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Contents

Journal Articles

20 Nov 2013

Title Authors Journal Attention


Synaptic Plasticity in Neural Networks Needs Homeostasis with a Fast Rate Detector Friedemann Zenke, Guillaume Hennequin, Wulfram Gerstner PLoS CB Yoni, Alex, Tim, others (?)


A Complex-Valued Firing-Rate Model That Approximates the Dynamics of Spiking Networks Shaffer, Ostojic, Abbott PLoS CB Guillaume, Kam, others (?)
Cellular Adaptation Facilitates Sparse and Reliable Coding in Sensory Pathways Farzad Farkhooi, Anja Froese, Eilif Muller, Randolf Menzel, Martin P. Nawrot PLoS CB Ali, Braden, Joel, Yu, Alex
Dynamical Adaptation in Photoreceptors Clark, Benichou, Meister, da Silveira PLoS CB Ali, Braden, Joel, Yu (?), Alex
Distal connectivity causes summation and division across mouse visual cortex Tatsuo K Sato, Michael Häusser & Matteo Carandini Nature Neuro Alex, Joel
Predictive Coding of Dynamical Variables in Balanced Spiking Networks Boerlin, Machens, Deneve PLoS CB All or most, esp. Mike S




19 Nov 2013

Title Authors Journal Attention
Do Finite-Size Lyapunov Exponents Detect Coherent Structures? Daniel Karrasch, George Haller ArXiv Guillaume, Eric
Analog and digital codes in the brain Yasuhiro Mochizuk, Shigeru Shinomoto ArXiv ALL
Linear stability of pulse-coupled neurons Simona Olmi, Antonio Politi, Alessandro Torcini ArXiv


When and Why Noise Correlations Are Important in Neural Decoding Eyherabide HG, Samengo I J Neurosci ALL


Generalized activity equations for spiking neural network dynamics Michael A. Buice1 and Carson C. Chow2* Frontiers Comp Neuro


A unified view on weakly correlated recurrent networks Dmytro Grytskyy1*, Tom Tetzlaff1, Markus Diesmann1,2 and Moritz Helias1 Frontiers Comp Neuro


An exploration of graph metric reproducibility in complex brain networks Qawi K. Telesford1*, Jonathan H. Burdette2 and Paul J. Laurienti2 Frontiers Comp Neuro


Propagating synchrony in feed-forward networks Sven Jahnke1,2,3*, Raoul-Martin Memmesheimer4 and Marc Timme1,2,3 Frontiers Comp Neuro


Defining nodes in complex brain networks Matthew L. Stanley1*, Malaak N. Moussa1, Brielle Paolini1, Robert G. Lyday1, Jonathan H. Burdette1* and Paul J. Laurienti1 Frontiers Comp Neuro


Multiscale codes in the nervous system: The problem of noise correlations and the ambiguity of periodic scales Alexander Mathis*, Andreas V. M. Herz, and Martin B. Stemmler PRE



Complete Classification of the Macroscopic Behavior of a Heterogeneous Network of Theta Neurons Tanushree B. Luke, Ernest Barreto, Paul So Neuro Comp
What Is the Limit of Redundancy Reduction with Divisive Normalization? Fabian H. Sinz, Matthias Bethge Neuro Comp
Scaling Laws of Associative Memory Retrieval Sandro Romani, Itai Pinkoviezky, Alon Rubin, Misha Tsodyks Neuro Comp
A Biological Gradient Descent for Prediction Through a Combination of STDP and Homeostatic Plasticity Mathieu N. Galtier, Gilles Wainrib Neuro Comp
Constructing Noise-Invariant Representations of Sound in the Auditory Pathway Neil C. Rabinowitz, Ben D. B. Willmore, Andrew J. King, Jan W. H. Schnupp PLoS Biol
High-throughput imaging of neuronal activity in Caenorhabditis elegans Johannes Larsch, Donovan Ventimiglia, Cornelia I. Bargmann, and Dirk R. Albrecht PNAS
A universal strategy for visually guided landing Emily Baird, Norbert Boeddeker, Michael R. Ibbotson, and Mandyam V. Srinivasan PNAS
Spike timing-dependent selective strengthening of single climbing fibre inputs to Purkinje cells during cerebellar development Yoshinobu Kawamura, Hisako Nakayama, Kouichi Hashimoto, Kenji Sakimura, Kazuo Kitamura & Masanobu Kano Nature Communications (open access)
File:Ncomms3698 predictive codes of familiarity and context Apps Tsakiris.pdf - "Predictive codes of familiarity and context during

the perceptual learning of facial identities" (File:Ncomms3698 predictive codes of familiarity and context Apps Tsakiris SI.pdf - SI)

Matthew A.J. Apps & Manos Tsakiris Nature Communications
File:Ncomms3733 Stratonovich to Ito transition in noisy systems.pdf - "Stratonovich-to-Itoˆ transition in noisy systems

with multiplicative feedback" (File:Ncomms3733 Stratonovich to Ito transition in noisy systems SI.pdf - SI)

Giuseppe Pesce, Austin McDaniel, Scott Hottovy, Jan Wehr & Giovanni Volpe Nature Communications Anyone doing Stochastic DEs


8 Oct 2013

Title Authors Journal Attention


Eigenvalue Spectra of Modular Networks Tiago P. Peixoto PRL



Forebrain Engraftment by Human Glial Progenitor Cells Enhances Synaptic Plasticity and Learning in Adult Mice X. Han, ..., S. Goldman, M. Nedergaard Cell Stem Cell
Neuroscience: Map the other brain R. Douglas Fields Nature ALL
Dynamic Tuning of Electrical and Chemical Synaptic Transmission in a Network of Motion Coding Retinal Neurons Trenholm, McLaughlin, Schwab, & Awatramani J Neurosci Joel
Effects of Cellular Homeostatic Intrinsic Plasticity on Dynamical and Computational Properties of Biological Recurrent Neural Networks Naude, Cessac, Berry, & Delord J Neurosci
A Predictive Network Model of Cerebral Cortical Connectivity Based on a Distance Rule Ercsey-Ravasz, Markov, Lamy, Van Essen, Knoblauch, Toroczkai, & Kennedy Neuron Yu
The First Stage of Cardinal Direction Selectivity Is Localized to the Dendrites of Retinal Ganglion Cells Yonehara, Farrow, Ghanem, ... Roska Neuron Joel


Synaptic Input Correlations Leading to Membrane Potential Decorrelation of Spontaneous Activity in Cortex Graupner & Reyes J Neurosci
Informational Basis of Sensory Adaptation: Entropy and Single-Spike Efficiency in Rat Barrel Cortex Adibi, Clifford, & Arabzadeh J Neurosci
Interacting Linear and Nonlinear Characteristics Produce Population Coding Asymmetries between ON and OFF Cells in the Retina Nichols, Nirenberg, & Victor J Neurosci Ali, Braden

13 Aug 2013

Title Authors Journal Attention


The importance of mixed selectivity in complex cognitive tasks Mattia Rigotti, Omri Barak, Melissa R. Warden, Xiao-Jing Wang, Nathaniel D. Daw, Earl K. Miller & Stefano Fusi Nature


Structural and molecular interrogation of intact biological systems Kwanghun Chung et al Nature


The correlation structure of local cortical networks intrinsically results from recurrent dynamics Moritz Helias, Tom Tetzlaff, Markus Diesmann Arxiv


Motifs in triadic random graphs based on Steiner triple systems Marco Winkler* and Jörg Reichardt† PRE



Creating a False Memory in the Hippocampus Steve Ramirez,...,Susumu Tonegawa Science


Opening the Black Box: Low-Dimensional Dynamics in High-Dimensional Recurrent Neural Networks David Sussillo, Omri Barak Neural Comp.


Double-Gabor Filters Are Independent Components of Small Translation-Invariant Image Patches Saeed Saremi, Terrence J. Sejnowski, Tatyana O. Sharpee Neural Comp.
Emergence of Optimal Decoding of Population Codes Through STDP Stefan Habenschuss, Helmut Puhr, Wolfgang Maass Neural Comp.
Randomly Connected Networks Have Short Temporal Memory Edward Wallace, Hamid Reza Maei, Peter E. Latham Neural Comp.
Dynamics of Multiple-Choice Decision Making Hongzhi You, Da-Hui Wang Neural Comp.

12 Aug 2013

Title Authors Journal Attention
Neural coding of taste by simultaneously recorded cells in the nucleus of the solitary tract of the rat Andrew M. Rosen and Patricia M. Di Lorenzo Neurophys.
Effects of spatiotemporal stimulus properties on spike timing correlations in owl monkey primary somatosensory cortex Jamie L. Reed, Pierre Pouget, Hui-Xin Qi, Zhiyi Zhou, Melanie R. Bernard, Mark J. Burish, and Jon H. Kaas Neurophys.
Dynamics of high-frequency synchronization during seizures Giri P. Krishnan, Gregory Filatov, and Maxim Bazhenov Neurophys.
Representation of tactile curvature in macaque somatosensory area 2 Jeffrey M. Yau, Charles E. Connor, and Steven S. Hsiao Neurophys.
Binocular integration and disparity selectivity in mouse primary visual cortex Benjamin Scholl, Johannes Burge, and Nicholas J. Priebe Neurophys.
Method for stationarity-segmentation of spike train data with application to the Pearson cross-correlation Claudio S. Quiroga-Lombard, Joachim Hass, and Daniel Durstewitz Neurophys
Compressive spatial summation in human visual cortex Kendrick N. Kay, Jonathan Winawer, Aviv Mezer, and Brian A. Wandell Neurophys.
Intracortical multiplication of thalamocortical signals in mouse auditory cortex Li, Li, Zhou, Tao, Zhang NN All (?)


Robust timing and motor patterns by taming chaos in recurrent neural networks Laje, Buonamono NN Guillaume


Synaptic mechanisms of adaptation and sensitization in the retina Nikolaev, Leung, Odermatt, Lagnado NN Ali, Joel


Temporal whitening by power-law adaptation in neocortical neurons Pozzorini, Naud, Mensi, Gerstner NN Tim, Joel
Olfactory cortical neurons read out a relative time code in the olfactory bulb Haddad, Lanjuin, Madisen, Zeng, Murthy, Uchida NN Yu, Joel


A functional and perceptual signature of the second visual area in primates Freeman, Ziemba, Heeger, Simoncelli, Movshon NN Tim
Sublinear integration underlies binocular processing in primary visual cortex Longordo, To, Ikeda, Stuart NN Alex, Joel


Successful Reconstruction of a Physiological Circuit with Known Connectivity from Spiking Activity Alone Gerhard, Kispersky, Gutierrez, Marder, Kramer, Eden PLoS CB All


Inferring Nonlinear Neuronal Computation Based on Physiologically Plausible Inputs MacFarland, Cui, Butts PLoS CB Alex, Joel, others (?)


Are V1 Simple Cells Optimized for Visual Occlusions? A Comparative Study Bornschein, Henniges, Lucke PLoS CB Tim, Joel

23 July 2013

Title Authors Journal Attention


High-Fidelity Coding with Correlated Neurons Rava Azeredo da Silveira and Michael J. Berry II arxiv Yu, Joel
A unified view on weakly correlated recurrent networks Luis Carlos Garcidel Molino, Khashayar Pakdaman, Jonathan Touboul, and Gilles Wainrib arxiv Yu, Joel
[ http://arxiv.org/abs/1306.2576 Disorder levels and synchronization in random balanced networks] Dmytro Grytskyy, Tom Tetzlaff, Markus Diesmann, Moritz Helias arxiv Guillaume
Optimal channel efficiency in a sensory network Thiago S. Mosqueiro* and Leonardo P. Maia† PRE Alex, Yoni


Detecting shapes in noise: tuning characteristics of global shape mechanisms Gunnar Schmidtmann*, Gael E. Gordon, David M. Bennett and Gunter Loffler* Frontiers CompNeuro Tim


Population Code, Noise Correlations, and Memory Frederic E. Theunissen and Julie E. Elie Neuron


Associative Learning Enhances Population Coding by Inverting Interneuronal Correlation Patterns James M. Jeanne,Tatyana O. Sharpee,Timothy Q. Gentner Neuron


A Motion Direction Preference Map in Monkey V4 Peichao Li,Shude Zhu,Ming Chen,Chao Han,Haoran Xu,Jiaming Hu,Yang Fang,Haidong D. Lu Neuron Tim


The Fine Structure of Shape Tuning in Area V4 Anirvan S. Nandysend,Tatyana O. Sharpee, John H. Reynolds,Jude F. Mitchell Neuron Tim
Neuronal Avalanches in the Resting MEG of the Human Brain Oren Shriki, Jeff Alstott, Frederick Carver, Tom Holroyd, Richard N.A. Henson, Marie L. Smith, Richard Coppola, Edward Bullmore, and Dietmar Plenz J Neurosci Alex

05 March 2013

Title Authors Journal Attention
Reading and Writing the Neural Code Garrett Stanley (review paper) Nature Neuro Attn: ALL


Inferring decoding strategies from choice probabilities in the presence of correlated variability Haefner, Gerwinn, Macke, Bethge Nature Neuro Attn: JZ, ACG, YH, ETSB
Lag normalization in an electrically coupled neural network Trehnholm, Shwab, Balasubramanian, Awatramani Nature Neuro Attn: GL
[http://www.nature.com/neuro/journal/v16/n2/pdf/nn.3305.pdf The organization of two new cortical interneuronal

circuits]

Jiang, Wong, Lee, Stornetta, Zhu Nature Neuro Attn: JZ, TO, MS
Cortico-cortical projections in mouse visual cortex are functionally target specific Glickfield, Andermann, Bonin, Reid Nature Neuro Attn: JZ, TO, MS, ETSB
Layer-specific excitatory circuits differentially control recurrent network dynamics in the neocortex Beltramo et al. Nature Neuro Attn: ALL
Long-term modification of cortical synapses improves sensory perception Froemke et al. Nature Neuro Attn: JZ, MS, TO
Optimal Properties of Analog Perceptrons with Excitatory Weights CLopath and Brunel PLoS CB Attn: JZ (and others?)
Pairwise Analysis Can Account for Network Structures Arising from Spike-Timing Dependent Plasticity Babadi and Abbott PLoS CB Attn: ALL


Emergent Sensing of Complex Environments by Mobile Animal Groups Berdahl... Couzin Science Attn: ALL***


Neural variability, or lack thereof Timothée Masquelier Frontiers Comp Neuro


Simulation of stochastic network dynamics via entropic matching Tiago Ramalho1,*, Marco Selig2, Ulrich Gerland1, and Torsten A. Enßlin2 PRE


19 Feb 2013

Title Authors Journal Attention
Impact of intrinsic biophysical diversity on the activity of spiking neurons Man Yi Yim, Ad Aertsen, Stefan Rotter PRE

5 Feb 2013

Title Authors Journal Attention
Retinal Metric: A Stimulus Distance Measure Derived from Population Neural Responses Gašper Tkačik1,*, Einat Granot-Atedgi2, Ronen Segev3, and Elad Schneidman2,† PRL

29 Jan 2013

Title Authors Journal Attention
Higher Order Correlations within Cortical Layers Dominate Functional Connectivity in Microcolumns Urs K\"oster and Jascha Sohl-Dickstein and Charles M. Gray and Bruno A. Olshausen ArXiv Joel, Alex


Dynamics and spike trains statistics in conductance-based Integrate-and-Fire neural networks with chemical and electric synapses Rodrigo Cofr\'e and Bruno Cessac ArXiv All
Statistical modelling of higher-order correlations in pools of neural activity Fernando Montani, Elena Phoka, Mariela Portesi, Simon R. Schultz ArXiv Joel, Alex


Dynamic finite size effects in spiking neural networks Micheal Buice and Carson Chow PLoS CB Guillaume


How sensitive is the human visual system to the local statistics of natural images Holly Gerhard, Felix Wichmann and Mathias Bethge PLoS CB Tim
The effects of temperature on the stability of a neuronal oscillator Anatoly Rinberg, Adam Taylor, Eve Marder PLoS CB All **
Orthogonal microorganization of orientation and spatial frequency in primate primary visual cortex Ian Nauhaus, Kristina Nielsen, and Edward Callaway NN Tim
Integrate and fire neural networks, piecewise contractive maps and limit cycles Eleonora Catsigeras, Pierre Guiraud J. Math Biol.
Generalized spin models for coupled cortical feature maps obtained by coarse graining correlation based synaptic learning rules Peter J. Thomas, Jack D. Cowan J. Math Biol.
Neural Activity during Natural Viewing of Sesame Street Statistically Predicts Test Scores in Early Childhood Jessica F. Cantlon, Rosa Li PLOS Biology

8 Jan 2013

Title Authors Journal Attention
Inhibition dominates sensory responses in the awake cortex Bilal Haider, Michael Häusser, & Matteo Carandini Nature
Nonlinear dendritic integration of sensory and motor input during an active sensing task Nature
[http://www.pnas.org/content/109/51/21116.full.pdf Human seizures self-terminate across spatial scales

via a critical transition]

Mark A. Kramer, Wilson Truccolo, Uri T. Eden, Kyle Q. Lepage, Leigh R. Hochberg, Emad N. Eskandar, Joseph R. Madsen, Jong W. Lee, Atul Maheshwari, Eric Halgren, Catherine J. Chu, and Sydney S. Cash PNAS
Multitasking Associative Networks Elena Agliari1,2, Adriano Barra3, Andrea Galluzzi3, Francesco Guerra3,4, and Francesco Moauro3 PRL
Statistical Thermodynamics of Natural Images Greg J. Stephens*, Thierry Mora†, Gašper Tkačik‡, and William Bialek PRL


4 Dec 2012

Title Authors Journal Attention
A map of visual space in the primate entorhinal cortex NJ Killian, MJ Jutras, EA Buffalo Nature


Neuroscience Fiction G Marcus New Yorker
A Large-Scale Model of the Functioning Brain C Eliasmith, TC Stewart, X Choo, T Bekolay, T DeWolf, Y Tang, D Rasmussen Science
Averaging principle for second-order approximation of heterogeneous models with homogeneous models G Fibich, A Gavious, E Solan PNAS

27 Nov 2012

Title Authors Journal Attention
Time scales of memory, learning, and plasticity C Tetzlaff, C Kolodziejski, I Markelic, F Wörgötter Biological Cybernetics
Self-organized criticality in a network of interacting neurons J D Cowan, J Neuman, W van Drongelen arXiv
Spatio-temporal spike trains analysis for large scale networks using maximum entropy principle and Monte-Carlo method Hassan Nasser, Olivier Marre, Bruno Cessac arXiv
The simplest maximum entropy model for collective behavior in a neural network Gasper Tkacik, Olivier Marre arXiv
Potential mechanisms for imperfect synchronization in parkinsonian basal ganglia Choongseok Park, Leonid Rubchinsky arXiv
Correlated input reveals coexisting coding schemes in a sensory cortex Luc Estebanez, Sami El Boustani Nature Neuroscience
Critical-State Dynamics of Avalanches and Oscillations Jointly Emerge from Balanced Excitation/Inhibition in Neuronal Networks Simon-Shlomo Poil1,*, Richard Hardstone J Neuroscience
Functional Connectivity and Tuning Curves in Populations of Simultaneously Recorded Neurons Ian Stevenson .... Konrad Kording PLoS CB Tim, Joel


Statistics of spike trains in conductance-based neural networks: Rigorous results Bruno Cessac J Math Neuro
Mean-field description and propagation of chaos in networks of Hodgkin-Huxley and FitzHugh-Nagumo neurons Javier Baladron1, Diego Fasoli1, Olivier Faugeras1,2* and Jonathan Touboul3,4,5,6 J Math Neuro
A Contraction Argument for Two-Dimensional Spiking Neuron Models Eric Foxall, Roderick Edwards, Slim Ibrahim, and P. van den Driessche SIADS
Noise-Induced Behaviors in Neural Mean Field Dynamics Jonathan Touboul, Geoffroy Hermann, and Olivier Faugeras SIADS
Single spikes may suffice Steven M. Chase Neurophys
Nearly Extensive Sequential Memory Lifetime Achieved by Coupled Nonlinear Neurons Taro Toyoizumi Neurocomp
The Shape of Phase-Resetting Curves in Oscillators with a Saddle Node on an Invariant Circle Bifurcation G. Bard Ermentrout, Leon Glass, Bart E. Oldeman Neurocomp
Dynamic Flux Tubes Form Reservoirs of Stability in Neuronal Circuits Michael Monteforte and Fred Wolf Phys. Review X
On the efficient calculation of van Rossum distances Conor Houghton Thomas Kreuz Network: Computation in Neural Systems
Learning stable, regularized latent model neural population dynamics Lars Buesing, Jakob H Macke, Maneesh Sahani Network: Computation in Neural Systems
Getting a handle on how the brain generates complexity Maximillian Riesenhuber Network: Competition in Neural Systems
A model of the response of visual area V2 combinations of orientations Alessio Plebe Network: Competition in Neural Systems

19 Nov 2012

Title Authors Journal Attention
Support vector machines for spike pattern classification with a leaky integrate-and-fire neuron Maxime Ambard1,2* and Stefan Rotter1,2 Frontiers Comput Neuro


Traveling pulses in a stochastic neural field model of direction selectivity Paul C. Bressloff* and Jeremy Wilkerson Frontiers Comput Neuro


Closed-loop optogenetic control of thalamus as a tool for interrupting seizures after cortical injury Jeanne T Paz, Thomas J Davidson, Eric S Frechette, Bruno Delord, Isabel Parada, Kathy Peng, Karl Deisseroth & John R Huguenard NN
Correlated input reveals coexisting coding schemes in a sensory cortex Luc Estebanez, Sami El Boustani, Alain Destexhe & Daniel E Shulz NN


Sensorimotor Learning Biases Choice Behavior: A Learning Neural Field Model for Decision Making Christian Klaes1,2#, Sebastian Schneegans3#, Gregor Schöner3, Alexander Gail1* PLoS CB
Efficient “Communication through Coherence” Requires Oscillations Structured to Minimize Interference between Signals Thomas E. Akam¤*, Dimitri M. Kullmann PLoS CB


Predictive Dynamics of Human Pain Perception Guillermo A. Cecchi1*, Lejian Huang2, Javeria Ali Hashmi2, Marwan Baliki2, María V. Centeno2, Irina Rish1, A. Vania Apkarian2* PLoS CB
Phasic Firing in Vasopressin Cells: Understanding Its Functional Significance through Computational Models Duncan J. MacGregor, Gareth Leng* PLoS CB
Spatially Pooled Contrast Responses Predict Neural and Perceptual Similarity of Naturalistic Image Categories Iris I. A. Groen1*, Sennay Ghebreab1,2, Victor A. F. Lamme1, H. Steven Scholte1 PLoS CB


22 October 2012

Title Authors Journal Attention
Extracting functionally feedforward networks from a population of spiking neurons Kathleen Vincent1, Joseph S. Tauskela2 and Jean-Philippe Thivierge1* Frontiers Comp Neuro
Fundamental limits on persistent activity in networks of noisy neurons Yoram Burak and Ila R. Fiete PNAS
Statistical connectivity provides a sufficient foundation for specific functional connectivity in neocortical neural microcircuits Sean L. Hill, Yun Wang, Imad Riachi, Felix Schürmann, and Henry Markram PNAS General
Anticipating Critical Transitions Marten Scheffer, Stephen R. Carpenter, Timothy M. Lenton, Jordi Bascompte, William Brock, Vasilis Dakos, Johan van de Koppel, Ingrid A. van de Leemput, Simon A. Levin, Egbert H. van Nes, Mercedes Pascual, John Vandermeer Science

15 October 2012

Title Authors Journal Attention
The simplest maximum entropy model for collective behavior in a neural network Gasper Tkacik, Olivier Marre, Thierry Mora, Dario Amodei, Michael J. Berry II, William Bialek arxiv
Self-organized criticality in a network of interacting neurons J D Cowan, J Neuman, W van Drongelen arxiv
Critical brain dynamics at large scale Dante R. Chialvo* arxiv
Spatio-temporal spike trains analysis for large scale networks using maximum entropy principle and Monte-Carlo method Hassan Nasser, Olivier Marre, Bruno Cessac* arxiv
Population spikes in cortical networks during different functional states Shirley Mark and Misha Tsodyks* Frontiers Comp Neuro


Perception and self-organized instability Karl Friston1*, Michael Breakspear2 and Gustavo Deco3 Frontiers Comp Neuro


Complex dynamics in recurrent cortical networks based on spatially realistic connectivities N. Voges*† and L. Perrinet† Frontiers Comp Neuro
Slow dynamics and high variability in balanced cortical networks with clustered connections Ashok Litwin-Kumar & Brent Doiron Nature Neuroscience General
Analysis of Slow (Theta) Oscillations as a Potential Temporal Reference Frame for Information Coding in Sensory Cortices Christoph Kayser, Robin A. A. Ince, Stefano Panzeri PLoS CB General


8 October 2012

Title Authors Journal Attention
Theory and Simulation in Neuroscience Wulfram Gerstner, Henning Sprekeler, Gustavo Deco Science General
Closed-Loop Control of Epilepsy by Transcranial Electrical Stimulation Antal Berényi, Mariano Belluscio, Dun Mao, György Buzsáki Science General
Optimal isn’t good enough Gerald E. Loeb Biological Cybernetics General
Heavy use of equations impedes communication among biologists Tim W. Fawcett and Andrew D. Higginson PNAS General
Scale invariance in the dynamics of spontaneous behavior Alex Proekt, Jayanth R. Banavar, Amos Maritan, and Donald W. Pfaff PNAS Alex
Branching with Local Probability as a Paradigm of Self-Organized Criticality Stefan Hergarten PRL Alex, Yoni
Macaque V1 representations in natural and reduced visual contexts: spatial and temporal properties and influence of saccadic eye movements Octavio Ruiz and Michael A. Paradiso Neurophys Tim
Sparse Coding on the Spot: Spontaneous Retinal Waves Suffice for Orientation Selectivity Jonathan J. Hunt, Michael Ibbotson, Geoffrey J. Goodhill Neuro Comp

5 July 2012

Title Authors Journal Attention
Learning Invariance from Natural Images Inspired by Observations in the Primary Visual Cortex Michael Teichmann, Jan Wiltschut, Fred Hamker NeuroComp Tim
On the Relation Between Encoding and Decoding of Neuronal Spikes Shinsuke Koyama NeuroComp
Fisher and Shannon Information in Finite Neural Populations Stuart Yarrow, Edward Challis, Peggy Seriès NeuroComp
Competition Through Selective Inhibitory Synchrony Ueli Rutishauser, Jean-Jacques Slotine, Rodney J. Douglas NeuroComp


26 June 2012

Title Authors Journal Attention
Computing with Neural Synchrony Romain Brette PLoS Comp Bio
Complementarity of Spike- and Rate-Based Dynamics of Neural Systems M. T. Wilson1*, P. A. Robinson2,3, B. O'Neill1, D. A. Steyn-Ross1 PLoS Comp Bio
Analysis of synaptic scaling in combination with Hebbian plasticity in several simple networks Christian Tetzlaff1,2,3*, Christoph Kolodziejski2,3,4, Marc Timme2,3,4 and Florentin Wörgötter1,3 Frontiers Comput Neuro Alex

12 June 2012

Title Authors Journal Attention
Optimal Heterogeneity for Coding in Spiking Neural Networks J. F. Mejias* and A. Longtin PRL


A Maximum Entropy Test for Evaluating Higher-Order Correlations in Spike Counts Arno Onken1,2*, Valentin Dragoi3, Klaus Obermayer1,2 PLoS Comp Bio Nick, Alex
Mean-field description and propagation of chaos in networks of Hodgkin-Huxley and FitzHugh-Nagumo neurons Javier Baladron, Diego Fasoli, Olivier Faugeras and Jonathan Touboul J Math Neuro
A Contraction Argument for Two-Dimensional Spiking Neuron Models Eric Foxall, Roderick Edwards, Slim Ibrahim, and P. van den Driessche SIADS
Criteria for robustness of heteroclinic cycles in neural microcircuits Peter Ashwin1*, Özkan Karabacak2 and Thomas Nowotny3 J Math Neuro
Thermodynamic Model of Criticality in the Cortex Based On EEG/ECOG Data Robert Kozma, Marko Puljic, Walter J. Freeman arXiv
Speed and accuracy in a visual motion discrimination task as performed by rats Pamela Reinagel, Emily Mankin, Adam Calhoun arXiv
Data Visualization in the Neurosciences: Overcoming the Curse of Dimensionality Elena A. Allen1, 2, , , Erik B. Erhardt1, 3 and Vince D. Calhoun1, 4 Neuron
Stimulus-dependent maximum entropy models of neural population codes Einat Granot-Atedgi, Gašper Tkačik, Ronen Segev, Elad Schneidman arXiv
Retinal metric: a stimulus distance measure derived from population neural responses Einat Granot-Atedgi, Gašper Tkačik, Ronen Segev, Elad Schneidman arXiv

22 May 2012

Title Authors Journal Attention
Universal Critical Dynamics in High Resolution Neuronal Avalanche Data Nir Friedman1, Shinya Ito2, Braden A. W. Brinkman1, Masanori Shimono2,5, R. E. Lee DeVille3, Karin A. Dahmen1, John M. Beggs2, and Thomas C. Butler4,* PRL Alex
Statistical Properties of Avalanches in Networks Daniel B. Larremore, Marshall Y. Carpenter, Edward Ott, Juan G. Restrepo arXiv Alex

15 May 2012

Title Authors Journal Attention
Quality and sustainability of software tools in neuroscience Marc-Oliver Gewaltig, Robert Cannon arXiv http://www.cnsorg.org/cns-2012-tutorials#Davison
Population coding in sparsely connected networks of noisy neurons Bryan P. Tripp1* and Jeff Orchard Frontiers Comp Neuro
Recurrent coupling improves discrimination of temporal spike patterns Chun-Wei Yuan1* and Christian Leibold1,2 Frontiers Comp Neuro
Sensitivity of global network dynamics to local parameters versus motif structure in a cortexlike neuronal model E. Kopelowitz1,2, M. Abeles2, D. Cohen2, and I. Kanter1,2 PRE

1 May 2012

Title Authors Journal Attention
Decorrelation of neural-network activity by inhibitory feedback Amber Polk, Ashok Litwin-Kumar, and Brent Doiron PNAS All
Neuronal avalanches of a self-organized neural network with active-neuron-dominant structure Xiumin Li, Michael Small arXiv All
The balance between excitation and inhibition controls the temporal organization of neuronal avalanches F. Lombardi, H. J. Herrmann, C. Perrone-Capano, D. Plenz, L. de Arcangelis arXiv All

24 Apri 2012

Title Authors Journal Attention
Correlated neural variability in persistent state networks Tom Tetzlaff, Moritz Helias, Gaute T. Einevoll, Markus Diesmann arXiv Yu


17 Apri 2012

Title Authors Journal Attention
Statistics of spike trains in conductance-based neural networks: Rigorous results Bruno Cessac J Math Neuro
Bistability and Spatiotemporal Irregularity in Neuronal Networks with Nonlinear Synaptic Transmission Gianluigi Mongillo, David Hansel, and Carl van Vreeswijk PRL

10 Apri 2012

Title Authors Journal Attention
Emergent bursting and synchrony in computer simulations of neuronal cultures Niru Maheswaranathan1, Silvia Ferrari2, Antonius M. J. VanDongen3 and Craig S. Henriquez1 Frontiers Guillamue, Megan


03 Apri 2012

Title Authors Journal Attention
A neurophysiological–metabolic model for burst suppression ShiNung Ching, Patrick L. Purdon, Sujith Vijayan, Nancy J. Kopell, and Emery N. Brown PNAS Guillaume
Relationships between spike-free local field potentials and spike timing in human temporal cortex Stavros Zanos, Theodoros P. Zanos, Vasilis Z. Marmarelis, George A. Ojemann, and Eberhard E. Fetz J Neurophys
Learning Intermediate-Level Representations of Form and Motion from Natural Movies Charles F. Cadieu, Bruno A. Olshausen Neural Comp. Tim
Regularized Variational Bayesian Learning of Echo State Networks with Delay&Sum Readout Dmitriy Shutin, Christoph Zechner, Sanjeev R. Kulkarni, H. Vincent Poor Neural Comp. Alex
The Computational Power of Interactive Recurrent Neural Networks Jérémie Cabessa, Hava T. Siegelmann Neural Comp. Tim, Guillaume?
Rewiring-Induced Chaos in Pulse-Coupled Neural Networks Takashi Kanamaru, Kazuyuki Aihara Neural Comp. Dynamics
Ongoing Cortical Activity at Rest: Criticality, Multistability, and Ghost Attractors Gustavo Deco1,2 and Viktor K. Jirsa3 J Neuro Alex
Analysis of the stabilized supralinear network Daniel B. Rubin, Yashar Ahmadian, Kenneth D. Miller arXiv Dynamics
State-Space Analysis of Time-Varying Higher-Order Spike Correlation for Multiple Neural Spike Train Data Hideaki Shimazaki, Shun-ichi Amari, Emery N. Brown, Sonja Grün PLoS H.O.C
Effect of Nonstationarity on Models Inferred from Neural Data Joanna Tyrcha, Yasser Roudi, Matteo Marsili, John Hertz arXiv Correlations, Ising
Recurrent interactions in spiking networks with arbitrary topology Volker Pernice, Benjamin Staude, Stefano Cardanobile, and Stefan Rotter PRE Yu
Modulating the Precision of Recurrent Bursts in Cultured Neural Networks Joon Ho Choi, June Hoan Kim, Ryoun Heo, and Kyoung J. Lee* PRL
Olfactory sensor processing in neural networks: lessons from modeling the fruit fly antennal lobe J. Henning Proske, Marco Wittmann and C. Giovanni Galizia* Neuroeng.

06 March 2012

Title Authors Journal Attention
Enhancing synchrony in chaotic oscillators by dynamic relaying R Banerjee et al PRE
Canards of mixed type in a neural burster M. Desroches1, J. Burke, T. J. Kaper, and M. A. Kramer PRE Guillaume and Megan
Thalamic control of cortical states Poulet, Fernandez, Crochet, & Petersen Nature Neuroscience Guillaume and Megan
Paradoxical Evidence Integration in Rapid Decision Processes Rüter, Marcille, Sprekeler, Gerstner, Herzog PLOS Comp Bio Nick
Mechanisms underlying cortical activity during value guided choice Hunt, Kolling, Soltani, Woolrich, Rushworth & Behrens Nature Neuroscience Nick

21 February 2012

Title Authors Journal Attention
Neural population densities shape network correlations Jérémie Lefebvre and Theodore J. Perkins PRE
The Ising decoder: reading out the activity of large neural ensembles Michael T. Schaub · Simon R. Schultz J Comp Neuro Alex, David
Theory of correlation in a network with synaptic depression Yasuhiko Igarashi, Masafumi Oizumi, and Masato Okada PRE Alex, David
Separate Prefrontal-Subcortical Circuits Mediate Different Components of Risk-Based Decision Making J Neurosci Nick
Emergence of Stable Functional Networks in Long-Term Human Electroencephalography Catherine J. Chu, Mark A. Kramer et al. J Neurosci Guillaume
Gain control by layer six in cortical circuits of vision Shawn R. Olsen, Dante S. Bortone, Hillel Adesnik & Massimo Scanziani Nature All
Fractal-based Correlation Analysis for Resting State Functional Connectivity of the Rat Brain in Functional MRI Wonsang You, Joerg Stadler arXiv q-bio Alex, David
A showcase of torus canards in neuronal bursters John Burke, Mathieu Desroches, Anna M Barry, Tasso J Kaper and Mark A Kramer J Math Neuro Alex, David


14 February 2012

Title Authors Journal Attention
Critical truths about power laws Stumpf, Porter Science
Diffusion laws in dendritic spines Holcman, Schuss J. Math Neuro Pedro
Criteria for robustness of heteroclinic cycles in neural microcircuits Ashwin, Karabacak, Nowortny J. Math Neuro Guillaume
Cross-species studies of orbitofrontal cortex and value-based decision-making Jonathan D Wallis Nature Neuroscience Nick
Effect on information transfer of synaptic pruning driven by spike-timing-dependent plasticity Ren et al, at Peking University PRE
An astrocyte TRP switch for inhibition Laura E Clarke & David Attwell Nature Neuroscience All
Ribbon synapses compute temporal contrast and encode luminance in retinal rod bipolar cells NW Oesch & JS Diamond Nature Neuroscience Tim
Subthalamic nucleus stimulation reverses mediofrontal influence over decision threshold JF Cavanagh, et.al. Nature Neuroscience Guillaume, Megan

07 February 2012

Title Authors Journal Attention
Interrelating anatomical, effective, and functional brain connectivity using propagators and neural field theory PRE
Cellular and circuit mechanisms maintain low spike co-variability and enhance population coding in somatosensory cortex C. Ly, B. Dorion Frontiers Comp Neuro

31 January 2012

Title Authors Journal Attention


Locally Synchronized Synaptic Inputs Takahashi, Kitamura, Matsuo, Mayford, Kano, Matsuki, Ikegaya Science Pedro
Inhibitory Plasticity Balances Excitation and Inhibition in Sensory Pathways and Memory Networks Vogels, Sprekeler, Zenke, Clopath, Gerstner Science All
The What and Where of Adding Channel Noise to Hodgkin and Huxley Goldwyn and Shea-Brown PLOS compbio All
Significance of Input Correlations in Striatal Function Man Yi Yim, Ad Aertsen, Arvind Kumar PLOS compbio All
Sparse Gamma Rhythms Arising through Clustering in Adapting Neuronal Networks Zachary P. Kilpatrick, Bard Ermentrout PLOS compbio
Balanced Synaptic Input Shapes the Correlation between Neural Spike Trains Litwin-Kumar, Oswald, Urban, Doiron PLOS compbio
Probabilistic Inference in General Graphical Models through Sampling in Stochastic Networks of Spiking Neurons Dejan Pecevski, Lars Buesing, Wolfgang Maass PLOS compbio
Balancing Feed-Forward Excitation and Inhibition via Hebbian Inhibitory Synaptic Plasticity Yotam Luz, Maoz Shamir PLOS compbio
Membrane Properties and the Balance between Excitation and Inhibition Control Gamma-Frequency Oscillations Arising from Feedback Inhibition Michael N. Economo, John A. White PLOS compbio
Failure of Adaptive Self-Organized Criticality during Epileptic Seizure Attacks Meisel1, Storch, Hallmeyer-Elgner, Bullmore, Gross PLOS compbio Alex

1 November 2011

Title Authors Journal Attention


Inferring network dynamics and neuron properties from population recordings Mattia, Linaro, Storace Frontiers - Computational Neuroscience Eli
Representation of Dynamical Stimuli in Populations of Threshold Neurons Tatjana Tchumatchenko, Fred Wolf PLOS - Computational Biology Eli
A First Attempt to Bring Computational Biology into Advanced High School Biology Classrooms Gallegher...Goldberg, CU Boulder PLOS - Computational Biology All
Brain Rhythms Reveal a Hierarchical Network Organization Steinke and Galan PLOS - Computational Biology cool?
Model Cortical Association Fields Account for the Time Course and Dependence on Target Complexity of Human Contour Perception Gintautas...Kenyon PLOS - Computational Biology Tim
Coexistence of Lateral and Co-Tuned Inhibitory Configurations in Cortical Networks Levy and Reyes PLOS - Computational Biology

12 September 2011

Title Authors Journal Attention


Behavioural improvements with thalamic stimulation after severe traumatic brain injury Schiff,...Rezai Nature All
In vivo Conditions Induce Faithful Encoding of Stimuli by Reducing Nonlinear Synchronization in Vestibular Sensory Neurons Schneider, Cullun, Chacron PLoS Computational Biology noise, in vitro/in vivo

23 August 2011

Title Authors Journal Attention


Alterations in Brain Connectivity Underlying Beta Oscillations in Parkinsonism Moran, Brown PLoS Comp Bio Guillaume, Megan
Measuring and interpreting neuronal correlations Cohen, Kohn Nat Rev Nsci Yu, Alex, Nick!!
Insights from a Simple Expression for Linear Fisher Information in a Recurrently Connected Population of Spiking Neurons Beck, Bejjanki, Pouget Neural Computation Everyone?
Diffusive Information Accumulation by Minimal Recurrent Neural Models of Decision Making Smith, McKenzie Neural Computation Nick
Traveling Bumps and Their Collisions in a Two-Dimensional Neural Field Lu, Sato, Amari Neural Computation Eli, Nathan, Pedro
Mechanisms That Modulate the Transfer of Spiking Correlations Rosenbaum, Josic Neural Computation Eric
Integration of Reinforcement Learning and Optimal Decision-Making Theories of the Basal Ganglia Bogacz, Larsen Neural Computation Nick, Guillaume, Eric
Suitability of V1 Energy Models for Object Classification Bergstra, Bengio, Louradour Neural Computation Tim

2 August 2011

Title Authors Journal Attention
Explosive Percolation Is Continuous Riordan, Warnke Science Alex, Eric
Neural and computational mechanisms of postponed decisions Martinez-Garcia, Rolls, Deco, Romo PNAS Nick
Separating intrinsic from extrinsic fluctuations in dynamic biological systems Hilfinger, Paulsson PNAS General


27 June 2011

Title Authors Journal Attention
Synchronization from second order network connectivity statistics Liqiong Zhao, Bryce Beverlin, Tay Netoff, Duane Q. Nykamp Frontiers Yu
Sustained activity in hierarchical modular neural networks: self-organized criticality and oscillations Sheng-Jun Wang, Claus Hilgetag and Changsong Zhou Frontiers Alex
Robust transient dynamics and brain functions Mikhail Rabinovich, Pablo Varona Frontiers Guillame
Selective Attention from Voluntary Control of Neurons in Prefrontal Cortex Schafer, Moore Science General
Improving model fidelity and sensitivity for complex systems through empirical information theory Majda, Gershgorin PNAS Eric, Andrea

21 June 2011

Title Authors Journal Attention
Sparse low-order interaction network underlies a highly correlated and learnable neural population code Ganmor, Segev, Schneidman PNAS Eric, Andrea
NMDA-Induced Burst Firing in a Model Subthalamic Nucleus Neuron Kubota, Rubin J Neurophysiol Eric, Guillaume
Inter-spike interval distributions of spiking neurons driven by fluctuating inputs Ostojic J Neurophysiol Mike

7 June 2011

Title Authors Journal Attention
Neurobiologically Realistic Determinants of Self-Organized Criticality in Networks of Spiking Neurons Rubinov, Sporns, Thivierge, Breakspear PLoS Comput Biol Alex

30 May 2011

Title Authors Journal Attention
How structure determines correlations in neuronal networks Pernice, Staude, Cardanobile, Rotter PLoS Comput Biol Eric, Yu

17 May 2011

Title Authors Journal Attention
On Numerical Simulations of Integrate-and-Fire Neural Networks Hansel, Mato, Meunier, Neltner Neural Computation Alex, Eric
Control desk for the neural switchboard NY Times General interest

10 May 2011

Title Authors Journal Attention
Inter-spike interval distributions of spiking neurons driven by fluctuating inputs Srdjan Ostojic J Neurophysiol
Impact of Fast Sodium Channel Inactivation on Spike Threshold Dynamics and Synaptic Integration Platkiewicz and Brette PLoS Comp Bio
Temporal coding in a nervous system Zane N. Aldworth, Alexander G. Dimitrov, Graham I. Cummins, Tomáš Gedeon, John P. Miller PLoS Comp Bio

3 May 2011

Title Authors Journal Attention
Quantifying the Relative Contributions of Divisive and Subtractive Feedback to Rhythm Generation Tabak, Rinzel, Bertram PLoS Comp Bio
Minimum Information About a Simulation Experiment (MIASE) Waltemath et al PLoS Comp Bio
Designing optimal stimuli to control neuronal spike timing Tehrani, Packer, Yuste, Paninski J Neurophysiol
Sparse coding in striate and extrastriate visual cortex Willmore, Mazer, Gallant J Neurophysiol

19 April 2011

Title Authors Journal Attention
Timescale-dependent shaping of correlation by olfactory bulb lateral inhibition Sonya Giridhar, Brent Doiron, and Nathaniel N. Urban PNAS
In vivo conditions influence the coding of stimulus features by bursts of action potentials Oscar Avila Akerberg and Maurice J. Chacron J. Comp. Neuro Guillaume, Eric
The capabilities and limitations of conductance-based compartmental neuron models with reduced branched or unbranched morphologies and active dendrites Eric B. Hendrickson, Jeremy R. Edgerton and Dieter Jaeger J. Comp. Neuro Mike, Adrienne
Special Issue on Methods of Information Theory Guest Editors: Alexander G. Dimitrov, Aurel Lazar and Jonathan Victorr J. Comp. Neuro

5 April 2011

Title Authors Journal Attention
Two-Dimensional Bumps in Piecewise Smooth Neural Fields with Synaptic Depression Paul C. Bressloff and Zachary P. Kilpatrick SIAM Applied Math Eli, Nathan, Pedro
Minimal Models of Multidimensional Computations Fitzgerald, Sincich, Sharpee PLoS Comp Bio Adrienne, Mike
A Granger Causality Measure for Point Process Models of Ensemble Neural Spiking Activity Kim, Putrino, Ghosh, Brown PLoS Comp Bio Eric
Activation of subthalamic neurons by contralateral subthalamic deep brain stimulation in Parkinson disease Walker et al J Neurophysiol Guillaume, Eric

15 March 2011

Title Authors Journal Attention
Dimension Reduction and Dynamics of a Spiking Neural Network Model for Decision Making under Neuromodulation Philip Eckhoff, KongFatt Wong-Lin, and Philip Holmes SIADS Nick

8 March 2011

Title Authors Journal Attention
Spike-Based Population Coding and Working Memory Boerlin and Deneve PLoS Comp Bio General
Visual Stimulation Decorrelates Neuronal Activity Oram J Neurophysiol Eric, Andrea
Synaptic Plasticity and Connectivity Requirements to Produce Stimulus-Pair Specific Responses in Recurrent Networks of Spiking Neurons Bourjaily and Miller PLos Comp Bio General
Power-Law Input-Output Transfer Functions Explain the Contrast-Response and Tuning Properties of Neurons in Visual Cortex Persi et al PLoS Comp Bio General

8 February 2011

25 January 2011

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