##############################################################
#
#     SAMPLE RUN FILE USING THE TOMOGRAPH FILE FEATURE
#
#     RUN NAME:     
#     CREATED:
#     OWNER:
#
#
#     This is a sample parameter file that you may copy to 
#     your working directory and use as a template for your 
#     simulations.
#	
#	This gives a sample of how a run file would invoke multiple tomographs.
#	Three tomograph parameter files are invoked near the end of the run file.
#	The collimator, detector, and binning parameter file declarations are
#	omitted or left blank.
#
#	The format of a tomograph file can be seen in the sample file
#	a.mytomofile.
#
#
#    A tomograph parameter file specifies the collimator, detector, and binning
#	parameter files.  Multiple tomograph parameter files may be specified in the
#	run file to simultaneously simulate multiple tomographs,
#
#	Alternatively, the collimator, detector, and binning parameter files can be
#	specified directly in the run file.  However, when specifying the collimator and
#	detector parameters in the run file, only one collimator-detector combination
#	masy be specified.
#
###############################################################

# RUNTIME OPTIONS
BOOL    simulate_stratification        	= false
BOOL    simulate_forced_detection      	= false
BOOL    forced_non_absorption          	= false
REAL    acceptance_angle               		= 90.0
LONGLONG num_to_simulate                 = 1000000
BOOL    simulate_SPECT                  = false
BOOL    simulate_PET_coincidences_only  = true
BOOL    simulate_PET_coincidences_plus_singles  = false
BOOL    adjust_for_positron_range       	= false
BOOL    adjust_for_collinearity         	= false
REAL    minimum_energy                  	= 10.0
REAL    photon_energy                   		= 511.0
REAL    weight_window_ratio             	= 1.0
BOOL    point_source_voxels             	= false
BOOL    line_source_voxels             	= true
INT        random_seed             			= 2

# OBJECT GEOMETRY VALUES
LIST    object = 2
        INT             num_slices = 1
        LIST    slice = 9
                INT     slice_number  = 0
                REAL    zMin = -8.5
                REAL    zMax = 8.5
                REAL    xMin = -25.6
                REAL    xMax = 25.6
                REAL    yMin = -25.6
                REAL    yMax = 25.6
                INT     num_X_bins = 5
                INT     num_Y_bins = 5

# TARGET CYLINDER INFORMATION
LIST target_cylinder = 3
        REAL    target_zMin =   -8.5
        REAL    target_zMax =   8.5
        REAL    radius =        33.49

# ACTIVITY INDEX FILE
STR     activity_indexes = "abc.act_indexes"

# ACTIVITY TABLE FILE
STR     activity_table = "/simset/phgdev/phg.data/phg_act_table"

# ACTIVITY INDEX TO TABLE TRANSLATION FILE
STR     activity_index_trans = "/simset/phgdev/phg.data/phg_act_index_trans"

# ATTENUATION INDEX FILE
STR     attenuation_indexes = "abc.att_indexes"

# ATTENUATION TABLE FILE
STR  attenuation_table = "/simset/phgdev/phg.data/phg_att_table"

# ATTENUATION INDEX TO TABLE TRANSLATION FILE
STR     attenuation_index_trans = "/simset/phgdev/phg.data/phg_att_index_trans"

# TOMOGRAPH PARAMETER FILE
STR	tomograph_params_file = "a.mytomofile"

# TOMOGRAPH PARAMETER FILE
STR	tomograph_params_file = "b.mytomofile"

# TOMOGRAPH PARAMETER FILE
STR	tomograph_params_file = "c.mytomofile"


