Publications

2018

Joscha Nehrkorn, Sergey L. Veber, Liudmila A. Zhukas, Valentin V. Novikov, Yulia V. Nelyubina, Yan Z. Voloshin, Karsten Holldack, Stefan Stoll, and Alexander Schnegg
Determination of Large Zero-Field Splitting in High-Spin Co(I) Clathrochelates
Inorg. Chem., (2018)
DOI:
10.1021/acs.inorgchem.8b02670

Ryan Toivola, Sei-Hum Jang, Donald Mannikko, Stefan Stoll, Alex K.-Y. Jen, Brian D. Flinn
Mechanochemical changes in absorption and fluorescence of DDM-containing epoxies
Polymer, 142, 132-143 (2018)
DOI: 10.1016/j.polymer.2018.03.029

Ryan Toivola, Sei-Hum Jang, Donald Mannikko, Stefan Stoll, Alex K.-Y. Jen, Brian D. Flinn
Photochemical changes in absorption and fluorescence of DDM-containing epoxides
Polymer, 142, 11-22 (2018)
DOI: 10.1016/j.polymer.2018.03.015

Thomas H. Edwards, Stefan Stoll
Optimal Tikhonov Regularization for DEER Spectroscopy
J. Magn. Reson., 288, 58-68 (2018)
DOI: 10.1016/j.jmr.2018.01.021

2017

John R. Bankston, Hannah A. DeBerg, Stefan Stoll, William N. Zagotta
Mechanism for the inhibition of the cAMP dependence of HCN ion channels by the auxiliary subunit TRIP8b
J. Biol. Chem. 292, 17794-17803 (2017)
DOI: 10.1074/jbc.M117.800722
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Alberto Collauto, Hannah A. DeBerg, Royi Kaufmann, William N. Zagotta, Stefan Stoll, Daniella Goldfarb
Rates and equilibrium constants of the ligand-induced conformational transition of an HCN ion channel protein domain determined by DEER spectroscopy
Phys. Chem. Chem. Phys. 19, 15324-15334 (2017)
DOI: 10.1039/C7CP01925D
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Claudia E. Tait, Stefan Stoll
ENDOR with band-selective shaped inversion pulses
J. Magn. Reson. 277, 36-44 (2017)
DOI: 10.1016/j.jmr.2017.02.007     PMID: 28222392
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2016

Ellen C. Hayes, Yajun Jian, Lei Li, Stefan Stoll
EPR Study of UV-Irradiated Thymidine Microcrystals Supports Radical Intermediates in Spore Photoproduct Formation
J. Phys. Chem. B 120, 10923–10931 (2016)
DOI: 10.1021/acs.jpcb.6b06587     PMID: 27648491     
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Thomas H. Edwards, Stefan Stoll
A Bayesian approach to quantifying uncertainty from experimental noise in DEER
J. Magn. Reson. 270, 87-97 (2016)
DOI: 10.1016/j.jmr.2016.06.021     PMID: 27414762
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Claudia E. Tait, Stefan Stoll
Coherent pump pulses in Double Electron Electron Resonance Spectroscopy
Phys. Chem. Chem. Phys. 18, 18470-18485 (2016)
DOI: 10.1039/C6CP03555H     PMID: 27339858
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Ellen C. Hayes, Thomas R. Porter, Charles J. Barrows, Werner Kaminsky, James M. Mayer, Stefan Stoll
Electronic Structure of a Cu(II)-Alkoxide Complex Modeling Intermediates in Copper-Catalyzed Alcohol Oxidations
J. Am. Chem. Soc. 138, 4132-4145 (2016)
DOI: 10.1021/jacs.5b13088     PMID: 26907976
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Hannah A. DeBerg, Peter S. Brzovic, Galen E. Flynn, William N. Zagotta, Stefan Stoll
Structure and Energetics of Allosteric Regulation of HCN2 Ion Channels by Cyclic Nucleotides
J. Biol. Chem. 291, 371-381 (2016)
DOI: 10.1074/jbc.M115.696450     PMID: 26559974     PMCID: PMC4697172
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2015

Evan A. Welker, Brittney L. Tiley, Crina M. Sasaran, Matthew A. Zuchero, Wing-Sze Tong, Melissa J. Vettelson, Robert A. Richards, Jonathan G. Geruntho, Stefan Stoll, Jeffrey P. Wolbach, Ian J. Rhile
A Conformational Change with Steric Interactions Affects the Inner Sphere Component of Concerted Proton-Electron Transfer in a Pyridyl-Appended Radical Cation System
J. Org. Chem. 80(17), 8705-8712 (2015)
DOI: 10.1021/acs.joc.5b01427     PMID: 26270193     
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Joscha Nehrkorn, Joshua Telser, Karsten Holldack, Stefan Stoll, Alexander Schnegg
Simulating Frequency-Domain Electron Paramagnetic Resonance: Bridging the Gap between Experiment and Magnetic Parameters for High-Spin Transition Metal Ion Complexes
J. Phys. Chem. B 119(43), 13816-13824 (2015)
DOI: 10.1021/acs.jpcb.5b04156     PMID: 26154490     
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Hannah A. DeBerg, John R. Bankston, Joel C. Rosenbaum, Peter S. Brzovic, William N. Zagotta, Stefan Stoll
Structural mechanism for the regulation of HCN ion channels by the accessory protein TRIP8b
Structure 23, 734-744 (2015)
DOI: 10.1016/j.str.2015.02.007     PMID: 25800552     PMCID: PMC4394039
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Joscha Nehrkorn, Alexander Schnegg, Karsten Holldack, Stefan Stoll
General Magnetic Transition Dipole Moments for Electron Paramagnetic Resonance
Phys. Rev. Lett. 114, 010801 (2015)
DOI: 10.1103/PhysRevLett.114.010801     PMID: 25615456
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2014

Michael C. Puljung, Hannah A. DeBerg, William N. Zagotta, Stefan Stoll
Double electron-electron resonance reveals cAMP-induced conformational change in HCN channels
Proc. Natl. Acad. Sci. USA, 111, 9816-9821 (2014)
DOI: 10.1073/pnas.1405371111     PMID: 24958877     PCMID: PMC4103371
Full Text  -  SI

Margaret L. Scheuermann, David W. Boyce, Kyle A. Grice, Werner Kaminsky, Stefan Stoll, William B. Tolman, Ole Swang, Karen I. Goldberg
Oxygen-Promoted C-H Bond Activation at Palladium
Angew. Chem. Intl. Ed. 53(25), 6492-6495 (2014)
DOI: 10.1002/anie.201402484     PMID: 24817523
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Stefan Stoll
Computational Modeling and Least-Squares Fitting of EPR Spectra
in: Sushil K. Misra (ed.), Multifrequency Electron Paramagnetic Resonance, Wiley-VCH, Weinheim, 2014, ch. 3, pp. 69-138
ISBN 978-3-527-63353-1
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2013

Joscha Nehrkorn, Berta M. Martins, Karsten Holldack, Stefan Stoll, Holger Dobbek, Robert Bittl, Alexander Schnegg
Zero-field Splittings in metHb and metMb with aquo and fluoro ligands: a FD-FT THz-EPR Study
Mol. Phys. 111(18-19), 2696-2707 (2013)
DOI: 10.1080/00268976.2013.809806
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Supattra Khabuanchalad, Jatuporn Wittayakun, Rodrigo J. Lobo-Lapidus, Stefan Stoll, R. David Britt, Bruce C. Gates
Formation of MgO-Supported Manganese Carbonyl Complexes by Chemisorption of Mn(CO)5CH3
Langmuir 29(21), 6279-6286 (2013)
DOI: 10.1021/la303269h     PMID: 23679854
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Linlin Yang, Renae S. Nelson, Alhosna Benjdia, Gengjie Lin, Joshua Telser, Stefan Stoll, Ilme Schliching, Lei Li
A Radical Transfer Pathway in Spore Photoproduct Lyase
Biochemistry 52(18), 3041-3050 (2013)
DOI: 10.1021/bi3016247     PMID: 23607538     PMCID: PMC3666868
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Stefan Stoll
Simulation of Spin-Label EPR Spectra
in: Gordon Roberts (ed), Encyclopedia of Biophysics, Springer 2013, pp. 2316-2319
DOI: 10.1007/978-3-642-16712-6_649
Simulation of Transition-Metal EPR Spectra
in: Gordon Roberts (ed), Encyclopedia of Biophysics, Springer 2013, pp. 2319-2323
DOI: 10.1007/978-3-642-16712-6_650

Michal Zalibera, Almaz Jalilov, Stefan Stoll, Ilia Guzei, Georg Gescheidt, Stephen Nelsen
Mono-Trimethylene-Bridged bis-pphenylenediamine Radical Cations and Dications: Spin States, Conformations, and Dynamics
J. Phys. Chem. A 117(7), 1439-1448 (2013)
DOI: 10.1021/jp3104358     PMID: 23339358
Full Text  -  SI

2012

Stefan Stoll, Young-Tae Lee, Mo Zhang, Richard F. Wilson, R. David Britt, David B. Goodin
Double electron-electron resonance shows cytochrome P450cam undergoes a conformational change in solution upon binding substrate
Proc. Natl. Acad. Sci. USA 109, 12888-12893 (2012)
DOI: 10.1073/pnas.1207123109     PMID: 22826259     PMCID: PMC3420169
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2011

Stefan Stoll, Hannah S. Shafaat, Jurek Krzystek, Andrew Ozarowski, Michael J. Tauber, Judy E. Kim, R. David Britt
Hydrogen bonding of tryptophan radicals revealed by EPR at 700 GHz
J. Am. Chem. Soc. 133, 18098-18101 (2011)
DOI: 10.1021/ja208462t     PMID: 22007694     PMCID: PMC3251908
Full Text  -  SI

Andrew M. Taylor, Stefan Stoll, R. David Britt, Joseph T. Jarrett
Reduction of the [2Fe-2S] Cluster Accompanies Formation of the Intermediate 9-Mercaptodethiobiotin in Escherichia coli Biotin Synthase
Biochemistry 50, 7953-7963 (2011)
DOI: 10.1021/bi201042r     PMID: 21859080     PMCID: PMC3418055
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Thomas W. Myers, Nasrin Kazem, Stefan Stoll, R. David Britt, Maheswaran Shanmugam, Louise A. Berben
A Redox Series of Aluminum Complexes: Characterization of Four Oxidation States Including a Ligand Biradical State Stabilized via Exchange Coupling
J. Am. Chem. Soc. 133, 8662-8672 (2011)
DOI: 10.1021/ja2015718     PMID: 21568319
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Stefan Stoll
High-field EPR of bioorganic radicals
Electron Paramagnetic Resonance 22, 107-154 (2011)
(Royal Society of Chemistry, Specialist Periodical Report)
DOI: 10.1039/9781849730877-00107
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2010

Supattra Khabuanchalad, Jatuporn Wittayakun, Rodrigo J. Lobo-Lapidus, Stefan Stoll, R. David Britt, Bruce C. Gates
Formation of a Manganese Tricarbonyl on the MgO Surface from Mn2(CO)10: Characterization by Infrared, Electron Paramagnetic Resonance, and X-ray Absorption Spectroscopies
J. Phys. Chem. C 114, 17212-17221 (2010)
DOI: 10.1021/jp104205q
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Stefan Stoll, Andrew Ozarowski, R. David Britt, Alexander Angerhofer
Atomic Hydrogen as High-Precision Field Standard for High-Field EPR
J. Magn. Reson. 207, 158-163 (2010)
DOI: 10.1016/j.jmr.2010.08.006     PMID: 20813570     PMCID: PMC2956851
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Stephen R. Wecksler, Stefan Stoll, Anthony T. Iavarone, Erin M. Imsand, Ha Tran, R. David Britt, Judith P. Klinman
Interaction of PqqE and PqqD in the Pyrroloquinoline Quinone (PQQ) Biosynthetic Pathway links PqqD to the Radical SAM SuperFamily
Chem. Comm. 46, 7031-7033 (2010)
DOI: 10.1039/C0CC00968G     PMID: 20737074
Full Text  -  SI

Stefan Stoll, Yaser NejatyJahromy, Joshua J. Woodward, Andrew Ozarowski, Micheal A. Marletta, R. David Britt
Nitric Oxide Synthase Stabilizes the Tetrahydrobiopterin Cofactor Radical by Controlling its Protonation State
J. Am. Chem. Soc. 132, 11812-11823 (2010)
DOI: 10.1021/ja105372s     PMID: 20669954
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Amanda C. Kohler, David D. Gae, Michael A. Richley, Stefan Stoll, Alexander Gunn, Sunghyuk Lim, Shelley S. Martin, Tzanko I. Doukov, R. David Britt, James B. Ames, J. Clark Lagarias, Andrew J. Fisher
Structural Basis for Hydration Dynamics in Radical Stabilization of Bilin Reductase Mutants
Biochemistry 49, 6206-6218 (2010)
DOI: 10.1021/bi100728q     PMID: 20557110     PMCID: PMC2914091
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Michelle M. Dicus, Andrea Conlan, Rachel Nechushtai, Patricia A. Jennings, Mark L. Paddock, R. David Britt, Stefan Stoll
The Binding of Histidine in the (Cys)3(His)1-coordinated [2Fe-2S] Cluster in Human mitoNEET
J. Am. Chem. Soc. 132, 2037-2049 (2010)
DOI: 10.1021/ja909359g     PMID: 20099820     PMCID: PMC2820139
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2009

Stephen R. Wecksler, Stefan Stoll, Ha Tran, Olafur T. Magnusson, Shu-pao Wu, David King, R. David Britt, Judith P. Klinman
Pyrroloquinoline Quinone Biogenesis: Demonstration That PqqE from Klebsiella pneumoniae Is a Radical S-Adenosyl-L-methionine Enzyme
Biochemistry 48, 10151-10161 (2009)
DOI: 10.1021/bi900918b     PMID: 19746930     PMCID: PMC2814799
Full Text  -  SI

Theodor Agapie, Sandy Suseno, Joshua J. Woodward, Stefan Stoll, R. David Britt, Michael A. Marletta
NO formation by a catalytically self-sufficient bacterial nitric oxide synthase from Sorangium cellulosum
Proc. Natl. Acad. Sci. USA 106, 16221-16226 (2009)
DOI: 10.1073/pnas.0908443106     PMID: 19805284     PMCID: PMC2752531
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Stefan Stoll, R. David Britt
General and efficient simulation of pulse EPR spectra
Phys. Chem. Chem. Phys. 11, 6614-6625 (2009)
DOI: 10.1039/b907277b     PMID: 19639136
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Stefan Stoll, Alexander Gunn, Marcin Brynda, Wesley Sughrue, Amanda Kohler, Andrew Ozarowski, Andrew J. Fisher, J. Clark Lagarias, R. David Britt
Structure of the biliverdin radical intermediate in phycocyanobilin:ferredoxin oxidoreductase identified by high-field EPR and DFT
J. Am. Chem. Soc. 131, 1986-1995 (2009)
DOI: 10.1021/ja808573f     PMID: 19159240     PMCID: PMC2753389
Full Text  -  SI

2008

Stefan Stoll, Besnik Kasumaj
Phase cycling in ESEEM
Appl. Magn. Reson. 35, 15-32 (2008)
DOI: 10.1007/s00723-008-0140-6
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John J.L. Morton, N.S. Lees, Brian M. Hoffman, Stefan Stoll
Nuclear relaxation effects in Davies ENDOR variants
J. Magn. Reson. 191, 315-321 (2008)
DOI: 10.1016/j.jmr.2008.01.006     PMID: 18258463
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Besnik Kasumaj, Stefan Stoll
5- and 6-pulse electron spin echo envelope modulation (ESEEM) of multi-nuclear spin systems
J. Magn. Reson. 190, 233-247 (2008)
DOI: 10.1016/j.jmr.2007.11.001     PMID: 18035567
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2007

Stefan Stoll. Boris Epel, Shimon Vega, Daniella Goldfarb
Ligand protons in a frozen solution of copper histidine relax via a T1e-driven three-spin mechanism
J. Chem. Phys. 127, 164511 (2007)
DOI: 10.1063/1.2794329     PMID: 17979364
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Stefan Stoll
Isotopomers and Isotopologues: The History behind the Confusion
Chem. Educator 12 (2007) 4, 240-242
DOI: 10.1333/s00897072045a
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Stefan Stoll, Arthur Schweiger
EasySpin: Simulating cw ESR Spectra.
in: Marcus A. Hemminga, Larry Berliner,
Biol. Magn. Reson. 27 (2007) 299-321
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Alain Jungen, Valentin N. Popov, Christoph Stampfer, Lukas Durrer, Stefan Stoll, Christofer Hierold
Raman intensity mapping of single-walled carbon nanotubes
Phys. Rev. B 75, 041405(R) (2007)
DOI: 10.1103/PhysRevB.75.041405
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2006

Gunnar Jeschke, Stefan Stoll
Obituary: Arthur Schweiger (1946-2006)
Angew. Chemie Int. Ed. 45 (2006) 10, 1500-1500
DOI: 10.1002/anie.200600428
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Carlos Calle, Anandaram Sreekanth, Matvey V. Fedin, Jörg Forrer, Inés Garcia-Rubio, Igor A. Gromov, Dariush Hinderberger, Besnik Kasumaj, Patrick Léger, Bruno Mancosu, George Mitrikas, Maria Grazia Santangelo, Stefan Stoll, Arthur Schweiger, René Tschaggelar, Jeffrey Harmer
Pulse EPR Methods for Studying Chemical and Biological Samples Containing Transition Metals
Helvetica Chimica Acta 89(10), 2495-2521 (2006)
DOI: 10.1002/hlca.200690229
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Cinzia Finazzo, Carlos Calle, Stefan Stoll, Sabine Van Doorslaer, Arthur Schweiger
Matrix effects on copper(II)phthalocyanine complexes. A combined continuous wave and pulse EPR and DFT study
Phys. Chem. Chem. Phys. 8, 1942-1953 (2006)
DOI: 10.1039/b516184c     PMID: 16633682
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Stefan Stoll, Arthur Schweiger
EasySpin, a comprehensive software package for spectral simulation and analysis in EPR
J. Magn. Reson. 178(1), 42-55 (2006)
DOI: 10.1016/j.jmr.2005.08.013     PMID: 16188474
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2005

Stefan Stoll, Carlos Calle, George Mitrikas, Arthur Schweiger
Peak suppression in ESEEM spectra of multinuclear spin systems
J. Magn. Reson. 177(1), 95-103 (2005)
DOI: 10.1016/j.jmr.2005.07.012     PMID: 16112885
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Boris Epel, Igor Gromov, Stefan Stoll, Arthur Schweiger, Daniella Goldfarb
Spectrometer Manager: A Versatile Control Software for Pulse EPR Spectrometers
Concepts Magn. Reson. 26B(1) 36-45 (2005)
DOI: 10.1002/cmr.b.20037
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2003

Stefan Stoll
EasySpin: a software package for the computation of EPR and ENDOR spectra
EPR Newsletter 13(1-2), 24-26 (2003)
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Stefan Stoll, Arthur Schweiger
An adaptive method for computing resonance fields for continuous-wave EPR spectra
Chem. Phys. Lett. 380(3-4) 464-470 (2003)
DOI: 10.1016/j.cplett.2003.09.043
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Corrigenda: An adaptive method for computing resonance fields for continuous-wave EPR spectra (vol 380, pg 464, 2003)
Chem. Phys. Lett. 382(1-2) 216-216 (2003)
DOI: 10.1016/j.cplett.2003.10.086
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Stefan Stoll, Arthur Schweiger
Rapid construction of solid-state magnetic resonance powder spectra from frequencies and amplitudes as applied to ESEEM
J. Magn. Reson. 163(2) 248-256 (2003)
DOI: 10.1016/S1090-7807(03)00120-4     PMID: 12914840
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2001

C. Calle, R.-A. Eichel, C. Finazzo, J. Forrer, J. Granwehr, I. Gromov, W. Groth, J. Harmer, M. Kälin, W. Lämmler, L. Liesum, Z. Mádi, S. Stoll, S. Van Doorslaer, and A. Schweiger
Electron Paramagnetic Resonance Spectroscopy
Chimia 55(10) 763-766 (2001)
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Sabine Van Doorslaer, J. J. Shane, S. Stoll, A. Schweiger, M. Kranenburg, R. J. Meier,
Continuous wave and pulse EPR as a tool for the characterization of monocyclopentadienyl Ti(III) catalysts
J. Organometal. Chem. 634(2) 185-192 (2001)
DOI: 10.1016/S0022-328X(01)01160-3
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1998

Stefan Stoll, Gunnar Jeschke, Michael Willer, Arthur Schweiger
Nutation-frequency correlated EPR spectroscopy: The PEANUT experiment
J. Magn. Reson. 130(1) 86-96 (1998)
DOI: 10.1006/jmre.1997.1285     PMID: 9469902
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