MORGAN Version 3.0.2 ./lm_pval Tue Sep 13 22:36:53 2011 === Parsing of parameter statements completed === Chromosome map .............. Inter-locus distances in cM, using Haldane map function: ---------------------------------------------------------------- 10.0 10.0 10.0 10.0 10.0 10.0 10.0 10.0 10.0 +------+------+------+------+------+------+------+------+------+ M1 M2 M3 M4 M5 M6 M7 M8 M9 M10 Marker allele frequencies: M1 .130 .660 .160 .050 M2 .060 .230 .410 .250 .050 M3 .110 .020 .010 .060 .240 .560 M4 .070 .040 .890 M5 .120 .110 .030 .030 .500 .210 M6 .500 .440 .060 M7 .010 .330 .620 .040 M8 .200 .050 .420 .270 .060 M9 .180 .180 .250 .160 .080 .150 M10 .170 .350 .040 .290 .150 Trait ..... Trait 1 Marker data: M1 M2 M3 M4 M5 M6 M7 M8 M9 M10 302 2 2 3 3 6 6 3 3 1 5 1 1 3 3 2 4 1 2 2 3 306 2 3 3 5 1 6 3 3 5 6 1 3 2 3 1 2 2 6 5 5 307 2 2 3 3 4 6 3 3 5 5 1 2 2 3 2 4 2 2 4 5 404 0 0 2 3 5 6 3 3 2 5 1 2 0 0 1 4 6 6 4 5 406 2 2 2 3 6 6 3 3 5 6 2 2 3 3 3 4 1 3 2 4 407 2 2 2 3 2 6 3 3 1 5 1 2 3 3 1 4 1 3 2 4 408 2 2 2 3 2 6 3 3 1 5 1 2 3 3 4 4 1 1 2 3 410 2 2 3 4 1 6 3 3 1 6 2 3 2 4 4 5 4 4 0 0 411 2 3 4 5 1 6 3 3 1 6 1 3 2 4 4 5 4 4 4 5 412 2 3 4 5 1 6 3 3 1 6 2 3 2 3 2 4 2 4 4 5 414 2 3 2 5 1 5 3 3 5 5 2 2 3 3 1 4 3 6 3 5 415 2 2 2 3 5 6 3 3 5 5 1 2 3 3 1 1 3 6 2 5 416 3 3 3 5 1 6 0 0 5 5 2 2 2 3 2 4 2 3 3 5 505 1 2 3 3 5 6 3 3 5 6 1 1 0 0 1 2 6 6 4 5 506 1 2 2 3 5 6 1 3 2 5 1 2 2 2 2 4 6 6 4 4 507 1 2 2 3 5 5 3 3 5 6 0 0 3 3 0 0 6 6 4 5 508 1 2 3 3 6 6 1 3 5 6 1 1 3 3 1 3 1 6 2 5 509 2 2 2 3 5 6 3 3 1 5 2 2 2 3 0 0 0 0 3 3 510 2 2 2 3 5 6 3 3 6 6 1 2 3 3 3 4 1 4 3 3 511 2 2 2 3 5 6 3 3 6 6 1 2 3 3 3 4 1 3 3 4 512 2 2 2 2 6 6 3 3 1 5 2 2 2 3 1 1 3 4 2 3 513 1 2 3 4 1 2 0 0 5 5 1 2 3 3 3 4 0 0 2 3 514 1 2 2 4 1 6 3 3 1 5 0 0 3 3 2 4 1 5 2 2 516 1 2 3 4 0 0 3 3 5 5 2 2 3 3 3 4 1 3 2 3 601 2 2 3 3 6 6 3 3 5 5 1 2 2 3 1 4 4 6 1 5 5150 1 2 2 5 5 6 3 3 3 5 2 2 0 0 3 4 1 1 1 1 602 2 3 2 3 1 6 3 3 3 5 2 2 0 0 4 4 1 1 1 2 1301 2 2 2 3 6 6 0 0 5 5 1 2 3 3 1 3 3 6 1 4 1302 2 2 2 3 6 6 3 3 5 5 1 2 3 3 1 3 5 6 4 5 1303 1 2 0 0 1 6 1 3 5 6 1 1 3 3 1 3 3 6 2 4 1304 2 3 2 3 5 6 3 3 5 6 2 3 3 4 0 0 3 6 2 5 1305 2 3 2 3 5 6 3 3 3 5 2 3 3 4 3 3 3 6 1 5 2301 2 2 3 4 6 6 1 3 5 5 2 2 3 3 1 4 1 3 2 2 2302 2 3 3 4 6 6 3 3 2 5 1 2 2 3 2 5 3 6 2 2 2306 2 2 3 3 6 6 3 3 5 6 2 2 3 3 3 5 1 2 2 2 2307 2 2 3 4 1 6 0 0 5 5 1 2 3 3 3 5 1 2 2 2 2308 2 2 4 4 1 6 3 3 5 5 1 2 3 3 3 5 1 3 2 4 2303 2 4 3 4 1 5 2 3 5 5 1 2 2 3 3 4 0 0 1 2 2304 1 2 4 4 1 1 0 0 3 5 1 2 2 3 3 4 0 0 1 2 2305 2 4 3 4 1 5 2 3 5 5 2 2 3 3 4 4 2 6 1 2 Trait data are genotypic Genotypic data at trait locus are to be read from integer 3 in the pedigree record Sequential imputation to be used for setup, using 200 samples Sampling is to be by scan, with scores estimated every scan L-sampler probability set to 0.200 The number of MC burn-in iterations is 200 Number of MC iterations requested is 2000 with progress checked every 400 iterations IBD statistics are to be computed measures: MaxFGL - yes Spairs - no Srobdom - no === Checking of parameter statements completed === Opened input pedigree file "../ped73.ped" 73 individuals read Pedigree component information: compnt size founders females males first 1 47 13 25 22 101 2 11 4 6 5 1101 3 15 5 7 8 2101 total 73 22 38 35 === Checking of pedigree file completed === Opened input pedigree file "../ped73.ped" Pedigree records contain: names, 7 integers, 1 real number The number of meiosis switches to sample is 99 compnt switches first last 1 65 1 65 2 14 66 79 3 20 80 99 Trait data: Component 1: genotype 2 2 (homozygous affected): 307 406 407 408 410 412 505 507 508 513 514 516 601 602 genotype 1 2 (heterozygote): 302 306 404 411 414 415 416 509 510 511 512 5150 genotype 1 1 (homozygous normal): 506 Component 2: genotype 2 2 (homozygous affected): 1303 1304 genotype 1 2 (heterozygote): 1301 1302 1305 Component 3: genotype 2 2 (homozygous affected): 2301 2302 2306 2307 2308 genotype 1 2 (heterozygote): 2303 2305 genotype 1 1 (homozygous normal): 2304 Now set 26 affected and 0 unaffected in component 1 Now set 5 affected and 0 unaffected in component 2 Now set 7 affected and 0 unaffected in component 3 Genetic variables in the analysis: index name type 1 marker-1 geno-marker 2 marker-2 geno-marker 3 marker-3 geno-marker 4 marker-4 geno-marker 5 marker-5 geno-marker 6 marker-6 geno-marker 7 marker-7 geno-marker 8 marker-8 geno-marker 9 marker-9 geno-marker 10 marker-10 geno-marker Hexadecimal sampler seeds: 0x525c1b41 0x744055e0 Now print null quantiles Quantiles at 1/1000 from 2000 realizations to be printed at intervals of 100 0 6.0 4.0 4.0 4.0 4.0 4.0 4.0 4.0 4.0 4.0 4.0 100 8.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 200 9.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 300 9.0 7.0 7.0 7.0 7.0 7.0 7.0 7.0 7.0 7.0 7.0 400 9.0 7.0 7.0 7.0 7.0 7.0 7.0 7.0 7.0 7.0 7.0 500 10.0 7.0 7.0 7.0 7.0 7.0 7.0 7.0 7.0 7.0 7.0 600 11.0 8.0 8.0 8.0 8.0 8.0 8.0 8.0 8.0 8.0 8.0 700 11.0 8.0 8.0 9.0 8.0 8.0 8.0 9.0 8.0 8.0 9.0 800 12.0 9.0 9.0 9.0 9.0 9.0 9.0 9.0 9.0 9.0 9.0 900 13.0 10.0 10.0 10.0 10.0 10.0 10.0 10.0 10.0 10.0 11.0 1000 20.0 17.0 16.0 16.0 18.0 17.0 17.0 20.0 19.0 17.0 17.0 Now print merged null quantiles Quantiles at 1/1000 from 2000 realizations to be printed at intervals of 100 0 6.0 4.0 4.0 4.0 4.0 4.0 4.0 4.0 4.0 4.0 4.0 100 8.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 200 9.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 300 9.0 7.0 7.0 7.0 7.0 7.0 7.0 7.0 7.0 7.0 7.0 400 9.0 7.0 7.0 7.0 7.0 7.0 7.0 7.0 7.0 7.0 7.0 500 10.0 7.0 7.0 7.0 7.0 7.0 7.0 7.0 7.0 7.0 7.0 600 11.0 8.0 8.0 8.0 8.0 8.0 8.0 8.0 8.0 8.0 8.0 700 11.0 8.0 8.0 8.0 8.0 8.0 8.0 8.0 8.0 8.0 8.0 800 12.0 9.0 9.0 9.0 9.0 9.0 9.0 9.0 9.0 9.0 9.0 900 13.0 10.0 10.0 10.0 10.0 10.0 10.0 10.0 10.0 10.0 10.0 1000 20.0 17.0 17.0 17.0 17.0 17.0 17.0 17.0 17.0 17.0 17.0 === Setup for MCMC completed === === Inheritance indicators initialized using sequential imputation === === MCMC sampling begun === Now starting 200 iterations of burn-in Now starting 2000 main MCMC iterations Starting M-sampler iteration 400 Starting L-sampler iteration 800 Starting L-sampler iteration 1200 Starting M-sampler iteration 1600 Starting M-sampler iteration 2000 === MCMC sampling completed === Values of expectation statistics, max and by locus 9.488 7.304 7.037 7.148 7.510 7.766 7.657 8.312 7.928 7.937 8.040 Combined distribution of fuzzy p-values, by locus: pval maxim marker-1 marker-2 marker-3 marker-4 marker-5 marker-6 marker-7 marker-8 marker-9 marker-10 0.00 0.000 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.01 0.002 0.006 0.000 0.002 0.001 0.001 0.000 0.003 0.000 0.000 0.000 0.02 0.003 0.010 0.000 0.004 0.002 0.001 0.000 0.011 0.000 0.000 0.000 0.03 0.005 0.015 0.000 0.005 0.005 0.002 0.000 0.019 0.000 0.000 0.000 0.04 0.007 0.020 0.000 0.006 0.011 0.008 0.001 0.028 0.000 0.000 0.000 0.05 0.009 0.026 0.000 0.008 0.017 0.013 0.001 0.036 0.000 0.000 0.001 0.06 0.011 0.031 0.001 0.011 0.022 0.018 0.002 0.040 0.000 0.000 0.001 0.07 0.014 0.036 0.001 0.013 0.028 0.023 0.002 0.045 0.000 0.000 0.002 0.08 0.016 0.041 0.002 0.015 0.033 0.028 0.003 0.049 0.000 0.000 0.003 0.09 0.020 0.046 0.002 0.018 0.039 0.033 0.004 0.053 0.000 0.000 0.003 0.10 0.023 0.052 0.006 0.021 0.046 0.041 0.005 0.062 0.000 0.000 0.006 0.11 0.027 0.058 0.010 0.023 0.054 0.051 0.007 0.073 0.000 0.000 0.009 0.12 0.030 0.065 0.015 0.026 0.062 0.060 0.008 0.085 0.000 0.000 0.012 0.13 0.033 0.071 0.020 0.029 0.070 0.070 0.010 0.096 0.000 0.000 0.015 0.14 0.037 0.077 0.024 0.032 0.078 0.080 0.011 0.107 0.000 0.000 0.018 0.15 0.041 0.083 0.029 0.035 0.086 0.090 0.013 0.118 0.000 0.000 0.021 0.16 0.045 0.090 0.034 0.038 0.094 0.100 0.014 0.129 0.000 0.000 0.024 0.17 0.049 0.097 0.042 0.042 0.104 0.112 0.022 0.145 0.000 0.000 0.032 0.18 0.054 0.107 0.056 0.048 0.115 0.127 0.040 0.168 0.001 0.000 0.046 0.19 0.058 0.117 0.069 0.054 0.127 0.142 0.058 0.190 0.002 0.001 0.060 0.20 0.062 0.127 0.083 0.060 0.139 0.157 0.077 0.213 0.003 0.001 0.074 0.21 0.067 0.137 0.096 0.066 0.150 0.172 0.095 0.235 0.004 0.001 0.088 0.22 0.071 0.146 0.110 0.072 0.162 0.188 0.113 0.258 0.005 0.002 0.102 0.23 0.076 0.156 0.123 0.077 0.174 0.203 0.131 0.281 0.005 0.002 0.116 0.24 0.080 0.166 0.137 0.083 0.185 0.218 0.149 0.303 0.006 0.002 0.130 0.25 0.084 0.176 0.151 0.089 0.197 0.233 0.167 0.326 0.007 0.002 0.144 0.26 0.090 0.186 0.164 0.095 0.209 0.248 0.185 0.348 0.008 0.003 0.158 0.27 0.095 0.195 0.178 0.101 0.220 0.264 0.203 0.371 0.009 0.003 0.172 0.28 0.100 0.205 0.191 0.107 0.232 0.279 0.221 0.393 0.010 0.003 0.186 0.29 0.106 0.215 0.205 0.113 0.244 0.294 0.240 0.416 0.011 0.003 0.200 0.30 0.111 0.225 0.215 0.126 0.255 0.308 0.257 0.434 0.059 0.053 0.233 0.31 0.116 0.234 0.225 0.139 0.266 0.322 0.274 0.451 0.107 0.103 0.267 0.32 0.122 0.244 0.235 0.152 0.277 0.336 0.292 0.469 0.156 0.152 0.301 0.33 0.127 0.254 0.245 0.164 0.288 0.350 0.309 0.487 0.204 0.202 0.335 0.34 0.133 0.264 0.254 0.177 0.299 0.364 0.326 0.504 0.253 0.251 0.368 0.35 0.138 0.273 0.264 0.190 0.310 0.378 0.344 0.522 0.301 0.301 0.402 0.36 0.143 0.283 0.274 0.203 0.321 0.392 0.361 0.540 0.350 0.350 0.436 0.37 0.149 0.293 0.284 0.216 0.332 0.406 0.378 0.557 0.398 0.400 0.470 0.38 0.154 0.303 0.294 0.229 0.343 0.420 0.396 0.575 0.447 0.449 0.504 0.39 0.159 0.312 0.304 0.242 0.354 0.434 0.413 0.593 0.495 0.499 0.537 0.40 0.165 0.322 0.314 0.254 0.365 0.448 0.430 0.610 0.544 0.549 0.571 0.41 0.171 0.332 0.324 0.267 0.376 0.462 0.448 0.628 0.592 0.598 0.605 0.42 0.183 0.342 0.334 0.280 0.387 0.476 0.465 0.646 0.640 0.648 0.639 0.43 0.194 0.351 0.344 0.293 0.398 0.490 0.482 0.663 0.689 0.697 0.673 0.44 0.205 0.361 0.353 0.306 0.409 0.504 0.500 0.681 0.737 0.747 0.706 0.45 0.217 0.371 0.363 0.319 0.420 0.518 0.517 0.699 0.786 0.796 0.740 0.46 0.228 0.381 0.373 0.332 0.431 0.532 0.535 0.716 0.834 0.846 0.774 0.47 0.239 0.390 0.383 0.344 0.442 0.546 0.552 0.734 0.883 0.895 0.808 0.48 0.251 0.400 0.393 0.357 0.453 0.560 0.569 0.752 0.931 0.945 0.842 0.49 0.262 0.410 0.401 0.368 0.464 0.569 0.581 0.759 0.938 0.951 0.850 0.50 0.274 0.420 0.410 0.379 0.474 0.578 0.593 0.765 0.940 0.953 0.855 0.51 0.285 0.430 0.418 0.390 0.485 0.587 0.604 0.772 0.942 0.955 0.860 0.52 0.296 0.440 0.426 0.401 0.496 0.596 0.616 0.778 0.944 0.956 0.865 0.53 0.308 0.450 0.435 0.412 0.507 0.606 0.627 0.784 0.947 0.958 0.870 0.54 0.319 0.460 0.443 0.423 0.517 0.615 0.638 0.790 0.949 0.959 0.876 0.55 0.330 0.470 0.451 0.434 0.528 0.624 0.650 0.796 0.951 0.961 0.881 0.56 0.342 0.480 0.460 0.445 0.539 0.633 0.661 0.803 0.953 0.962 0.886 0.57 0.353 0.490 0.468 0.456 0.550 0.642 0.673 0.809 0.955 0.964 0.891 0.58 0.365 0.500 0.476 0.467 0.560 0.651 0.684 0.815 0.957 0.966 0.896 0.59 0.376 0.510 0.485 0.478 0.571 0.660 0.696 0.821 0.959 0.967 0.902 0.60 0.393 0.520 0.493 0.489 0.582 0.669 0.707 0.828 0.962 0.969 0.907 0.61 0.412 0.530 0.501 0.499 0.593 0.678 0.718 0.834 0.964 0.970 0.912 0.62 0.430 0.540 0.510 0.510 0.603 0.687 0.730 0.840 0.966 0.972 0.917 0.63 0.449 0.550 0.518 0.521 0.614 0.697 0.741 0.846 0.968 0.973 0.922 0.64 0.467 0.560 0.526 0.532 0.625 0.706 0.753 0.853 0.970 0.975 0.928 0.65 0.486 0.570 0.535 0.543 0.636 0.715 0.764 0.859 0.972 0.977 0.933 0.66 0.504 0.580 0.543 0.554 0.647 0.724 0.775 0.865 0.975 0.978 0.938 0.67 0.523 0.590 0.551 0.565 0.657 0.733 0.787 0.871 0.977 0.980 0.943 0.68 0.541 0.600 0.560 0.576 0.668 0.742 0.798 0.877 0.979 0.981 0.948 0.69 0.560 0.610 0.568 0.587 0.679 0.751 0.810 0.884 0.981 0.983 0.954 0.70 0.578 0.620 0.576 0.598 0.690 0.760 0.821 0.890 0.983 0.984 0.959 0.71 0.596 0.630 0.585 0.609 0.700 0.769 0.833 0.896 0.985 0.986 0.964 0.72 0.615 0.640 0.594 0.624 0.711 0.778 0.841 0.901 0.986 0.987 0.967 0.73 0.633 0.652 0.605 0.643 0.724 0.789 0.849 0.906 0.987 0.987 0.968 0.74 0.652 0.663 0.617 0.662 0.736 0.800 0.856 0.911 0.987 0.988 0.970 0.75 0.670 0.675 0.628 0.681 0.749 0.811 0.864 0.916 0.988 0.988 0.972 0.76 0.689 0.686 0.639 0.700 0.762 0.822 0.872 0.921 0.988 0.989 0.974 0.77 0.707 0.698 0.651 0.720 0.774 0.832 0.880 0.926 0.989 0.989 0.975 0.78 0.726 0.709 0.662 0.739 0.787 0.843 0.888 0.931 0.989 0.990 0.977 0.79 0.744 0.721 0.674 0.758 0.799 0.854 0.896 0.936 0.990 0.991 0.979 0.80 0.763 0.732 0.685 0.777 0.812 0.865 0.903 0.941 0.990 0.991 0.981 0.81 0.781 0.744 0.696 0.797 0.825 0.876 0.911 0.946 0.991 0.992 0.982 0.82 0.799 0.755 0.708 0.816 0.837 0.886 0.919 0.950 0.991 0.992 0.984 0.83 0.814 0.767 0.719 0.835 0.850 0.897 0.927 0.955 0.992 0.993 0.986 0.84 0.829 0.778 0.731 0.854 0.862 0.908 0.935 0.960 0.992 0.993 0.988 0.85 0.844 0.790 0.742 0.874 0.875 0.919 0.943 0.965 0.993 0.994 0.989 0.86 0.859 0.801 0.753 0.893 0.888 0.929 0.951 0.970 0.993 0.994 0.991 0.87 0.874 0.813 0.765 0.912 0.900 0.940 0.958 0.975 0.994 0.995 0.993 0.88 0.889 0.824 0.776 0.931 0.913 0.951 0.966 0.980 0.994 0.995 0.995 0.89 0.904 0.836 0.788 0.951 0.926 0.962 0.974 0.985 0.995 0.996 0.996 0.90 0.919 0.847 0.799 0.970 0.938 0.973 0.982 0.990 0.995 0.996 0.998 0.91 0.934 0.859 0.810 0.989 0.951 0.983 0.990 0.995 0.996 0.997 1.000 0.92 0.949 0.877 0.834 0.992 0.957 0.986 0.992 0.996 0.996 0.997 1.000 0.93 0.964 0.893 0.856 0.993 0.963 0.988 0.993 0.997 0.997 0.998 1.000 0.94 0.979 0.910 0.879 0.994 0.968 0.990 0.994 0.997 0.997 0.998 1.000 0.95 0.994 0.927 0.901 0.995 0.973 0.992 0.995 0.998 0.998 0.998 1.000 0.96 1.000 0.943 0.924 0.996 0.978 0.994 0.996 0.998 0.998 0.999 1.000 0.97 1.000 0.960 0.946 0.997 0.984 0.996 0.997 0.999 0.999 0.999 1.000 0.98 1.000 0.977 0.969 0.998 0.989 0.997 0.998 0.999 0.999 0.999 1.000 0.99 1.000 0.993 0.991 0.999 0.994 0.999 1.000 1.000 1.000 1.000 1.000 Summary for component 1: Average total log-probability of segregations: for first locus (constant): -45.055 for each successive locus: -16.283 -17.965 -17.831 -20.008 -19.629 -25.286 -21.976 -15.773 -16.813 Average total log-probability of penetrances, by locus: marker-1 marker-2 marker-3 marker-4 marker-5 marker-6 marker-7 marker-8 marker-9 marker-10 -18.894 -27.602 -25.699 -4.863 -26.361 -18.682 -15.657 -38.548 -39.105 -37.491 Recombination counts for map intervals: males: females: total recomb non-rec total recomb non-rec 1, 2 66000 3541 62459 64000 5226 58774 2, 3 66000 6930 59070 64000 3295 60705 3, 4 66000 4389 61611 64000 5720 58280 4, 5 66000 6376 59624 64000 5621 58379 5, 6 66000 4802 61198 64000 6867 57133 6, 7 66000 8284 57716 64000 8291 55709 7, 8 66000 9304 56696 64000 4400 59600 8, 9 66000 3238 62762 64000 5086 58914 9, 10 66000 5286 60714 64000 3940 60060 Summary for component 2: Average total log-probability of segregations: for first locus (constant): -9.704 for each successive locus: -3.396 -3.385 -3.795 -4.927 -5.756 -3.599 -4.139 -4.879 -4.486 Average total log-probability of penetrances, by locus: marker-1 marker-2 marker-3 marker-4 marker-5 marker-6 marker-7 marker-8 marker-9 marker-10 -4.763 -3.581 -5.035 -2.929 -7.604 -5.394 -4.992 -5.435 -10.277 -9.790 Recombination counts for map intervals: males: females: total recomb non-rec total recomb non-rec 1, 2 14000 978 13022 14000 814 13186 2, 3 14000 995 13005 14000 787 13213 3, 4 14000 1070 12930 14000 1068 12932 4, 5 14000 1213 12787 14000 1907 12093 5, 6 14000 1569 12431 14000 2270 11730 6, 7 14000 959 13041 14000 1009 12991 7, 8 14000 1136 12864 14000 1300 12700 8, 9 14000 1624 12376 14000 1454 12546 9, 10 14000 1075 12925 14000 1662 12338 Summary for component 3: Average total log-probability of segregations: for first locus (constant): -13.863 for each successive locus: -5.719 -5.465 -5.659 -5.510 -6.879 -5.766 -5.633 -9.836 -6.042 Average total log-probability of penetrances, by locus: marker-1 marker-2 marker-3 marker-4 marker-5 marker-6 marker-7 marker-8 marker-9 marker-10 -8.950 -9.694 -9.997 -6.064 -11.036 -6.412 -5.228 -13.020 -11.348 -8.752 Recombination counts for map intervals: males: females: total recomb non-rec total recomb non-rec 1, 2 20000 1882 18118 20000 1430 18570 2, 3 20000 1449 18551 20000 1643 18357 3, 4 20000 1613 18387 20000 1647 18353 4, 5 20000 1394 18606 20000 1737 18263 5, 6 20000 1325 18675 20000 2993 17007 6, 7 20000 1673 18327 20000 1680 18320 7, 8 20000 1519 18481 20000 1719 18281 8, 9 20000 2466 17534 20000 4417 15583 9, 10 20000 1687 18313 20000 1905 18095 hostname: Elizabeth-Thompsons-MacBook-Pro.local system time: 0.000 sec user time: 7.740 sec elapsed time: 0 hr 0 min 8 sec