MR Research Lab: Publications

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2004 Publications
  1. Bowen, BC, Pattany PM, Saraf-Lavi E, Maravilla, KR. The brachial plexus: Normal Anatomy, Pathology, and MR Imaging. Neuroimaging Clin N Am. 2004 Feb;14(1):vii, 59-85.
  2. Grant GA, Goodkin R, Maravilla, KR, Kliot M. MR neurography: diagnostic utility in the surgical treatment of peripheral nerve disorders. Neuroimaging Clin N Am. 2004 Feb;14(1):viii, 115-133.
  3. Grant GA, Britz GW, Goodkin R, Jarvik JG, Maravilla KR, Kliot M. Magnetic Resonance Imaging for Peripheral Nerve Disorders In: Youmans Neurological Surgery. Winn HR (ed). Saunders, Philadelphia, PA, 2004.
  4. Rowan, M., Parow, A., Stoll, A.L., Demopoulos, C., Friedman, S.D., Dager, S.R., Cohen, B.M., Renshaw, P.F.: Low Field TMS Treatment for Bipolar Depression using a MRI Based Stimulator. American Journal of Psychiatry 161: 93-98, 2004.
  5. Lyoo, I.K., Kim, J.M., Stoll, A.L., Demopoulos, C., Parow, A., Dager, S.R., Friedman, S.D., Dunner, D.L., Renshaw, P.F. Frontal lobe gray matter density decreases in bipolar disorder. Biological Psychiatry 55(6). 648-651, 2004.
  6. Dager S.R., Friedman, S.D., Parow, A., Demopoulos, C., Stoll, A,L., Lyoo, I.K., Dunner, D.L., Renshaw, P.F. Brain Metabolic Alterations in Medication-Free Bipolar Patients. Archives of General Psychiatry.(in press 2004).
  7. Nandy R and Cordes D. Improving the Spatial Specificity of Canonical Correlation Analysis in fMRI. Magn Reson Med 52:947-952 (2004).
  8. Nandy R and Cordes D. New Approaches to Receiver Operator Characteristic Methods in Functional Magnetic Resonance Imaging with Real Data using Repeated Trials. Magn. Reson. Med. 52:1424-1431 (2004).
  9. V. Haughton, C. Moritz, M. Meyerand, K. Arfanakis, D. Cordes. Chapter 5, Mapping Brain Function with MRI. Latchaw/Kucharczyk/Moseley. Diagnostic and Therapeutic Imaging of the Nervous System. Elsevier (2004).

  1. R. Nandy and D. Cordes. ROC methods in fMRI with real data using repeated trials: Limitations and Improvements. ISMRM 490 (2004).
  2. L. Stanberry, T. Richards, V. Berninger, R. Nandy, D. Cordes. Comparing functional connectivity in normal and dyslexic readers with cluster analysis using a continuous phonological task. ISMRM 392 (2004).
  3. R. Nandy and D. Cordes. Solving the multiple comparisons problem in fMRI using a method based on bootstrapping the Order Statistics of the resting-state data. ISMRM 1089 (2004).
  4. R. Nandy and D. Cordes. Analysis of the spatial specificity of canonical correlation analysis in fMRI. ISMRM 1103 (2004).
  5. R. Nandy, Y. Gel, D. Cordes. Modeling of the spatial covariance structure of the brain using variograms with a non-Euclidean metric. ISMRM 1097 (2004).
  6. L. Stanberry, B. Keogh, K. Maravilla, R. Nandy, D. Cordes. Investigating Drug-induced Seizures in Rats using BOLD-fMRI and Cluster Analysis. ISMRM 1090 (2004).
  7. D. Cordes and R. Nandy. Investing the reliability of ICA sources obtained after PCA preprocessing. ISMRM 1086 (2004).
  8. Y. Gel, R. Nandy, D. Cordes. Spatial Analysis of structural MR data using a geostatistical method: Empirical Variogram Approach. ISMRM 1098 (2004).

2003 Publications
    Journal publications
  1. Kenneth R. Maravilla, Yunyu Cao, Julia R. Heiman, Patricia A. Garland, Barry T. Perterson, Wayne O. Carter and Robert M. Weisskoff, Serial MR Imaging with MS-325 for Evaluating Female Sexual Arousal Response: Determination of Intrasubject Reproducibility, Journal of Magnetic Resonance Imaging, 2003 , Volume: 18, Pages: 216-224
  2. Kenneth R. Maravilla, Julia R. Heiman, Patricia A. Garland, Yunyu Cao, Wayne O. Carter, Barry T. Perterson and Robert M. Weisskoff, Dynamic MR imaging of the sexual arousal response in women. Journal of Sex & Marital Therapy, 2003, Volume:29, Pages: 71-76
  3. Suh DD, Yang CC, Cao Y, Garland PA, Maravilla KR. Magnetic resonance imaging anatomy of the female genitalia in premenopausal and postmenopausal women. Journal of Urology. 2003 Jul;170(1):138-44.
  4. Suh DD, Yang CC, Cao Y, Garland PA, Maravilla KR. MRI of female pelvic and genital organs during sexual arousal. Journal of Psychosomatic Obstetrics and Gynecology, in press
  5. R. Nandy and D. Cordes. Novel ROC-type Method for Testing the Efficiency of Multivariate Statistical Methods in fMRI. Magn. Reson. Med. 49:1152-1162 (2003).
  6. R. Nandy and D. Cordes. A Novel Nonparametric Approach to Canonical Correlation Analysis with Applications to Low CNR Functional MRI Data. Magn. Reson. Med. 50:354-365 (2003).
  7. L. Stanberry, R. Nandy, D. Cordes. Cluster analysis of fMRI data using dendrogram sharpening. Hum Brain Mapp 20:201-219(2003).
  8. Yarnykh VL, Yuan C. Multislice double inversion-recovery black-blood imaging with simultaneous slice reinversion. J Magn Reson Imaging 2003; 17(4): 478-483.
  9. Friedman, S.D., Shaw, D.W.W., Artru, A.A., Richards, T.L., Gardner, J., Dawson, G., Posse, S., Dager, S.R: Regional brain chemical alterations in young children with autism spectrum disorder. Neurology 60:100-107, 2003.
    Conference proceedings
  1. D.Cordes, R.Nandy. Investigating the frequency dependence of the spatial gradient artifacts for resting-state data. Proceedings ISMRM(2003)
  2. D.Cordes, R. Nandy. Wavelet analysis of clusters to characterize the time-frequency dependence of the correlation coefficient. Proceedings ISMRM (2003).
  3. R. Nandy, L. Stanberry, D. Cordes. A novel nonparametric estimation of p-values in fMRI using resting state data. ISMRM (2003).
  4. R. Nandy, Y. Gel, D. Cordes. A geostatistical approach to the modeling of the spatial structure of the brain. ISMRM (2003).
  5. R. Nandy, D. Cordes. Canonical correlation analysis and a novel assignment scheme for fMRI activation. ISMRM (2003).
  6. R. Nandy, D. Cordes. A novel ROC type method based on real (non-simulated) fMRI data. ISMRM (2003).
  7. R. Nandy, D. Cordes. Solving the multiple comparison problem in fMRI with a novel nonparametric approach using bootstrap in autoregression. ISMRM (2003).
  8. R. Nandy, L. Stanberry, D. Cordes. An fMRI approach to the diagnosis of dyslexia using CCA and phoneme matching task. HBM (2003).

  1. Kenneth Maravilla, Yunyu Cao, Elizabeth Aylward, Patty Garland, Dietmar Cordes, Julia Heiman, Barry Peterson, Wayne Carter, "Cerebral BOLD fMRI Activation Patterns Associated with Sexual Arousal Response in Normal Women", poster presentation, Human Brain Mapping, 2002
  2. Deliganis AV, Maravilla KR, Heiman JR, Carter WO, Garland PA, Peterson BT, Hackbert L, Cao Y, Weisskoff RM. Female genitalia: dynamic MR imaging with use of MS-325 initial experiences evaluating female sexual response. Radiology. 2002 Dec;225(3):791-799.
  3. D. Cordes, V. Haughton, J. Carew, K. Arfanakis, K. Maravilla. Hierarchical Clustering to Measure Connectivity in fMRI Resting-State Data. Magn Res Imaging 20:305-317 (2002).
  4. K. Arfanakis, D. Cordes, V. Haughton, J. Carew, M. Meyerand. Independent Component Analysis applied to Diffusion Tensor MRI. Magn. Reson. Med. 47:354-363 (2002).
  5. M. Quigley, V. Haughton, John Carew, D. Cordes, C. Moritz, M. Meyerand. A Comparison of Independent Component Analysis and Conventional Hypothesis-Driven Analysis Clinical Functional MR Image Processing. Am J Neuroradiol. AJNR 23:49-58 (2002).
  6. G. Nybakken, M. Quigley, C. Moritz , D. Cordes, V. Haughton, M. Meyerand. Test-retest precision of functional magnetic resonance imaging processed with independent component analysis. Neuroradiology 44(5):403-406 (2002).
  7. T. J. Carroll, V.M. Haughton, H. Rowley, D. Cordes. The confounding effect of large vessels on MR perfusion images analyzed with Independent Component Analysis (ICA). Am J Neuroradiol. AJNR 23:1007-1012 (2002).
  8. Yarnykh VL, Yuan C. T1-Insensitive flow suppression using quadruple inversion-recovery. Magn Reson Med 2002; 48(5): 899-905.
  9. Yarnykh VL. Pulsed Z-spectroscopic imaging of cross-relaxation parameters in tissues for human MRI: theory and clinical applications. Magn Reson Med 47(5): 929-939 (2002).
  10. Sparks, B.F., Friedman, S.D., Shaw, D.W., Aylward, E.H., Echelard, D., Artru, A.A., Maravilla, K.R., Giedd, J.N., Munson, J., Dawson, G., Dager, S.R.: Brain structural abnormalities in young children with autism spectrum disorder. Neurology 59:184-192, 2002.
  11. Dawson, G., Webb, S., Schellenberg G., Dager, S.R., Friedman, S.D., Aylward, E., Richards, T.R.: Defining the broader phenotype of autism: Genetic, brain, and behavioral perspectives. Development & Psychopathology 14:581-611, 2002.
    Conference Proceeding
  1. C. Green, R. Nandy, D. Cordes. PCA-Preprocessing of fMRI Data Adversely Affects the Results of ICA. Proceedings ISMRM (2002).
  2. R. Nandy, C. Green, D. Cordes. Hippocampal Activation during Memory Related Tasks and Canonical Correlation Analysis. Proceedings ISMRM (2002).
  3. R. Nandy, C. Green, D. Cordes. Canonical Correlation Analysis and Modified ROC Methods for fMRI Techniques. Proceedings ISMRM (2002).
  4. R. Nandy, C. Green, D. Cordes. Non-parametric Analysis of fMRI data using Bootstrap in Autoregression. Proceedings ISMRM (2002).
  5. D. Cordes, V. Haughton, J. Carew, K. Arfanakis, K. Maravilla. Hierarchical Clustering to Measure Connectivity in fMRI Resting-State Data. Proceedings ISMRM (2002).


  1. Yuan C, Mitsumori LM, Beach KW, Maravilla KR.Carotid atherosclerotic plaque: noninvasive MR characterization and identification of vulnerable lesions. Radiology. 2001 Nov;221(2):285-99. Review.
  2. D.Cordes, K. Arfanakis, J. Carew, V. Haughton. Frequencies Contributing to Functional Connectivity in the Cerebral Cortex in 'Resting-State' Data. Am J Neuroradiol. AJNR 22:1326-1333 (2001).

  3. M. Quigley, D. Cordes, G. Wendt, P. Turski, C. Moritz, V. Haughton, M. Meyerand. Effect of Focal and Non-Focal Cerebral Lesions on Functional Connectivity Studied with MR Imaging. Am J Neuroradiol 22:294-300 (2001).

  4. Brooks, W.M., Friedman, S.D., & Gasparovic, C.: Magnetic resonance spectroscopy in traumatic brain injury. J Head Trauma Rehabil. 2001 Apr;16(2):149-64. Review.
  5. Layton, M.E., Friedman, S.D., Dager, S.R., Posse, S.: Brain metabolic changes in lactate-induced panic before and after gabapentin treatment. Depression & Anxiety 14: 251-254, 2001
    Conference Proceeding
  1. D. Cordes, K. Arfanakis, J. Carew, V. Haughton. Frequencies Contributing to Functional Connectivity in the Cerebral Cortex in “Resting-State” Data. Proceedings ISMRM, 31 (2001).
  2. D. Cordes. Decomposition of Cross Correlation Maps into Frequency Components to Measure Functional Connectivity in the Cerebral Cortex in “Resting-State” Data. Neuroimage Volume 13, S99, 2001.
  3. K. Arfanakis, D. Cordes, V. Haughton, J. Carew, M. Meyerand. Independent Component Analysis (ICA) Applied to Diffusion Tensor MRI. Proceedings ISMRM, 1536 (2001).
  4. K. Arfanakis, D. Cordes, V. Haughton, M. Meyerand. Estimation of the Physiological to System Noise Ratio in the Human Brain. Proceedings ISMRM, 1205 (2001).


  1. D. Cordes, V. Haughton, K. Arfanakis, G. Wendt, P. Turski, C. Moritz, M. Quigley, M. Meyerand. Mapping Functional Related Regions of Brain with Functional Connectivity MRI. Am J Neuroradiol 21:1636-1644 (2000).
  2. D. Cordes, P. A. Turski, J. A. Sorenson. Compensation of Susceptibility-Induced Signal Loss in Echoplanar Imaging for Functional Applications. Magn Res Imaging 18:1055-1068 (2000).
  3. T. Stein, C. Moritz, M. Quigley, D. Cordes, V. Haughton, E. Meyerand. Functional Connectivity in the Thalamus and Hippocampus studied with fMRI. Am J Neuroradiol 21:1397-1401 (2000).
  4. C. Moritz, V. Haughton, D. Cordes, M. Quigley, M. Meyerand. Whole-Brain functional MR Imaging Activation from a Finger-Tapping task Examined with Independent Component Analysis. Am J Neuroradiol 21:1629-1635 (2000).
  5. Aylward, E.H, Codori, A.M., Rosenblatt, A., Sherr, M., Brandt, J., Stine, O.C., Barta, P.E., Pearlson, G.D., Ross, C.A. Rate of caudate atrophy in presymptomatic and symptomatic stages of Huntington's disease. Movement Disorders, 2000; 15: 552-560.
  6. Rabins P.V., Aylward, E., Holroyd, S., Pearlson, G. MRI findings differentiate between late-onset schizophrenia and late-life mood disorder. International Journal of Geriatric Psychiatry, 2000;15:954-60.
  7. Schretlen, D., Pearlson, G.D., Anthony, J., Aylward, E.H., Augustine, A.M., Davis, A., Barta, P. Elucidating the contributions of processing speed, executive ability, and frontal lobe volume to normal age-related differences in fluid intelligence. Journal of the International Neuropsycholical Society, 2000; 6: 52-61.
  8. Frederikse, M., Lu, A., Aylward, E., Barta, P., Sharma, T., Pearlson, G. Sex differences in inferior parietal lobule volume in schizophrenia. American Journal of Psychiatry, 2000; 3: 422-427.
  9. Friedman S.D., Dager S.R., Richards T.L., Petropoulos H., Posse S.: Dynamic Brain Metabolism Quantified By Internal Water Reference: A Feasibility Study. Psychiatry Research/ Neuroimaging 98(1):55-66, 2000.
  10. Brooks, W.M., Stidley, C.A., Petropoulos, H., Jung, R.E., Weers, D., Friedman, S.D., Barlow, M., Sibbitt, W.L., Yeo, R.A.: Metabolic and cognitive response to human traumatic brain injury: A quantitative proton magnetic resonance study. Journal of Neurotrauma 2:629-640, 2000.
  11. Dager, S.R., & Friedman, S.D.: Brain imaging and the effects of caffeine and nicotine on metabolic mechanisms. Ann Med, 32: 589-596, 2000.
    Conference Proceeding
  1. D. Cordes, K. Arfanakis, V. Haughton, M. E. Meyerand. Geometrical Distortion Correction in EPI using Two Images with Orthogonal Phase-Encoding Directions. Proceedings ISMRM, 1712 (2000).
  2. M. Quigley, V. Haughton, D. Cordes, G. J. Wendt, P. A. Turski, C. H. Moritz, K. Arfanakis, M. E. Meyerand. A Comparison of Clinical Functional Magnetic Resonance Images Processed with Independent Component Analysis and Student-t Analysis. Proceedings ISMRM, 809 (2000).
  3. K. Arfanakis, D. Cordes, V. Haughton, M. Meyerand. Effects of Task Related Activation on Functional Connectivity. ASNR Convention, Atlanta, 2000.
  4. K. Arfanakis, D. Cordes, V. Haughton, P. A. Turski, M.E. Meyerand. A Birdcage Head Coil Optimized for Functional MRI. ASNR Convention, Atlanta, 2000.
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Last Modified: Wednesday, 19-Dec-2007 14:13:40 PST