1.   Lemmers, R.J.L.F., Tawil, R., Petek, L.M., Balog, J., Block, G.J., Santen, G.W.E., Amell, A.M., van der Vliet, P.J., Almomani, R., Straasheijm, K.R., Krom, Y.D., Klooster, R., Sun, Y., den Dunnen, J.T., Helmer, Q., Donlin-Smith, C.M., Padberg, G.W., van Engelen, B.G.M., de Greef, J.C., Aartsma-Rus, A.M., Frants, R.R., de Visser, M., Desnuelle, C., Sacconi, S., Filippova, G.N., Bakker, B., Bamshad, M.J., Tapscott, S.J., Miller, D.G., van der Maarel, S.M..  "Digenic inheritance of an SMCHD1 mutation and an FSHD-permissive D4Z4 allele causes facioscapulohumeral muscular dystrophy type 2", Nature Genetics;  44: p. 1370-1374, 2012.  Abstract  Full text  PDF  Supporting material

2.   van der Maarel S.M., Miller D.G., Tawil R., Filippova G.N., Tapscott S.J..  "Facioscapulohumeral muscular dystrophy: consequences of chromatin relaxation", Current Opinion in Neurology;  25: p. 614-620, 2012.  Abstract

3.   Lemmers R.J.L.F., Miller D.G., van der Maarel S.M..  "Facioscapulohumeral Muscular Dystrophy", GeneReviews at GeneTests;  Medical Genetics Information Resource: p. [database online], 2012.  Abstract  Full text

4.   Block G.J., Petek L.M., Narayanan D., Amell A.M., Moore J.M., Rabaia N.A., Tyler A., van der Maarel S.M., Tawil R., Filippova G.N., and Daniel G. Miller.  "Asymmetric Bidirectional Transcription from the FSHD-Causing D4Z4 Array Modulates DUX4 Production", PLoS ONE;  7: p. e35532, 2012.  Abstract  Full text  PDF  Supporting material

5.   Vêncio E.F., Nelson A.M., Cavanaugh C., Ware C.B., Milller D.G., Garcia J.C., Vêncio R.Z., Loprieno M.A., Liu A.Y..  "Reprogramming of prostate cancer-associated stromal cells to embryonic stem-like", Prostate;  72: p. 1453-1463, 2012.  Abstract  Full text  PDF

6.   van Rensburg R., Beyer I., Yao X.Y., Wang H., Denisenko O., Li Z.Y., Russell D.W., Miller D.G., Gregory P., Holmes M., Bomsztyk K., Lieber A..  "Chromatin structure of two genomic sites for targeted transgene integration in induced pluripotent stem cells and hematopoietic stem cells.", Gene Ther;  Online Publication: p. , 2012.  Abstract  Full text  PDF

7.   Balog J., Miller D.G., Sanchez-Curtailles E., Carbo-Marques J., Block G., Potman M., de Knijff P., Lemmers R.J., Tapscott S.J., van der Maarel S.M. .  "Epigenetic regulation of the X-chromosomal macrosatellite repeat encoding for the cancer/testis gene CT47", Eur. J. Hum. Genet.;  20: p. 185-191, 2011.  Abstract  Full text  PDF  Supporting material

8.   Daniel G. Miller.  "AAV-mediated Gene Targeting", Methods in Molecular Biology, Adeno-Associated Virus;  807: p. 301-315, 2011.  Abstract  PDF

9.   Petek L.M., Russell D.W., Miller D.G..  "Frequent Endonuclease Cleavage at Off-target Locations In Vivo", Molecular Therapy;  18: p. 983-986, 2010.  Abstract  Full text  PDF

10.   Stadler B.M., Ivanovska I., Mehta K., Song S., Nelson A., Tan Y., Mathieu J., Darby G.C., Blau C.A., Ware C., Peters G., Miller D.G., Shen L., Cleary M., Ruohola-Baker H..  "Characterization of microRNAs Involved in Embryonic Stem Cell States.", Stem Cells and Development;  19: p. 935-950, 2010.  Abstract  PDF  Supporting material

11.   Petek L.M., Fleckman P., Miller D.G..  "Efficient KRT14 Targeting and Functional Characterization of Transplanted Human Keratinocytes for the Treatment of Epidermolysis Bullosa Simplex.", Molecular Therapy;  18: p. 1624-1632, 2010.  Abstract  Full text  PDF  Supporting material

12.   Snider L., Geng L.N., Lemmers R.J.L.F., Kyba M., Ware C.B., Nelson A.M., Tawil R., Filippova G.N., van der Maarel S.M., Tapscott S.J., Miller D.G..  "Facioscapulohumeral Dystrophy: Incomplete Suppression of a Retrotransposed Gene", Plos Genetics;  6: p. e1001181, 2010.  Abstract  Full text  PDF

(See also the perspective by Christopher E. Pearson). "FSHD: A Repeat Contraction Disease Finally Ready to Expand (Our Understanding of Its Pathogenesis)", PLOS Genetics; 6: p.e1001180, 2010 Full text PDF

13.   Lemmers R.J.L.F., van der Fliet P.J., Klooster R., Sacconi S., Camano P., Dauwerse J.G., Snider L., Straasheijm K.R., Jan van Ommen G., Padberg G.W., Miller D.G., Tapscott S.J., Tawil R., Frants R.R., van der Maarel S.M..  "A Unifying Genetic Model for Facioscapulohumeral Muscular Dystrophy", Science;  329: p. 1650-1653, 2010.  Abstract  Full text  PDF  Supporting material

(See also the perspective by Mani S. Mahadevan). "Exposing the DUX Tale", Science; 329: p.1607-1608, 2010 PDF

14.   Snider L., Asawachaicharn A., Tyler A.E., Geng L.N., Petek L.M., Maves L., Miller D.G., Lemmers R.J.L.F., Winokur S.T., Tawil R., van der Maarel S.M., Filippova G.N., Tapscott S.J..  "RNA Transcripts, miRNA-sized fragments and proteins produced from D4Z4 units: new candidates for the pathophysiology of facioscapulohumeral dystrophy.", Human Molecular Genetics;  18: p. 2414-2430, 2008.  Abstract  Full text  PDF  Supporting material

15.   Beard B.C., Keyser K.A., Trobridge G.D., Peterson L.J., Miller D.G., Jacobs M., Kaul R., Kiem H. .  "Unique Integration Profiles in a Canine Model of Long-Term Repopulating Cells Transduced with Gammaretrovirus, Lentivirus, or Foamy Virus", Human Gene Therapy;  18: p. 423-434, 2007.  Abstract  PDF

16.   Donsante A., Miller D.G., Li Y., Vogler C., Brunt E.M., Russell D.W., Sands M.S..  "AAV Vector Integration Sites in Mouse Hepatocellular Carcinoma", Science;  317: p. 477, 2007.  Abstract  PDF  Supporting material

Miller and Donsante listed as equal contribution.

17.   Beard B.C., Dickerson D., Beebe K., Gooch C., Fletcher J., Okbinoglu T., Miller D.G., Jacobs M.A., Kaul R., Kiem H., Trobridge G.D..  "Comparison of HIV-derived Lentiviral and MLV-based Gammaretroviral Vector Integration Sites in Primate Repopulating Cells", Molecular Therapy;  15: p. 1356-1365, 2007.  Abstract  Full text  PDF  Supporting material

18.   Aker M., Tubb J., Miller D.G., Stamatoyannopoulos G., Emery D.W..  "Integration Bias of Gammaretrovirus Vectors following Transduction and Growth of Primary Mouse Hematopoietic Progenitor Cells with and without Selection", Molecular Therapy;  14: p. 226-235, 2006.  Abstract  Full text  PDF  Supporting material

19.   Trobridge G.D., Miller D.G., Jacobs M.A., Allen J.M., Kiem H., Kaul R., Russell D.W..  "Foamy virus vector integration sites in normal human cells", Proceedings of the National Academy of Sciences;  103: p. 1498-1503, 2006.  Abstract  Full text  PDF  Supporting material

20.   Miller, D.G., Wang, P., Petek, L.M., Hirata, R.K., Sands, M.S., Russell, D.W. .  "Gene targeting in vivo by adeno-associated virus vectors", Nature Biotechnology;  24: p. 1022-1026, 2006.  Abstract  Full text  PDF  Supporting material

(See also Commentary by John F. Engelhardt), "AAV hits the genomic bulls eye", Nature Biotechnology; 24: p.949-950, 2006. Full text pdf

21.   Miller D.G., Trobridge G.D., Petek L.M., Jacobs M.A., Kaul R., Russell D.W..  "Large-Scale Analysis of Adeno-Associated Virus Vector Integration Sites in Normal Human Cells", Journal of Virology;  79: p. 11434-11442, 2005.  Abstract  Full text  PDF  Supporting material

22.   Miller D.G., Petek L.M., Russell D.W..  "Adeno-associated virus vectors integrate at chromosome breakage sites", Nature Genetics;  36: p. 767-773, 2004.  Abstract  Full text  PDF

23.   Gregorevic P., Blankinship M.J., Allen J.M., Crawford R.W., Meuse L., Miller D.G., Russell D.W., Chamberlain J.S. .  "Systemic delivery of genes to striated muscles using adeno-associated viral vectors", Nature Medicine;  10: p. 828-834, 2004.  Abstract  Full text  PDF  Supporting material

24.   Hirata R.K., Xu C., Dong R., Miller D.G., Russell D.W..  "Efficient PRNP Gene Targeting in Bovine Embryo Fibroblasts by Adeno-Associated Virus Vectors.", Cloning and Stem Cells;  6: p. 31-36, 2004.  Abstract  PDF

25.   Miller D.G., Petek L.M., Russell D.W..  "Human Gene Targeting by Adeno-Associated Virus Vectors Is Enhanced by DNA Double-Strand Breaks", Molecular and Cellular Biology;  23: p. 3550-3557, 2003.  Abstract  Full text  PDF

26.   Miller D.G., Rutledge E.A., Russell D.W..  "Chromosomal effects of adeno-associated virus vector integration", Nature Genetics;  30: p. 147-148, 2002.  Abstract  PDF

27.   Miller D.G., and Stamatoyannopoulos G..  "Gene Therapy for Hemophilia", New England Journal of Medicine;  344: p. 1782-1784, 2001.  Abstract  Full text

28.   Miller D.G..  "Clinical Genetics in an Age of Molecular Diagnosis", Archives of Pediatrics and Adolescent Medicine;  156: p. 411, 2001.  Abstract  Full text  PDF

29.   Miller D.G., Miller A.D..  "A Family of Retroviruses That Utilize Related Phosphate Transporters for Cell Entry", Journal of Virology;  68: p. 8270-8276, 1994.  Abstract  PDF

30.   Miller D.G., Edwards R.H., Miller A.D..  "Cloning of the cellular receptor for amphotropic murine retroviruses reveals homology to that for gibbon ape leukemia virus", Proceedings of the National Academy of Sciences;  91: p. 78-82, 1994.  Abstract  PDF

31.   Clowes M.M., Lynch C.M., Miller A.D., Miller D.G., Osborne W.R.A., Clowes A. W..  "Long-Term Biological Response of Injured Rat Carotid Artery Seeded with Smooth Muscle Cells Expressing Retrovirally Introduced Human Genes", Journal of Clinical Investigation;  93: p. 644-651, 1994.  Abstract  Full text  PDF

32.   Kavanaugh M.P., Miller D.G., Zhang W., Law W., Kozak S.L., Kabat D., Miller A.D..  "Cell-surface receptors for gibbon ape leukemia virus and amphotropic murine retrovirus are inducible sodium-dependent phosphate symporters", Proceedings of the National Academy of Sciences;  91: p. 7071-7975, 1994.  Abstract  Full text  PDF

33.   Miller D.G., Miller A.D. .  "Inhibitors of Retrovirus Infection Are Secreted by Several Hamster Cell Lines and Are Also Present in Hamster Sera", Journal of Virology;  67: p. 5346-5352, 1993.  Abstract  PDF

34.   Miller A. D., Miller D. G., Garcia J. V. and C. M. Lynch..  "Use of retroviral vectors for gene transfer and expression.", Methods in Enzymology;  217: p. 581-599, 1993.  

35.   Miller D.G., Miller A.D..  "Tunicamycin Treatment of CHO Cells Abrogates Multiple Blocks to Retrovirus Infection, One of Which Is Due to a Secreted Inhibitor", Journal of Virology;  66: p. 78-74, 1992.  Abstract  PDF

36.   Miller D.G., Adam M.A., Miller A.D..  "Gene Transfer by Retrovirus Vectors Occurs Only in Cells That Are Actively Replicating at the Time of Infection", Molecular and Cellular Biology;  10: p. 4239-4242, 1990.  Abstract  Full text  PDF