Software
4Peaks - Visualize and edit DNA sequence traces
Arlequin - Population genetic analyses of genotypic data
Consed - Assemble reads into contigs and edit
Clustal - Automated sequence alignment
HYPHY - Phylogenetic analyses of selection and hypothesis testing using maximum likelihood
PolyPhred - Automated SNP identification using Consed
PAML - Phylogenetic analyses of selection using maximum likelihood
MacPymol - 3D structure visualization
MEGA - Phylogenies, alignments and molecular evolution statistics using sequence data
