):5754-61.

Hermann, G. J., B. Leung, and J. R. Priess (2000).

Left-right asymmetry in C. elegans intestine organogenesis involves a LIN-12/Notch signaling pathway. Development 127: 3429-3440.

Hermann, G. J., B. Leung, and J. R. Priess, 2000.

Left-right asymmetry in C. elegans intestine organogenesis involves a LIN-12/Notch signaling pathway. Development 127: 3429-3440.

Lowe, R. M.; Graham, J.; Sund, G.; Kockum, I.; Landin-Olsson, M.; Schaefer, J. B.; Torn, C.; Lernmark, A.; Dahlquist, G.

The length of the CTLA-4 microsatellite (AT)N-repeat affects the risk for type 1 diabetes. Diabetes Incidence in Sweden Study Group. Autoimmunity, 2000. 32(3): p. 173-80

Matulef, K.I., Flynn, G.E., and Zagotta, W.N.

Molecular Rearrangements in the Ligand-Binding Domain of Cyclic Nucleotide-Gated Channel. Biophysical Journal 78:148A (2000).

Henikoff JG, Pietrokovski S, McCallum CM, Henikoff S.

Blocks-based methods for detecting protein homology. Electrophoresis. 2000 May;21(9):1700-

McCallum CM, Comai L, Greene EA, Henikoff S.

Targeted screening for induced mutations. Nat Biotechnol. 2000 Apr;18(4):455-7.

McCallum CM, Comai L, Greene EA, Henikoff S.

Targeting induced local lesions IN genomes (TILLING) for plant functional genomics. Plant Physiol. 2000 Jun;123(2):439-42.

McCallum CM, Comai L, Greene EA, Henikoff S.

Targeting induced local lesions IN genomes (TILLING) for plant functional genomics. Plant Physiol. 2000 Jun;123(2):439-42.

McCallum CM, Comai L, Greene EA, Henikoff S.

Targeted screening for induced mutations. Nat Biotechnol. 2000 Apr;18(4):455-7.

Henikoff JG, Pietrokovski S, McCallum CM, Henikoff S.

Blocks-based methods for detecting protein homology. Electrophoresis. 2000 May;21(9):1700-6.

Goutte C, Hepler W, Mickey KM, Priess JR.

aph-2 encodes a novel extracellular protein required for GLP-1-mediated signaling. Development. 2000 Jun;127(11):2481-92.

Kwok WW, Liu AW, Novak EJ, Gebe JA, Ettinger RA, Nepom GT, Reymond SN, Koelle DM.

HLA-DQ tetramers identify epitope-specific T cells in peripheral blood of herpes simplex virus type 2-infected individuals: direct detection of immunodominant antigen-responsive cells. J Immunol. 2000 Apr 15;164(8):4244-9.

Novak, E., J. E. Ortqvist, E. Nord, L. Edwall, C. S. Hampe, L. Berkis. B. E. Persson, and A. Lernmark. 2000.

Stability of disease-associated antibody titers in pregnant woman with type 1 diabetes with or without residual beta-cell function. Diabetes Care 23:1019.

Zerr DM, Huang ML, Corey L, Erickson M, Parker HL, Frenkel LM.

Sensitive method for detection of human herpesviruses 6 and 7 in saliva collected in fieldstudies. J Clin Microbiol. 2000 May;38(5):1981-3.

Prober DA, Edgar BA.

Ras1 promotes cellular growth in the Drosophila wing. Cell. 2000 Feb 18;100(4):435-46.

Lowe, R.M., J. Graham, G. Sund, I. Kockum, M. Landin-Olsson, J.B. Schaefer, C. Torn, A. Lernmark and G. Dahlquist.

The length of the CTLA-4 microsatellite (AT)N-repeat affects the risk for type I diabetes. Diabetes Incidence in Sweden Study Group. Autoimmunity 32(3):173-80.

Speelmon EC, Checkley W, Gilman RH, et al.

Cholera incidence and El Nino-related higher ambient temperature. JAMA. 2000 Jun; 283;3072-4.

Mallqui V, Speelmon EC, Verastegui M, et al.

Sonicated diagnostic immunoblot for bartonellosis. Clin Diagn Lab Immunol. 2000 Jan; 7:1-5.

Mallqui V, Speelmon EC, Verastegui M, et al.

“Sonicated diagnostic immunoblot for bartonellosis.” Clin Diagn Lab Immunol. 2000 Jan; 7:1-5

Speelmon et al,

"Rapid, efficient detection and drug susceptibility testing of Mycobacterium tuberculosis in sputum by microscopic observation of broth cultures." The Tuberculosis Working Group in Peru.” J Clin Microbiol. 2000 Mar; 38:1203-8.

Speelmon EC, Checkley W, Gilman RH, et al.

“Cholera incidence and El Niño-related higher ambient temperature.” JAMA. 2000 Jun; 283:3072-4.

Tarr PI, Bilge SS, Vary JC Jr, Jelacic S, Habeeb RL, Ward TR, Baylor MR, Besser TE.

Iha: a novel Escherichia coli O157:H7 adherence-conferring molecule encoded on a recently acquired chromosomal island of conserved structure. Infect Immun. 2000 Mar;68(3):1400-7.

Farr G.H. 3rd, Ferkey D.M., Yost C., Pierce S.B., Weaver C., Kimelman D.

Interactino among GSK-3, GBP, axin, and APC in Xenopus axis specification. J Cell Biol. 2000 Feb 21; 148(4):691-702

Graham T.A., Weaver C., Mao F., Kimelman D., Xu W.

Crystal structure of a beta-catenin/Tcf complex. Cell. 2000 Dec. 8; 103(6):885-96.

Thiele TE, Willis B, Stadler J, Reynolds JG, Bernstein IL, McKnight GS.

High ethanol consupmtion and low sensitivity to ethanol-induced sedation in protein kinase A-mutant mice. J Neurosci (Online). 2000 May 15;20(10):RC75.

Ikari, Y., Kazuo Fujikawa, Karen O Yee and Stephen M. Schwartz.

a1-proteinase inhibitor, a1-antichymostrypsin or a2-macroglobulin is required for vascular smooth muscle cell spreading in three-dimensional fibrin gel. Journal of Biological Chemistry, 275(17): 12799-12805, 2000.

Ikari, Y., Karen O Yee, Thomas S. Hatsukami and Stephen M. Schwartz.

Human carotid artery smooth muscle cells rarely express alpha(v)beta3 integrin at sites of recent plaque rupture. Thrombosis and Haemostasis, 84(2):338-344, 2000.

Ikari, Y., Karen O Yee and Stephen M. Schwartz.

Role of alpha5beta1 and alphavbeta3 on smooth muscle cell spreading and migration in fibrin gels. Thrombosis and Haemostasis, 84(4):701-705, 2000.

Yee, KO, Yuji Ikari, Sarah Bodary and Stephen M. Schwartz.

Kistrin inhibits human smooth muscle cell interaction with fibrin. Thrombosis Research. 97: 39-60, 2000.

Chia, DW, Yoder TJ, Reiter WD, Gibson SI.

Fumaric acid: an overlooked form of fixed carbon in Arabidopsis and other plant species. Planta. 2000 Oct;211(5):743-51.

Tennessee J. Yoder, Chad G. Pearson, Kerry Bloom, and Trisha N. Davis.

The Saccharomyces cerevisiae spindle pole body is a dynamic structure. MBC in Press, published May 3, 2003.

Yudkovsky, N.; Ranish, J.A.; Hahn, S. (2000).

transcription reinitiation intermediate that is stabilized by activator. Nature 408,225-229.

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1999

Ailion, Michael, Inoue, T., Weaver, C.I., Holdcraft, R.W. and Thomas, J.H.

Neurosecretory control of aging in Caenorhabditis elegans. Proc. Natl. Acad. Sci. USA. 96:7394-7397.

Paradis, S., Ailion, Michael, Toker, A., Thomas, J.H. and Ruvkun, G.

1999. A PDK1 homolog is necessary and sufficient to transduce AGE-1 PI3 kinase signals that regulate diapause in Caenorhabditis elegans. Genes & Dev. 13:1538-1452.

Barton, Greg M. and A. Y. Rudensky.

Requirement for Diverse, Low-Abundance Peptides in Positive Selection of T Cells. Science 283:67-70.

Passalaris, TM, JA Benanti, L Gewin, T Kiyono, and DA Galloway (1999)

The G2 checkpoint is maintained by redundant pathways. Mol. Cell. Biol. 19:5872-5881.

Brannon, M, Brown, Jeffery D.,, Bate, R., Kimelman, D. and Moon, R.T.

XCtBP is a XTcf-3 co-repressor with roles throughout Xenopus development. Development 126:3159-3170.

Buaas FW, Lee K, Edelhoff S, Disteche C, Braun RE.

Cloning and characterization of the mouse interleukin enhancer binding factor 3 (Ilf3) homologin a screen for RNA binding proteins. Mamm Genome. 1999 May;10(5):451-6

Buchwitz BJ, Ahmad K, Moore LL, Roth MB, Henikoff S.

A histone-H3-like protein in C. elegans. Nature. 1999 Oct 7;401(6753):547-8.

Choy RK, Thomas JH.

Fluoxetine-resistant mutants in C. elegans define a novel family of transmembrane proteins. Mol Cell. 1999 Aug;4(2):143-52.

Davies, R.T., Goetz, David H.,, Lasswell, J., Anderson, M.N. and Bartel, B.

IAR3 encodes an auxin conjugate hydrolase from Arabidopsis. Plant Cell 11:365-376.

Hatch N and Olsen B (1999).

Hemangioma: A Study of Endothelial Cell Clonality. Thesis and Oral Presentation. Harvard School of Dental Medicine, Boston, MA.

Hoch, R. V., Thompson, D. A., Baker, R. J., Weigel, R. J. (1999)

GATA-3 is expressed in association with estrogen receptor in breast cancer. Intl. J. Cancer 84(2): 122-128.

Wilson, M. A., Hoch, R. V., Ashcroft, N. R., Kosinski, M. E., Golden, A. (1999)

A Caenorhabditis elegans wee1 homolog is expressed in a temporally and spatially restricted pattern during embryonic development. Biochim. Biophys. Acta 1445(1): 99-109.

Stewart L, Ireton GC, Champoux JJ.

A functional linker in human topoisomerase I is required for maximum sensitivity to camptothecin in a DNA relaxation assay. J Biol Chem. 1999 Nov 12;274(46):32950-60.

Leung, B., G. J. Hermann, and J. R. Priess (1999).

Organogenesis of the Caenorhabditis elegans Intestine. Dev. Biol. 216: 114-134.

Leung, B., G. J. Hermann, and J. R. Priess, 1999.

Organogenesis of the Caenorhabditis elegans Intestine. Developmental Biology 2 16: 114-134

Li, Linsong, Yee, C. and Beavo, J.A.

CD3- and CD28-Dependent Induction of PDE7 Required for T Cell Activation. Science 283:848-851.

Undlien, D. E.; Kockum, I.; Ronningen, K. S.; Lowe, R.; Saanjeevi, C. B.; Graham, J.; Lie, B. A.; Akselsen, H. E.; Lernmark, A.; Thorsby, E.

HLA associations in type 1 diabetes among patients not carrying high-risk DR3-DQ2 or DR4-DQ8 haplotypes. Tissue Antigens, 1999. 54(6): p. 543-51.

Mohibullah N, Donner A, Ippolito JA, Williams T.(1999)

SELEX and missing phosphate contact analyses reveal flexibility within the AP-2[alpha] protein: DNA binding complex. Nucleic Acids Res. 27(13):2760-9

Matulef, K., Flynn, G.E., and Zagotta, W.N. (1999)

Molecular Rearrangements in the Ligand-Binding Domain of Cyclic Nucleotide-Gated Channels. Neuron 24:443-452.

Matulef, K., Flynn, G.E., and Zagotta, W.N. (1999)

Cysteine-scanning Mutagenesis of the Cyclic Nucleotide-Gated Channel Ligand Binding rnal 76:A337.

Knodler LA, Noiva R, Mehta K, McCaffery JM, Aley SB, Svard SG, Nystul TG, Reiner DS, Silberman JD, Gillin FD.

Novel proteinDomain. Biophysical Jou-disulfide isomerases from the early-diverging protist Giardia lamblia. J Biol Chem. 1999 Oct 15;274(42):29805-11.

Novak, E. J. A. W. Liu, G. T. Nepom, and W. W. Kwok. 1999.

MHC class II tetramers identify peptide-specific human CD4 (+) T cells proliferating in response to influenza A antigen. J. Clin. Invest 104:R63

Waskiewicz AJ, Johnson JC, Penn B, Mahalingam M, Kimball SR, Cooper JA.

Phosphorylation of the cap-binding protein eukaryotic translation initiation factor 4E by protein kinase Mnk1 in vivo. Mol Cell Biol. 1999 Mar;19(3):1871-80.

Johnston LA, Prober DA, Edgar BA, Eisenman RN, Gallant P.

Drosophila myc regulates cellular growth during development. Cell. 1999 Sep 17;98(6):779-90.

Ranish Jeff A., Yudkovsky, N. and Hahn. S.

Intermediates in formation and activity of the RNA polymerase II preinitiation complex: holoenzyme recruitment and a postrecruitment role for the TATA box and TFIIB. Genes Dev. 13:49-63.

Baskin, DG, MW Schwartz, RJ Seeley, SC Woods, D Porte, Jr., JF Breininger, Z. Jonak, J. Schaefer, M. Krouse, C. Burghardt, LA Campfield, P. Burn and JP Kochan.

Leptin receptor long-form splice-variant protein expression in neuron cell bodies of the brain and co-localization with neuropeptide Y mRNA in the arcuate nucleus. J Histochem Cytochem 47(3):353-62.

Zavosh, A., J. Schaefer, A. Ferrel and D.P. Figlewicz.

Desipramine treatment decreases 3H-nisoxetine binding and norepinephrine transporter mRNA in SK-N-SHSY5Y cells. Brain Res Bull 49(4):291-5.

Bowers, P., Schaufler, Lawrence, and Klevit, R.

A Folding Transition and Novel Zinc Finger Accessory Domain in the Transcription Factor ADR1. Nature Struct. Biol. 6:478-85.

Liu C, Vigdorovich V, Kapur V, Abrahamsen MS.

A random survey of the Cryptosporidium parvum genome. Infect Immun. 1999 Aug;67(8):3960-9.

Wiley, Jesse C ., Wailes, Lauren A., Idzerda, Rejean L . and McKnight, G Stanley.

Role of Regulatory Subunits and Protein Kinase Inhibitor (PKI) in Determining Nuclear Localization and Activity of the Catalytic Subunit of Protein Kinase A. Journal of Biological Chemistry. 274: 6381-87.

Wiley JC, Wailes L A, Idzerda R L, and McKnight GS

Role of regulatory subunits and protein kinase inhibitor (PKI) in determining nuclear localization and activity of the catalytic subunit of protein kinase A. J Biol Chem, 274(10), 6381-7.(1999)

Barrett MT, Sanchez CA, Prevo LJ, Wong DJ, Galipeau PC, Paulson TG, Rabinovitch PS, Reid BJ.

Evolution of neoplastic cell lineages in Barrett's esophagus. Nature Genetics. 1999 May; 22: 106-9.

Wong DJ, Foster SA, Galloway DA, Reid BJ.

Progressive region-specific de novo methylation of the p16 CpG island in primary human mammary epithelial cell strains during escape from M0 growth arrest. Mol Cell Biol. 1999 Aug; 19(8):5642-51.

Yee, KO and Stephen M. Schwartz.

Why atherosclerotic vessels narrow: The fibrin hypothesis. ISTH Congress State of the Art Book. Thrombosis and Haemostasis, 82(2): 762-771. 1999.

Yudkovsky, N.; Logie, C.; Hahn,S.; Perterson, C.L.(1999).

Recuitment of the SWI/SN chomatin remodeling complex by transcriptional activators. Genes Dev. 13, 2369-2374.

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1998

Alberolalla, J., Levin, S.D., Barton, Greg, Forbush, K., Zon, L.I. and Perlmutter, R.M.

1998. Analysis of the role of MKK-4/Sek-1 in T cell development and apoptosis. International Immunology 10:1077-1082.

Barton, Greg and Rudensky, A.Y.

1998. An altered invariant chain protein with an antigenic peptide in place of CLIP forms SDS-stable complexes with class II alphabeta dimers and facilitates highly efficient peptide loading. International Immunology 10:1159-1165.

Halleck MS, Pradhan D, Blackman C, Berkes C, Williamson P,

Multiple members of a third subfamily of P-type ATPases identified by genomic sequences and ESTs. Genome Res. 1998 Apr;8(4):354-61.

Bauer LA, Black DJ, Lill JS.

Vancomycin dosing in morbidly obese patients. Eur J Clin Pharmacol. 1998 Oct;54(8):621-5.

Frick PA, Black DJ, Duchin JS, Deliganis S, McKee WM, Fritsche TR.

Prevalence of antimicrobial drug-resistant Streptococcus pneumoniae in Washington State. West J Med. 1998 Dec;169(6):364-9.

Britton, Jessica S. and Edgar, Bruce A.

1998. Environmental control of the cell cycle in Drosophila: nutrition activates mitotic and endoreplicative cells by distinct mechanisms. Development 125:2149-2158.

Brown, Jeffrey D. and Moon, Randall T.

1998. Wnt signaling: why is everything so negative? Current Opinion in Cell Biology 10<:182-187.

Flory, M.R. and T.N. Davis. 1998.

Localization of Calmodulin in budding yeast and fission yeast using GFP. Meth Enzymol. 302 (ch.10):87-102.

Hoch, RV et al (1998)

Differential screening and suppression subtractive hybridization identified genes differentially expressed in an estrogen receptor-positive breast carcinoma cell line. Nucleic Acids Res. 26(4): 1116-1123.

Uittenbogaart, C.H., Law, Wendy, Leenen, P.J.M., Bristol, G., van Ewijk, W., and Hays, E.F.

1998. Thymic dendritic cells are primary targets for the oncogenic virus. Journal of Virology 72:10118-10125.

Costa, M., W. Raich, C. Agbunag, B. Leung, J. Hardin, and J. R. Priess (1998).

A Putative Catenin-Cadherin System Mediates Morphogenesis of the Caenorhabditis elegans Embryo. J. Cell Biol. 141: 297-308

Costa, M., Raich, W., Agbunag, C., Leung, Ben, Hardin, J. and Priess, J.R.

A Putative catenin-cadherin system mediates morphogenesis of the Caenorhabditis elegans Embryo. Journal of Cell Biology 141:297-308.

Rose TM, Schultz ER, Henikoff JG, Pietrokovski S, McCallum CM, Henikoff S.

Consensus-degenerate hybrid oligonucleotide primers for amplification of distantly related sequences. Nucleic Acids Res. 1998 Apr 1;26(7):1628-35.

Nguyen, Thu, Vinh, D.B.N., Crawford, D.K. and Davis, T.

1998. A gnetic analysis of interactions with Spc110p reveals distinct functions of Soc97p and Spc98p, components of the yeast gamma-tubulin complex. Molecular Biology of the Cell 9:2201-2216.

Fearnhead, HO, M.E McCurrach, Jason O'Neill, Zhang K, S.W. Lowe and Y.A. Lazebnikb.

1998. Oncogene-dependent apoptosis in extracts from drug-resistant cells. Genes and Development 11:1266-76.

Palanca-Wessels, MC, MT Barrett, PC Galipeau, KL Rohrer, BJ Reid, and PS Rabinovitch.

Genetic analysis of long-term Barrett's esophagus epithelial cultures exhibiting cytogenetic and ploidy abnormalities. Gastroenterology 114 :295-304.

Brott BK, Pinsky BA, Erikson RL.

Nlk is a murine protein kinase related to Erk/MAP kinases and localized in the nucleus. Proc Natl Acad Sci U S A. 1998 Feb 3;95(3):963-8.

Widrow, Robert, Hansen, R.S., Kawame, H., Gartler, S.M. and Laird, C.D.

1998. Very late DNA replication in the human cell cycle. Cell Biology 95:11246-11250.

Widrow, Robert, Rabinovitch, P.S., Cho, K. and Laird, C.D.

1998. Separation of cells at different times within G2 and mitosis by cyclin B1 flow cytometry. Cytometry 27:250-254.

McGraw, H.P., KRS; Wiley, JC; and Tublitz NJ.

Steriod-Regulated Morphological Plasticity in a Set of Identified Peptidergic Neurons in the Moth Manduca Sexta. Journal of Experimental Biology, 201, 2981-2992.(1998).

McGraw, Hillary F., Prier, Kevin R.S., Wiley, Jesse C. and Tublitz, Nathan J.

1998. Steriod-regulated Morphological Plasticity in a Set of Identified Peptidergic Neurons in the Moth Manduca Sexta, The Journal of Experimental Biology. 201:2981-2992.

Foster SA, Wong DJ, Barrett MT, Galloway DA.

Inactivation of p16 in human mammary epithelial cells by CpG island methylation. Mol Cell Biol. 1998 Apr; 18(4):1793-801.

Funk JO, Schiller PI, Barrett MT, Wong DJ, Kind P, Sander CA.

p16INK4a expression is frequently decreased and associated with 9p21 loss of heterozygosity in sporadic melanoma. J Cutan Path. 1998; 25:291-6.

Wong, David J., Barrett, Michael T., Stoger, R., Emond, M.J., and Reid, B.J.

1998. p16INK4a promoter is hypermethylated at a high frequency in esophageal adenocarcinomas. Cancer Research 57:2619-2622.

Korte-Sarfaty J, Pham VD, Yant S, Hirano A, Wong TC.

Expression of human complement regulatory protein CD46 restricts measles virus replication in mouse macrophages. Biochem Biophys Res Commun. 1998 Aug 19;249(2):432-7.

Yee, KO, Michael M. Rooney, Cecilia M. Giachelli, Susan T. Lord, and Stephen M. Schwartz.

1998.Role of B1 and B3 Integrins in Human Smooth Muscle Cell Adhesion to and Contraction of Fibrin Clots In Vitro. Circ. Res. 83 :241-245.

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1997

Moon, RT, Jeffrey D. Brown, Julia A. Yang-Snyder and Jeffery R. Miller,

1997. Structurally related receptors and antagonists compete for secreted Wnt ligands. Cell 88:725-728.

Moon, RT, Jeffrey D. Brown and Monica Torres,

1997. Wnts modulate cell fate and behavior during vertebrate development. Trends in Genetics 13:157-162

Dorer R, Boone C, Kimbrough T, Kim J, Hartwell LH.

Genetic analysis of default mating behavior in Saccharomyces cerevisiae. Genetics. 1997 May;146(1):39-55.

Cheung, R.S., et al (1997)

Mosaicism of FMR1gene expression in Fragile X fibroblasts in cell culture – DNA methylation analysis. Western Medical Student Research Committee and meeting of the Western Society of Pediatric Research. Carmel, CA

Moser MJ, Flory MR, Davis TN.

Calmodulin localizes to the spindle pole body of Schizosaccharomyces pombe and performs an essential function in chromosome segregation. J Cell Sci. 1997 Aug;110 ( Pt 15):1805-12.

Stewart L, Ireton GC, Champoux JJ.

Reconstitution of human topoisomerase I by fragment complementation. J Mol Biol. 1997 Jun 13;269(3):355-72.

Lotfi, K.; Sund, G.; Lowe, R.; Graham, J.; Landin-Olsson, M.; Kockum, I.; Deeb, S.; Lernmark, A.

The beta cell glucokinase promoter variant is an unlikely risk factor for diabetes mellitus. Diabetes Incidence Study in Sweden (DISS). Diabetologia, 1997. 40(8): p. 959-62.

Chackerian, B., E. M. Long, P. A. Luciw, and J. Overbaugh,

1997. Human Immunodeficiency Virus Type 1 Coreceptors Participate in Postentry Stages in the Virus Replication Cycle and Function in Simian Immunodeficiency Virus Infection. J. Virology 71:3932-3939

Fearnhead, HO, M.E McCurrach, Jason O'Neill, Zhang K, S.W. Lowe and Y.A. Lazebnikb.

Oncogene-dependent apoptosis in extracts from drug-resistant cells. Genes and Development 11:1266-76.

Kashanchi F., Araujo J., Doniger J., Muralidhar S., Hoch R., et al. (1997)

Human herpesvirus 6 (HHV-6) ORF-1 transactivating gene exhibits malignant transforming activity and its protein binds to p53. Oncogene 14(3): 359-367.

Ulis EE, Grosshans D, Ramos L, Reese DM, Slamon DJ, Calzone FJ.

Differential subcellular localization, expression and biological toxicity of BRCA1 and the splice variant BRCA1-delta11b. Oncogene. 1997 Jan 9;14(1):1-16.

Saltzman DA, Katsanis E, Heise CP, Hasz DE, Vigdorovich V, Kelly SM, Curtiss R 3rd, Leonard AS, Anderson PM.

Antitumor mechanisms of attenuated Salmonella typhimurium containing the gene for humaninterleukin-2: a novel antitumor agent? Pediatr Surg. 1997 Feb;32(2):301-6.

Wong, David J., Barrett, Michael T., Stoger, R., Emond, M.J., and Reid, B.J.

p16INK4a promoter is hypermethylated at a high frequency in esophageal adenocarcinomas. Cancer Research 57:2619-2622

Wong TC,Yant S, Harder BJ, Korte-Sarfaty J, Hirano A.

The cytoplasmic domains of complement regulatory protein CD46 interact with multiple kinases in macrophages. J Leukoc Biol. 1997 Dec;62(6):892-900.

Yant S, Hirano A, Wong TC.

Identification of a cytoplasmic Tyr-X-X-Leu motif essential for down regulation of the human cell receptor CD46 in persistent measles virus infection. J Virol. 1997 Jan;71(1):766-70.

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