MORGAN Version 3.0.2 ./lm_pval Sat Aug 27 12:52:36 2011 === Parsing of parameter statements completed === Chromosome map .............. Inter-locus distances in cM, using Haldane map function: ---------------------------------------------------------------- 10.0 10.0 10.0 10.0 10.0 10.0 10.0 10.0 10.0 +------+------+------+------+------+------+------+------+------+ M1 M2 M3 M4 M5 M6 M7 M8 M9 M10 Marker allele frequencies: M1 .130 .660 .160 .050 M2 .060 .230 .410 .250 .050 M3 .110 .020 .010 .060 .240 .560 M4 .070 .040 .890 M5 .120 .110 .030 .030 .500 .210 M6 .500 .440 .060 M7 .010 .330 .620 .040 M8 .200 .050 .420 .270 .060 M9 .180 .180 .250 .160 .080 .150 M10 .170 .350 .040 .290 .150 Trait ..... Trait 1 Marker data: M1 M2 M3 M4 M5 M6 M7 M8 M9 M10 302 2 2 3 3 6 6 3 3 1 5 1 1 3 3 2 4 1 2 2 3 306 2 3 3 5 1 6 3 3 5 6 1 3 2 3 1 2 2 6 5 5 307 2 2 3 3 4 6 3 3 5 5 1 2 2 3 2 4 2 2 4 5 404 0 0 2 3 5 6 3 3 2 5 1 2 0 0 1 4 6 6 4 5 406 2 2 2 3 6 6 3 3 5 6 2 2 3 3 3 4 1 3 2 4 407 2 2 2 3 2 6 3 3 1 5 1 2 3 3 1 4 1 3 2 4 408 2 2 2 3 2 6 3 3 1 5 1 2 3 3 4 4 1 1 2 3 410 2 2 3 4 1 6 3 3 1 6 2 3 2 4 4 5 4 4 0 0 411 2 3 4 5 1 6 3 3 1 6 1 3 2 4 4 5 4 4 4 5 412 2 3 4 5 1 6 3 3 1 6 2 3 2 3 2 4 2 4 4 5 414 2 3 2 5 1 5 3 3 5 5 2 2 3 3 1 4 3 6 3 5 415 2 2 2 3 5 6 3 3 5 5 1 2 3 3 1 1 3 6 2 5 416 3 3 3 5 1 6 0 0 5 5 2 2 2 3 2 4 2 3 3 5 505 1 2 3 3 5 6 3 3 5 6 1 1 0 0 1 2 6 6 4 5 506 1 2 2 3 5 6 1 3 2 5 1 2 2 2 2 4 6 6 4 4 507 1 2 2 3 5 5 3 3 5 6 0 0 3 3 0 0 6 6 4 5 508 1 2 3 3 6 6 1 3 5 6 1 1 3 3 1 3 1 6 2 5 509 2 2 2 3 5 6 3 3 1 5 2 2 2 3 0 0 0 0 3 3 510 2 2 2 3 5 6 3 3 6 6 1 2 3 3 3 4 1 4 3 3 511 2 2 2 3 5 6 3 3 6 6 1 2 3 3 3 4 1 3 3 4 512 2 2 2 2 6 6 3 3 1 5 2 2 2 3 1 1 3 4 2 3 513 1 2 3 4 1 2 0 0 5 5 1 2 3 3 3 4 0 0 2 3 514 1 2 2 4 1 6 3 3 1 5 0 0 3 3 2 4 1 5 2 2 516 1 2 3 4 0 0 3 3 5 5 2 2 3 3 3 4 1 3 2 3 601 2 2 3 3 6 6 3 3 5 5 1 2 2 3 1 4 4 6 1 5 5150 1 2 2 5 5 6 3 3 3 5 2 2 0 0 3 4 1 1 1 1 602 2 3 2 3 1 6 3 3 3 5 2 2 0 0 4 4 1 1 1 2 1301 2 2 2 3 6 6 0 0 5 5 1 2 3 3 1 3 3 6 1 4 1302 2 2 2 3 6 6 3 3 5 5 1 2 3 3 1 3 5 6 4 5 1303 1 2 0 0 1 6 1 3 5 6 1 1 3 3 1 3 3 6 2 4 1304 2 3 2 3 5 6 3 3 5 6 2 3 3 4 0 0 3 6 2 5 1305 2 3 2 3 5 6 3 3 3 5 2 3 3 4 3 3 3 6 1 5 2301 2 2 3 4 6 6 1 3 5 5 2 2 3 3 1 4 1 3 2 2 2302 2 3 3 4 6 6 3 3 2 5 1 2 2 3 2 5 3 6 2 2 2306 2 2 3 3 6 6 3 3 5 6 2 2 3 3 3 5 1 2 2 2 2307 2 2 3 4 1 6 0 0 5 5 1 2 3 3 3 5 1 2 2 2 2308 2 2 4 4 1 6 3 3 5 5 1 2 3 3 3 5 1 3 2 4 2303 2 4 3 4 1 5 2 3 5 5 1 2 2 3 3 4 0 0 1 2 2304 1 2 4 4 1 1 0 0 3 5 1 2 2 3 3 4 0 0 1 2 2305 2 4 3 4 1 5 2 3 5 5 2 2 3 3 4 4 2 6 1 2 Trait data are genotypic Genotypic data at trait locus are to be read from integer 3 in the pedigree record Sequential imputation to be used for setup, using 200 samples Sampling is to be by scan, with scores estimated every scan L-sampler probability set to 0.200 The number of MC burn-in iterations is 200 Number of MC iterations requested is 2000 with progress checked every 400 iterations IBD statistics are to be computed measures: MaxFGL - yes Spairs - no Srobdom - no === Checking of parameter statements completed === Opened input pedigree file "../ped73.ped" 73 individuals read Pedigree component information: compnt size founders females males first 1 47 13 25 22 101 2 11 4 6 5 1101 3 15 5 7 8 2101 total 73 22 38 35 === Checking of pedigree file completed === Opened input pedigree file "../ped73.ped" Pedigree records contain: names, 7 integers, 1 real number The number of meiosis switches to sample is 99 compnt switches first last 1 65 1 65 2 14 66 79 3 20 80 99 Trait data: Component 1: genotype 2 2 (homozygous affected): 307 406 407 408 410 412 505 507 508 513 514 516 601 602 genotype 1 2 (heterozygote): 302 306 404 411 414 415 416 509 510 511 512 5150 genotype 1 1 (homozygous normal): 506 Component 2: genotype 2 2 (homozygous affected): 1303 1304 genotype 1 2 (heterozygote): 1301 1302 1305 Component 3: genotype 2 2 (homozygous affected): 2301 2302 2306 2307 2308 genotype 1 2 (heterozygote): 2303 2305 genotype 1 1 (homozygous normal): 2304 Now set 26 affected and 0 unaffected in component 1 Now set 5 affected and 0 unaffected in component 2 Now set 7 affected and 0 unaffected in component 3 Genetic variables in the analysis: index name type 1 marker-1 geno-marker 2 marker-2 geno-marker 3 marker-3 geno-marker 4 marker-4 geno-marker 5 marker-5 geno-marker 6 marker-6 geno-marker 7 marker-7 geno-marker 8 marker-8 geno-marker 9 marker-9 geno-marker 10 marker-10 geno-marker Hexadecimal sampler seeds: 0x57b850c5 0xdd6dd18e Now print null quantiles Quantiles at 1/1000 from 2000 realizations to be printed at intervals of 100 0 6.0 4.0 4.0 4.0 4.0 4.0 4.0 4.0 4.0 4.0 4.0 100 8.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 5.0 6.0 200 9.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 300 9.0 7.0 7.0 7.0 7.0 7.0 7.0 7.0 7.0 7.0 7.0 400 10.0 7.0 7.0 7.0 7.0 7.0 7.0 7.0 7.0 7.0 7.0 500 10.0 7.0 7.0 7.0 7.0 7.0 7.0 7.0 7.0 7.0 7.0 600 11.0 8.0 8.0 8.0 8.0 8.0 8.0 8.0 8.0 8.0 8.0 700 11.0 8.0 8.0 8.0 8.0 8.0 8.0 9.0 8.0 8.0 8.0 800 12.0 9.0 9.0 9.0 9.0 9.0 9.0 9.0 9.0 9.0 9.0 900 13.0 10.0 10.0 10.0 11.0 10.0 11.0 11.0 11.0 11.0 11.0 1000 19.0 17.0 17.0 18.0 17.0 16.0 19.0 18.0 17.0 17.0 16.0 Now print merged null quantiles Quantiles at 1/1000 from 2000 realizations to be printed at intervals of 100 0 6.0 4.0 4.0 4.0 4.0 4.0 4.0 4.0 4.0 4.0 4.0 100 8.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 200 9.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 300 9.0 7.0 7.0 7.0 7.0 7.0 7.0 7.0 7.0 7.0 7.0 400 10.0 7.0 7.0 7.0 7.0 7.0 7.0 7.0 7.0 7.0 7.0 500 10.0 7.0 7.0 7.0 7.0 7.0 7.0 7.0 7.0 7.0 7.0 600 11.0 8.0 8.0 8.0 8.0 8.0 8.0 8.0 8.0 8.0 8.0 700 11.0 8.0 8.0 8.0 8.0 8.0 8.0 8.0 8.0 8.0 8.0 800 12.0 9.0 9.0 9.0 9.0 9.0 9.0 9.0 9.0 9.0 9.0 900 13.0 11.0 11.0 11.0 11.0 11.0 11.0 11.0 11.0 11.0 11.0 1000 19.0 17.0 17.0 17.0 17.0 17.0 17.0 17.0 17.0 17.0 17.0 === Setup for MCMC completed === === Inheritance indicators initialized using sequential imputation === === MCMC sampling begun === Now starting 200 iterations of burn-in Now starting 2000 main MCMC iterations Starting M-sampler iteration 400 Starting L-sampler iteration 800 Starting M-sampler iteration 1200 Starting M-sampler iteration 1600 Starting M-sampler iteration 2000 === MCMC sampling completed === Values of expectation statistics, max and by locus 9.127 7.253 6.989 7.169 7.149 6.885 6.885 7.098 6.810 7.236 6.765 Combined distribution of fuzzy p-values, by locus: pval maxim marker-1 marker-2 marker-3 marker-4 marker-5 marker-6 marker-7 marker-8 marker-9 marker-10 0.00 0.000 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.01 0.001 0.004 0.000 0.000 0.000 0.000 0.000 0.001 0.000 0.000 0.000 0.02 0.001 0.009 0.002 0.001 0.002 0.000 0.000 0.006 0.000 0.000 0.000 0.03 0.002 0.013 0.004 0.003 0.004 0.000 0.000 0.011 0.000 0.000 0.000 0.04 0.003 0.020 0.005 0.005 0.011 0.001 0.003 0.017 0.000 0.000 0.000 0.05 0.004 0.027 0.007 0.008 0.018 0.001 0.005 0.023 0.000 0.000 0.000 0.06 0.005 0.032 0.009 0.013 0.023 0.002 0.006 0.029 0.000 0.000 0.000 0.07 0.006 0.036 0.012 0.018 0.026 0.002 0.007 0.033 0.000 0.000 0.000 0.08 0.008 0.040 0.014 0.023 0.029 0.002 0.008 0.038 0.000 0.000 0.000 0.09 0.011 0.043 0.016 0.029 0.033 0.002 0.009 0.042 0.000 0.000 0.000 0.10 0.014 0.047 0.019 0.034 0.036 0.002 0.010 0.047 0.000 0.000 0.000 0.11 0.016 0.054 0.026 0.039 0.041 0.004 0.014 0.054 0.001 0.001 0.000 0.12 0.019 0.062 0.033 0.044 0.047 0.006 0.018 0.062 0.002 0.002 0.000 0.13 0.022 0.069 0.040 0.049 0.052 0.008 0.022 0.070 0.004 0.003 0.000 0.14 0.025 0.076 0.047 0.053 0.057 0.010 0.026 0.077 0.005 0.005 0.000 0.15 0.028 0.084 0.055 0.058 0.062 0.012 0.030 0.085 0.006 0.006 0.000 0.16 0.033 0.091 0.062 0.063 0.068 0.014 0.034 0.092 0.008 0.007 0.000 0.17 0.038 0.098 0.069 0.068 0.073 0.016 0.038 0.100 0.009 0.008 0.000 0.18 0.043 0.107 0.078 0.073 0.080 0.028 0.048 0.106 0.014 0.014 0.000 0.19 0.048 0.117 0.089 0.078 0.090 0.043 0.060 0.113 0.021 0.023 0.000 0.20 0.053 0.127 0.100 0.084 0.099 0.058 0.071 0.120 0.027 0.031 0.000 0.21 0.057 0.137 0.111 0.090 0.108 0.073 0.083 0.127 0.034 0.039 0.000 0.22 0.062 0.148 0.122 0.096 0.118 0.089 0.095 0.134 0.040 0.047 0.000 0.23 0.067 0.158 0.133 0.101 0.127 0.104 0.106 0.141 0.047 0.055 0.000 0.24 0.072 0.168 0.144 0.107 0.136 0.119 0.118 0.149 0.053 0.063 0.000 0.25 0.077 0.178 0.155 0.113 0.146 0.134 0.130 0.156 0.060 0.071 0.000 0.26 0.082 0.188 0.166 0.119 0.155 0.150 0.141 0.163 0.066 0.079 0.000 0.27 0.087 0.199 0.177 0.124 0.164 0.165 0.153 0.170 0.073 0.087 0.000 0.28 0.091 0.209 0.188 0.130 0.174 0.180 0.165 0.177 0.079 0.095 0.000 0.29 0.096 0.219 0.199 0.136 0.183 0.195 0.176 0.184 0.086 0.103 0.000 0.30 0.101 0.228 0.209 0.147 0.193 0.204 0.185 0.192 0.096 0.119 0.001 0.31 0.105 0.237 0.218 0.159 0.203 0.211 0.193 0.199 0.107 0.136 0.002 0.32 0.110 0.246 0.227 0.170 0.213 0.219 0.201 0.206 0.117 0.153 0.003 0.33 0.114 0.255 0.237 0.182 0.223 0.227 0.209 0.213 0.128 0.170 0.004 0.34 0.119 0.265 0.246 0.193 0.233 0.234 0.218 0.221 0.138 0.187 0.005 0.35 0.123 0.274 0.255 0.205 0.243 0.242 0.226 0.228 0.149 0.204 0.006 0.36 0.128 0.283 0.265 0.217 0.253 0.250 0.234 0.235 0.160 0.221 0.007 0.37 0.132 0.292 0.274 0.228 0.263 0.257 0.242 0.243 0.170 0.238 0.008 0.38 0.137 0.301 0.283 0.240 0.273 0.265 0.250 0.250 0.181 0.255 0.009 0.39 0.142 0.310 0.292 0.251 0.283 0.272 0.259 0.257 0.192 0.272 0.009 0.40 0.146 0.319 0.302 0.263 0.293 0.280 0.267 0.265 0.202 0.289 0.010 0.41 0.151 0.328 0.311 0.275 0.303 0.288 0.275 0.272 0.213 0.306 0.011 0.42 0.158 0.337 0.320 0.286 0.313 0.295 0.283 0.279 0.223 0.323 0.012 0.43 0.166 0.346 0.330 0.298 0.323 0.303 0.291 0.286 0.234 0.340 0.013 0.44 0.175 0.356 0.339 0.310 0.333 0.311 0.300 0.294 0.245 0.357 0.014 0.45 0.183 0.365 0.348 0.321 0.343 0.318 0.308 0.301 0.255 0.374 0.015 0.46 0.192 0.374 0.357 0.333 0.353 0.326 0.316 0.308 0.266 0.391 0.016 0.47 0.200 0.383 0.367 0.344 0.363 0.333 0.324 0.316 0.276 0.408 0.017 0.48 0.209 0.392 0.376 0.356 0.372 0.341 0.333 0.323 0.287 0.425 0.017 0.49 0.217 0.397 0.380 0.361 0.377 0.345 0.337 0.328 0.293 0.432 0.034 0.50 0.225 0.406 0.388 0.370 0.386 0.354 0.346 0.339 0.305 0.445 0.067 0.51 0.234 0.416 0.396 0.379 0.395 0.362 0.355 0.350 0.318 0.458 0.100 0.52 0.242 0.425 0.404 0.388 0.404 0.371 0.364 0.361 0.330 0.471 0.133 0.53 0.251 0.434 0.411 0.398 0.412 0.379 0.373 0.372 0.342 0.484 0.166 0.54 0.259 0.444 0.419 0.407 0.421 0.387 0.383 0.382 0.354 0.497 0.200 0.55 0.267 0.453 0.427 0.416 0.430 0.396 0.392 0.393 0.367 0.510 0.233 0.56 0.276 0.463 0.435 0.425 0.439 0.404 0.401 0.404 0.379 0.523 0.266 0.57 0.284 0.472 0.443 0.435 0.448 0.413 0.410 0.415 0.391 0.536 0.299 0.58 0.293 0.482 0.451 0.444 0.457 0.421 0.419 0.426 0.403 0.549 0.332 0.59 0.301 0.491 0.459 0.453 0.466 0.430 0.428 0.436 0.416 0.563 0.365 0.60 0.309 0.501 0.466 0.462 0.475 0.438 0.437 0.447 0.428 0.576 0.398 0.61 0.318 0.510 0.474 0.472 0.483 0.447 0.446 0.458 0.440 0.589 0.431 0.62 0.334 0.519 0.482 0.481 0.492 0.455 0.455 0.469 0.453 0.602 0.464 0.63 0.350 0.529 0.490 0.490 0.501 0.463 0.464 0.480 0.465 0.615 0.498 0.64 0.367 0.538 0.498 0.499 0.510 0.472 0.473 0.490 0.477 0.628 0.531 0.65 0.383 0.548 0.506 0.509 0.519 0.480 0.483 0.501 0.489 0.641 0.564 0.66 0.399 0.557 0.514 0.518 0.528 0.489 0.492 0.512 0.502 0.654 0.597 0.67 0.415 0.567 0.522 0.527 0.537 0.497 0.501 0.523 0.514 0.667 0.630 0.68 0.431 0.576 0.529 0.536 0.546 0.506 0.510 0.534 0.526 0.681 0.663 0.69 0.448 0.586 0.537 0.546 0.555 0.514 0.519 0.544 0.538 0.694 0.696 0.70 0.464 0.595 0.545 0.555 0.563 0.523 0.528 0.555 0.551 0.707 0.729 0.71 0.480 0.604 0.553 0.564 0.572 0.531 0.537 0.566 0.563 0.720 0.762 0.72 0.496 0.611 0.559 0.571 0.579 0.537 0.544 0.574 0.572 0.729 0.786 0.73 0.513 0.623 0.569 0.593 0.595 0.550 0.556 0.587 0.586 0.742 0.795 0.74 0.529 0.635 0.579 0.615 0.612 0.564 0.568 0.601 0.601 0.754 0.804 0.75 0.545 0.646 0.590 0.637 0.628 0.577 0.580 0.614 0.616 0.767 0.813 0.76 0.561 0.658 0.600 0.659 0.645 0.590 0.593 0.628 0.631 0.780 0.823 0.77 0.577 0.670 0.610 0.682 0.662 0.604 0.605 0.642 0.646 0.793 0.832 0.78 0.594 0.682 0.621 0.704 0.678 0.617 0.617 0.655 0.661 0.805 0.841 0.79 0.610 0.694 0.631 0.726 0.695 0.630 0.630 0.669 0.676 0.818 0.850 0.80 0.626 0.705 0.642 0.748 0.711 0.644 0.642 0.683 0.691 0.831 0.860 0.81 0.642 0.717 0.652 0.771 0.728 0.657 0.654 0.696 0.706 0.843 0.869 0.82 0.661 0.729 0.662 0.793 0.745 0.670 0.667 0.710 0.721 0.856 0.878 0.83 0.679 0.741 0.673 0.815 0.761 0.683 0.679 0.723 0.736 0.869 0.887 0.84 0.696 0.752 0.683 0.837 0.778 0.697 0.691 0.737 0.751 0.882 0.897 0.85 0.714 0.764 0.694 0.860 0.794 0.710 0.704 0.751 0.766 0.894 0.906 0.86 0.731 0.776 0.704 0.882 0.811 0.723 0.716 0.764 0.781 0.907 0.915 0.87 0.749 0.788 0.714 0.904 0.828 0.737 0.728 0.778 0.796 0.920 0.924 0.88 0.766 0.800 0.725 0.926 0.844 0.750 0.741 0.792 0.811 0.932 0.934 0.89 0.784 0.811 0.735 0.949 0.861 0.763 0.753 0.805 0.826 0.945 0.943 0.90 0.801 0.823 0.746 0.971 0.877 0.777 0.765 0.819 0.841 0.958 0.952 0.91 0.819 0.835 0.756 0.993 0.894 0.790 0.777 0.833 0.856 0.970 0.962 0.92 0.836 0.851 0.780 0.994 0.903 0.811 0.799 0.849 0.870 0.973 0.965 0.93 0.854 0.872 0.810 0.995 0.915 0.837 0.827 0.870 0.888 0.977 0.970 0.94 0.872 0.892 0.840 0.995 0.926 0.863 0.854 0.890 0.906 0.981 0.975 0.95 0.889 0.912 0.870 0.996 0.938 0.889 0.882 0.911 0.924 0.984 0.980 0.96 0.912 0.933 0.901 0.997 0.950 0.914 0.909 0.932 0.941 0.988 0.984 0.97 0.934 0.953 0.931 0.998 0.961 0.940 0.936 0.952 0.959 0.991 0.989 0.98 0.957 0.974 0.961 0.999 0.973 0.966 0.964 0.973 0.977 0.995 0.994 0.99 0.979 0.994 0.991 1.000 0.985 0.992 0.991 0.994 0.995 0.998 0.999 Summary for component 1: Average total log-probability of segregations: for first locus (constant): -45.055 for each successive locus: -16.183 -18.627 -20.003 -22.429 -18.250 -23.005 -20.830 -15.267 -17.493 Average total log-probability of penetrances, by locus: marker-1 marker-2 marker-3 marker-4 marker-5 marker-6 marker-7 marker-8 marker-9 marker-10 -18.965 -27.709 -25.856 -4.875 -27.131 -18.761 -16.240 -40.344 -40.620 -37.303 Recombination counts for map intervals: males: females: total recomb non-rec total recomb non-rec 1, 2 66000 3501 62499 64000 5179 58821 2, 3 66000 6881 59119 64000 3919 60081 3, 4 66000 6021 59979 64000 5972 58028 4, 5 66000 8144 57856 64000 5953 58047 5, 6 66000 5143 60857 64000 5330 58670 6, 7 66000 7222 58778 64000 7375 56625 7, 8 66000 8866 57134 64000 3844 60156 8, 9 66000 3253 62747 64000 4632 59368 9, 10 66000 4368 61632 64000 5448 58552 Summary for component 2: Average total log-probability of segregations: for first locus (constant): -9.704 for each successive locus: -3.425 -3.254 -3.748 -4.942 -5.673 -3.559 -4.034 -4.788 -4.370 Average total log-probability of penetrances, by locus: marker-1 marker-2 marker-3 marker-4 marker-5 marker-6 marker-7 marker-8 marker-9 marker-10 -4.729 -3.542 -5.016 -2.916 -7.624 -5.426 -5.006 -5.414 -10.217 -9.737 Recombination counts for map intervals: males: females: total recomb non-rec total recomb non-rec 1, 2 14000 980 13020 14000 837 13163 2, 3 14000 906 13094 14000 763 13237 3, 4 14000 971 13029 14000 1126 12874 4, 5 14000 1182 12818 14000 1951 12049 5, 6 14000 1379 12621 14000 2388 11612 6, 7 14000 898 13102 14000 1035 12965 7, 8 14000 962 13038 14000 1383 12617 8, 9 14000 1512 12488 14000 1487 12513 9, 10 14000 911 13089 14000 1726 12274 Summary for component 3: Average total log-probability of segregations: for first locus (constant): -13.863 for each successive locus: -5.643 -5.307 -5.402 -5.223 -6.920 -5.784 -5.725 -10.120 -6.123 Average total log-probability of penetrances, by locus: marker-1 marker-2 marker-3 marker-4 marker-5 marker-6 marker-7 marker-8 marker-9 marker-10 -8.951 -9.781 -10.221 -6.013 -11.042 -6.420 -5.164 -12.917 -11.322 -8.809 Recombination counts for map intervals: males: females: total recomb non-rec total recomb non-rec 1, 2 20000 1860 18140 20000 1386 18614 2, 3 20000 1261 18739 20000 1694 18306 3, 4 20000 1352 18648 20000 1685 18315 4, 5 20000 1217 18783 20000 1665 18335 5, 6 20000 1221 18779 20000 3133 16867 6, 7 20000 1676 18324 20000 1693 18307 7, 8 20000 1613 18387 20000 1704 18296 8, 9 20000 2440 17560 20000 4689 15311 9, 10 20000 1572 18428 20000 2091 17909 hostname: Elizabeth-Thompsons-MacBook-Pro.local system time: 0.000 sec user time: 7.750 sec elapsed time: 0 hr 0 min 8 sec