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== Principal Investigator ==
== Principal Investigator ==
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{| border=0
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{| border=0 style="width: 100%"
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|[[Image:Klavins_face.jpg|100px]]
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|width="110px"|[[Image:Klavins_face.jpg|100px]]
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|  
: '''Eric Klavins'''
: '''Eric Klavins'''
: Associate Professor
: Associate Professor
-
: [http://ericklavins.blogspot.com Blog]
 
: [[User:Klavins|more info]]
: [[User:Klavins|more info]]
 +
|}
|}
== Postdocs ==
== Postdocs ==
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{| border=0
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{| border=0 style="width: 100%"
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|[[Image:Rob.jpg|100px]]
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To apply for a position as a postdoctoral scholar, please send a cover letter, your CV, and your most recent ''synthetic biology'' paper to k.l.a.v.i.n.s[at]u.w[dot]e.d.u.
-
|
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: '''Rob Egbert'''
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-
: Postdoctoral Scholar
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-
: Synthetic Biology
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-
: [[User:Egbert|more info]]
+
-
|-
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-
 
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|[[Image:Havens.jpg|100px]]
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-
|
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: '''Kyle Havens'''
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-
: Postdoctoral Scholar
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-
: Auxin Synthetic Biology
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-
: [[User:Havens|more info]]
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|}
|}
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== Graduate Students ==
== Graduate Students ==
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{| border=0
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{| border=0 style="width: 100%"
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|[[Image:NickB.png|100px]]
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|width="110px"|[[Image:Amimeur.png|100px]]
 +
|
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: '''Tileli Amimeur'''
 +
: Electrical Engineering
 +
: Protocol Assimilation
 +
: [[User:Amimeur|more info]]
 +
|-
 +
 
 +
|width="110px"|[[Image:NickB.png|100px]]
|
|
: '''Nick Bolten'''
: '''Nick Bolten'''
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: Graduate Student Research Assistant, Electrical Engineering
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: Electrical Engineering
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: B.S. 2011, Biochemistry, Microbiology, University of Washington
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: Protocol Assimilation
-
: Auxin Synthetic Biology
+
: [[User:Bolten|more info]]  
: [[User:Bolten|more info]]  
|-
|-
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|[[Image:Shelly.jpg|100px]]
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|width="110px"|[[Image:Brettner.png|100px]]
 +
|
 +
: '''Leandra Brettner'''
 +
: BioEngineering
 +
: Synthetic Division of Labor Circuits
 +
: [[User:Brettner|more info]]
 +
|-
 +
 
 +
|-
 +
|width="110px"|[[Image:Miles.jpg |100px]]
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|
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: '''Miles Gander'''
 +
: Electrical Engineering
 +
: Auxin Synthetic Biology
 +
|-
 +
 
 +
|width="110px"|[[Image:Shelly.jpg|100px]]
|
|
: '''S. Shelly Jang'''
: '''S. Shelly Jang'''
-
: Graduate Student Research Assistant, Electrical Engineering
+
: Electrical Engineering
-
: Synthetic and Systems Biology
+
: Model Identification and Parameter Optimization
: [[User:Jang|more info]]  
: [[User:Jang|more info]]  
|-
|-
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|[[Image:Kevin.jpg|100px]]
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|width="110px"|[[Image:Kevin.jpg|100px]]
|
|
: '''Kevin Oishi'''
: '''Kevin Oishi'''
-
: Graduate Student Research Assistant, Electrical Engineering
+
: Electrical Engineering
-
: Synthetic Biology
+
: Technomimetic Synthetic Biology
: [[User:Oishi|more info]]  
: [[User:Oishi|more info]]  
|-
|-
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|[[Image:Takahashi.png|100px]]
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|width="110px"|[[Image:Rao.png|100px]]
 +
|
 +
: '''Sunny Rao'''
 +
: Electrical Engineering
 +
: Synthetic Biology Games
 +
: [[User:Rao|more info]]
 +
|-
 +
 
 +
|width="110px"|[[Image:Takahashi.png|100px]]
|
|
: '''Chris Takahashi'''
: '''Chris Takahashi'''
-
: Graduate Student Research Assistant, Electrical Engineering
+
: Electrical Engineering
: Cheap continuous culture devices
: Cheap continuous culture devices
: [[User:Takahashi|more info]]  
: [[User:Takahashi|more info]]  
|-
|-
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|[[Image:Yaoyu_new.jpg|100px]]
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|width="110px"|[[Image:Yaoyu_new.jpg|100px]]
|
|
-
 
: '''Yaoyu Yang'''
: '''Yaoyu Yang'''
-
: Graduate Student Research Assistant, Electrical Engineering
+
: Electrical Engineering
: Auxin Synthetic Biology
: Auxin Synthetic Biology
: [[User:Yang|more info]]  
: [[User:Yang|more info]]  
 +
|-
 +
 +
|width="110px"|[[Image:Younger.jpg|100px]]
 +
|
 +
: '''David Younger'''
 +
: Bioengineering (co-advised by David Baker)
 +
: Chimeric Receptors
 +
: [[User:Younger|more info]]
|}
|}
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== Visitors ==
== Visitors ==
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{| border=0 style="width: 100%"
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|[[Image:Marilsa_Cortesi.jpg|100px]]
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|width="110px"|[[Image:Khakhar.jpg|100px]]
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|
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: '''Marilisa Cortesi'''
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: '''Arjun Khakhar'''
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: Visiting from the University of Bologna
+
: Bioengineering rotation student
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: Synthetic multi-celled systems in E. coli
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: Synthetic Biology
-
: [[User:Cortesi|more info]]
+
-
|-
+
-
 
+
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|[[Image:Andrea_Samore.jpg|100px]]
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-
|
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: '''Andrea Samoré'''
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: Visiting from the University of Bologna
+
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: Simulation of multi-cell systems with gro
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-
: [[User:Samore|more info]]
+
|}
|}
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== Staff ==
== Staff ==
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{| border=0
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{| border=0 style="width: 100%"
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|[[Image:MichelleParks.jpg|100px]]
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|width="110px"|[[Image:MichelleParks.jpg|100px]]
|
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: '''Michelle Parks'''
: '''Michelle Parks'''
: Undergraduate Lab Assistant
: Undergraduate Lab Assistant
 +
: Biochemistry
 +
|-
 +
 +
|width="110px"|[[Image:McColl.jpg|100px]]
 +
|
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: '''Logan McColl'''
 +
: Undergraduate Lab Assistant
 +
: Biochemistry / Economics
|}
|}
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== Undergraduate Students ==
== Undergraduate Students ==
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{| border=0
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{| border=0 style="width: 100%"
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|-
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|width="110px"|[[Image:DavidZong.jpg|100px]]
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|[[Image:RahulBritoPic.jpg|100px]]
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|
|
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: '''Rahul Brito'''
+
: '''David Zong'''
: Bioengineering
: Bioengineering
-
: Synthetic Biology
+
: Engineered Microbial Communities
 +
 +
|}
 +
 +
== Former Lab Members ==
 +
 +
{| border=0 style="width:100%"
 +
 +
|width="110px"|[[Image:Rob.jpg|100px]]
 +
|
 +
: '''Rob Egbert'''
 +
: Graduate student, 2008-2012. Postdoctoral Scholar, 2012-2013.
 +
: Synthetic Biology
 +
: Now a postdoc a Berkeley / LBNL
|-
|-
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|[[Image:JamieChoe.jpg|100px]]
+
 
 +
|width="110px"|[[Image:Havens.jpg|100px]]
|
|
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: '''Jamie Choe'''
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: '''Kyle Havens'''
-
: Bioengineering
+
: Postdoctoral Scholar, 2010-2013.
-
: Auxin Synthetic Biology
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: Synthetic Biology
 +
: Now at [http://www.pregenen.com/ Pregenen].
 +
|-
 +
|width="110px"|[[Image:RahulBritoPic.jpg|100px]]
 +
|
 +
: '''Rahul Brito'''
 +
: B.S. Bioengineering, 2013
 +
: Synthetic Biology
|-
|-
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|[[Image:FelixEkness.jpg]]
+
 
 +
|width="110px"|[[Image:FelixEkness.jpg]]
|
|
: '''Felix Ekness'''
: '''Felix Ekness'''
-
: Bioengineering
+
: B.S. Bioengineering, 2013
: Continuous Culture Devices
: Continuous Culture Devices
-
 
+
: Now a graduate student with Jeff Tabor's group at Rice
|-
|-
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|[[Image:MilesGander.jpg]]
 
-
|
 
-
: '''Miles Gander'''
 
-
: Senior, ACMS / Biology, University of Washington
 
-
: Lab Assistant / Auxin Synthetic Biology
 
-
 
-
|-
 
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|[[Image:DavidZong.jpg]]
 
-
|
 
-
: '''David Zong'''
 
-
: Bioengineering
 
-
: Engineered Microbial Communities
 
-
 
-
 
-
|}
 
-
 
-
== Former Lab Members ==
 
-
 
-
{| border=0
 
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|[[Image:Josh_Bishop.jpg|100px]]
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|width="110px"|[[Image:Josh_Bishop.jpg|100px]]
|
|
: '''Josh Bishop'''
: '''Josh Bishop'''
: Ph.D. 2012
: Ph.D. 2012
: DNA Nanomachines, Biochemical Reaction Networks
: DNA Nanomachines, Biochemical Reaction Networks
-
: [[User:Bishop|more info]]
+
: Now a postdoc at the University of Washington
|-
|-
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|[[Image:Tammy.jpg|100px]]
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|width="110px"|[[Image:Tammy.jpg|100px]]
|
|
: '''Tammy Gu'''
: '''Tammy Gu'''
-
: Senior, Bioengineering, University of Washington
+
: B.S. Bioengineering, University of Washington, 2012
: Lab Assistant 2010-2012
: Lab Assistant 2010-2012
: Now at [http://www.nanostring.com/ Nanostring]
: Now at [http://www.nanostring.com/ Nanostring]
|-
|-
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|[[Image:Fay.png|100px]]
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|width="110px"|[[Image:Fay.png|100px]]
|
|
: '''Fay Shaw'''
: '''Fay Shaw'''
: Ph.D. 2011
: Ph.D. 2011
-
: [[User:Shaw|more info]]  
+
: Now at [http://www.bitwiseetextiles.com/about.html Bitwise E-textiles] and [http://www.playworksstudio.com/ Playworks Studio]
|-
|-
-
|[[Image:Nils_Napp.jpg|99px]]
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|width="110px"|[[Image:Nils_Napp.jpg|99px]]
|
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: '''Nils Napp'''
: '''Nils Napp'''
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|-
|-
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|[[Image:Angelina.jpg|100px]]
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|width="110px"|[[Image:Angelina.jpg|100px]]
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: '''Angelina Smith'''
: '''Angelina Smith'''
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|-
|-
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|[[Image:David.jpg|100px]]
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|width="110px"|[[Image:David.jpg|100px]]
|
|
: '''David Thorsley'''
: '''David Thorsley'''
: Postdoc 2006-2010
: Postdoc 2006-2010
: Stochastic processes, discrete event systems
: Stochastic processes, discrete event systems
-
: Now contractor at [http://www.bhsai.org/intro/ Bioinformatics Cell/BHSAI]
+
: Now at [http://www.immumetrix.com/ Immumetrix]
-
: U.S. Army Medical Research and Materiel Command, Ft. Detrick, Maryland
+
: [[User:Thorsley|more info]]
: [[User:Thorsley|more info]]
|-
|-
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|[[Image:Alex.jpg|100px]]
+
|width="110px"|[[Image:Alex.jpg|100px]]
|
|
: '''Alex Leone'''
: '''Alex Leone'''
: Junior, Physics, University of Washington
: Junior, Physics, University of Washington
: Robotic Self-Assembly, Synthetic Biology: Directed Evolution
: Robotic Self-Assembly, Synthetic Biology: Directed Evolution
-
: [http://students.washington.edu/acleone/about.html more info]
+
: Now at [http://www.extrahop.com/ ExtraHop]
|-
|-
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|[[Image:Alec_Nielsen.jpg|100px]]
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|width="110px"|[[Image:Alec_Nielsen.jpg|100px]]
|
|
: '''Alec Nielsen''' (Joint with Nemhauser)
: '''Alec Nielsen''' (Joint with Nemhauser)
: B.S. in BioE and CSE in 2010
: B.S. in BioE and CSE in 2010
: Auxin Synthetic Biology
: Auxin Synthetic Biology
-
: Now a graduate student at UCSF
+
: Now a [http://mit.edu/voigtlab/people.html graduate student at MIT]
|-
|-
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|[[Image:Brandi_House2.jpg|100px]]
+
|width="110px"|[[Image:Brandi_House2.jpg|100px]]
|
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: '''Brandi House'''
: '''Brandi House'''
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|-
|-
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|[[Image:Photo 25.jpg|100px]]
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|width="110px"|[[Image:Photo 25.jpg|100px]]
|
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: '''Daniel Georgiev'''
: '''Daniel Georgiev'''
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|-
|-
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|[[Image:JMHeadShotWeb-116.jpg |100px]]
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|width="110px"|[[Image:JMHeadShotWeb-116.jpg |100px]]
|
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: '''John-Michael McNew'''
: '''John-Michael McNew'''
Line 244: Line 269:
: Specification of Hybrid Networked Systems, Cooperative Control
: Specification of Hybrid Networked Systems, Cooperative Control
: Now at ''Toyota Research'', [[User:McNew|more info]]  
: Now at ''Toyota Research'', [[User:McNew|more info]]  
 +
|-
 +
 +
|width="110px"|[[Image:Burden.png |100px]]
 +
|
 +
: '''Sam Burden'''
 +
: B.S. in EE, 2008 Now a graduate student at U.C. Berkeley
 +
: Specification of Hybrid Networked Systems, Cooperative Control
 +
: Now a [http://www.eecs.berkeley.edu/~sburden/ graduate student at U.C. Berkeley]
 +
|-
 +
 +
|width="110px"|[[Image:Wolfe.png |100px]]
 +
|
 +
: '''Brian Wolfe'''
 +
: B.S. in EE, 2008
 +
: Synthetic Biology
 +
: Now a [http://www.piercelab.caltech.edu/people graduate student at Caltech]
|}
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<br>
<br>
-
* [[User:Burden|Sam Burden]] (B.S. in EE, 2008; Now a graduate student at U.C. Berkeley)
 
-
* Brian Wolfe (B.S. in EE, 2008; Now a graduate student at Caltech)
 
* Crystal Flores (Masters in EE, 2006)
* Crystal Flores (Masters in EE, 2006)
* William Malone (Masters in EE, 2005)
* William Malone (Masters in EE, 2005)

Revision as of 15:59, 10 October 2013

Principal Investigator

Eric Klavins
Associate Professor
more info

Postdocs

To apply for a position as a postdoctoral scholar, please send a cover letter, your CV, and your most recent synthetic biology paper to k.l.a.v.i.n.s[at]u.w[dot]e.d.u.

Graduate Students

Tileli Amimeur
Electrical Engineering
Protocol Assimilation
more info
Nick Bolten
Electrical Engineering
Protocol Assimilation
more info
Leandra Brettner
BioEngineering
Synthetic Division of Labor Circuits
more info
Miles Gander
Electrical Engineering
Auxin Synthetic Biology
S. Shelly Jang
Electrical Engineering
Model Identification and Parameter Optimization
more info
Kevin Oishi
Electrical Engineering
Technomimetic Synthetic Biology
more info
Sunny Rao
Electrical Engineering
Synthetic Biology Games
more info
Chris Takahashi
Electrical Engineering
Cheap continuous culture devices
more info
Yaoyu Yang
Electrical Engineering
Auxin Synthetic Biology
more info
David Younger
Bioengineering (co-advised by David Baker)
Chimeric Receptors
more info

Visitors

Image:Khakhar.jpg
Arjun Khakhar
Bioengineering rotation student
Synthetic Biology

Staff

Michelle Parks
Undergraduate Lab Assistant
Biochemistry
Image:McColl.jpg
Logan McColl
Undergraduate Lab Assistant
Biochemistry / Economics

Undergraduate Students

David Zong
Bioengineering
Engineered Microbial Communities


Former Lab Members

Rob Egbert
Graduate student, 2008-2012. Postdoctoral Scholar, 2012-2013.
Synthetic Biology
Now a postdoc a Berkeley / LBNL
Kyle Havens
Postdoctoral Scholar, 2010-2013.
Synthetic Biology
Now at Pregenen.
Rahul Brito
B.S. Bioengineering, 2013
Synthetic Biology
Image:FelixEkness.jpg
Felix Ekness
B.S. Bioengineering, 2013
Continuous Culture Devices
Now a graduate student with Jeff Tabor's group at Rice
Josh Bishop
Ph.D. 2012
DNA Nanomachines, Biochemical Reaction Networks
Now a postdoc at the University of Washington
Tammy Gu
B.S. Bioengineering, University of Washington, 2012
Lab Assistant 2010-2012
Now at Nanostring
Fay Shaw
Ph.D. 2011
Now at Bitwise E-textiles and Playworks Studio
Nils Napp
Ph.D. 2011
more info
Now a postdoc at Harvard
Angelina Smith
Lab Assistant 2008-2010
Now at Inbios International
David Thorsley
Postdoc 2006-2010
Stochastic processes, discrete event systems
Now at Immumetrix
more info
Alex Leone
Junior, Physics, University of Washington
Robotic Self-Assembly, Synthetic Biology: Directed Evolution
Now at ExtraHop
Alec Nielsen (Joint with Nemhauser)
B.S. in BioE and CSE in 2010
Auxin Synthetic Biology
Now a graduate student at MIT
Brandi House
Masters Degree, 2009
Auxin Synthetic Biology
Now works at Bungie
Daniel Georgiev
Postdoc, 2007-2009
Biological set-point regulation, networked control systems
Now at University of West Bohemia
John-Michael McNew
Ph.D. 2008
Specification of Hybrid Networked Systems, Cooperative Control
Now at Toyota Research, more info
Sam Burden
B.S. in EE, 2008 Now a graduate student at U.C. Berkeley
Specification of Hybrid Networked Systems, Cooperative Control
Now a graduate student at U.C. Berkeley
Brian Wolfe
B.S. in EE, 2008
Synthetic Biology
Now a graduate student at Caltech


  • Crystal Flores (Masters in EE, 2006)
  • William Malone (Masters in EE, 2005)

Undergraduate Projects: Melissa Ho (Auxin Synthetic Biology); Margaret Odom (Auxin Synthetic Biology); Ken Lo (Turbidostat); Ernest Doeleman, Fedja Karalic, Yevgeniy Maksimenko, Alida Mendes (Turbidostat); Yi-Wei Li (Robotic Chemistry); Stephen Day (Fast, Cheap Thermocycler); Sheldon Rucker (Robotic Chemistry); Michael McCourt (Robotic Chemistry), Yeu-Tzer Chou, Pascal Clark (Piezoelectric Microscope Stage); Stephen Kreiger, Amanda Horike (Programmable Parts); Daniel Nevistic, Ashwini Pai, Chris Takahashi (Automated GelBox); Mun A. Shin (DNA Reactions); Tian Xia (Piezoelectric Microscope Stage).