Pharmacology
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Karol Bomsztyk, M.D.,
Professor, Medicine


Publications

Email: karolb@uw.edu
Box 358050
850 Republican Street, Room 243

Office: 206.616.7949
Lab: 206.543.1014
Fax: 206.616.8591
 

 

 

 

 

 

 

Linking Signal Transduction to Gene Expression

The broad objective of our research is to explore the molecular links that exist between signal transduction pathways and events that compose inducible gene expression.

In the nucleus, gene expression is composed of coordinated chromatin, transcription, RNA processing and transport events. Messenger RNA (mRNA) is synthesized from the DNA template by RNA polymerase II. When chromatin is in the open or permissive state, gene transcription is started by the recruitment of RNA polymerase II to the gene promoter by the transcription initiation complex. Figure This process, which involves transcriptional activators, general transcription factors, co-activators and other proteins, is highly regulated and responsive to extracellular signals delivered by kinase cascades and other pathways.

It is becoming increasingly apparent that altered chromatin and transcriptional events contribute to diseases such as cancer. We are developing advanced biotechnologies and computational tools to define how chromatin dynamics and transcriptional processes are regulated by extracellular signals. It is anticipated that comprehensive analysis of the interactions between inducible kinases with chromatin and transcription factors could be used to develop model systems to better understand and treat cancer, diabetes and other diseases with the hallmark of abnormal cell proliferation



Recent Publications 

Chromatin structure of two genomic sites for targeted transgene integration in induced pluripotent stem cells and hematopoietic stem cells. - ABSTRACT

Microplate-based platform for combined chromatin and DNA methylation immunoprecipitation assays. - ABSTRACT

Allele-specific transcriptional elongation regulates monoallelic expression of the IGF2BP1 gene. - ABSTRACT

Direct recruitment of ERK cascade components to inducible genes is regulated by heterogeneous nuclear ribonucleoprotein (hnRNP) K. - ABSTRACT

Profiling RNA polymerase II using the fast chromatin immunoprecipitation method. - ABSTRACT

View all recent publications