> πc jbjbSS %\11]::::: F: v x x x x x x ,!# E fv xv v v :L襥::v <a name="top">Marine Bioremediation Program Publications</a>
Marine Bioremediation Program
Publications
Key to publications on this page

[2] Publications
[2] Manuscripts Submitted or Under Internal Review
[2] Abstracts and Presentations
[2] Masters and Doctoral Dissertations

UW MBP Publications
  1. Argyle, J. L., D. L. Tumbula, and J. A. Leigh. 1996. Neomycin resistance as a selectable marker in Methanococcus maripaludis. Appl. Environ. Microbiol. 62:4233-4237.

    2.  
  2. Deming, J. W. 1998. Marine bioremediation. In Proceedings, US:EU Workshop on Marine Microorganisms - Research Issues for Biotechnology, European Commission on Marine Science and Technology, Brussels, Belgium, Oct. 1996 (in press).

    3.  
  3. Deming, J. W. 1998. Deep ocean enironmental biotechnology. Current Opinion in Biotechnology (in press).

    4.  
  4. Deming, J. W., and J. A. Baross. 1998. Survival, dormancy and non-culturable cells in extreme deep-sea environments. In Non-Culturable Microorganisms in the Environment, R. R. Colwell and D. J. Grimes, eds., Chapman and Hall, New York (in press).

    5.  
  5. Dyksterhouse, S. E., J. P. Gray, R. P. Herwig, J. C. Lara, and J. T. Staley. 1995. Cycloclasticus pugetii, gen. et sp. nov., an aromatic hydrocarbon degrading bacterium from marine sediments. System. Appl. Microbiol. 45:116-123.

    6.  
  6. Furlong, C. E., R. G. Woodbury, J. Clendenning, G. Mahairas, S. S. Yee, R. Carr, J. L. Elkind, K. A. Kukanskis, D. Bartholomew, and J. L. Melendez. 1996. A fundamental approach for biosensor characterization. Proceedings, Sensors, Expo, Philadelphia, PA, 22-24 Oct. 1996, Helmers Publishing Co., Peterborough, HN and Exponcon Management Associates, Inc., Fairfield, CT, pp. 353-356.

    7.  
  7. Furlong, C. E., R. Humbert, A. P. Withington, R. J. Richter, M. S. Chadsey, N. McEwen, J. Gray, J. C. Lara, J. T. Staley, W-F. Li, L.G. Costa, M. J. Harrington, L. T. Thomas, R. T. Herrington, G. D. Sayles, and J. Haines. 1998. Specific approaches to bioremediation. In Volume II: Biodegradation Technology Developments (S. Sikdar and R. Irwin, eds.). Technomic Pub. Co., Lancaster, PA.

    8.  
  8. Furlong, C. E, R. G. Woodbury, S. S. Yee, T. Chinowski, R. Carr, J. L. Elkind, K. A. Kukanskis, D. Bartholomew, and J. L. Melendez. 1996. Fundamental system for biosensor characterization: application to surface plasmon resonance (SPR). Proceedings, SPIE-The International Society for Optical Engineering, Chemical, Biochemical, and Environmental Fiber Sensors VIII 2836:208-214.

    9.  
  9. Geiselbrecht, A. D., R. P. Herwig, J. W. Deming, and J. T. Staley. 1996. Enumeration and phylogenetic analysis of polycyclic aromatic hydrocarbon-degrading marine bacteria from Puget Sound sediments. Appl. Environ. Microbiol. 62:3344-3349.

    10.  
  10. Geiselbrecht, A. D., B. P. Hedlund, M. A. Tichi, and J. T. Staley. 1998. Isolation of marine polycyclic aromatic hydrocarbon (PAH)-degrading Cycloclasticus strains from the Gulf of Mexico and comparison of their PAH degradation ability with that of Puget Sound Cycloclasticus strains. Appl. Environ. Microbiol. 64:4703-4710.

    11.  
  11. Gray, J. P., and R. P. Herwig. 1996. Phylogenetic analysis of the bacterial communities in marine sediments. Appl. Environ. Microbiol. 62:4049-4059.

    12.  
  12. Herrington, R. T., G. D. Sayles, C. E. Furlong, R. J. Richter, and A. D. Venosa. 1993. Evaluation of liposome encapsulated casein as a nutrient source for oil spill bioremediation. Proceedings of The Second International Symposium: In Situ and On-Site Bioreclamation, 5-8 April 1993, San Diego, CA, pp. 303-310.

    13.  
  13. Humbert, R., A. P. Withington, R. J. Richter, M. S. Chadsey, N. McEwen, J. Grap, J. C. Lara, J. T. Staley, M. J. Harrington, L. C. Thomas, W.-F. Li, L. G. Costa, R. T. Herrington, G. D. Sayles, J. R. Haines, and C. E. Furlong. 1997. Specific approaches to bioremediation. In Advances in Hazardous Waste Management Technologies, R. Irwin and S. Sikdar, eds., Technomic Publishing Co., Lancaster, PA, pp. 521-547.

    14.  
  14. Krieger-Brockett, B. B., R. P. Herwig, and J. W. Deming. 1997. An assessment of organic contaminant biodegradation rates in marine environments. International In Situ and On-Site Bioremediation 4(4):427-432.

    15.  
  15. Mannisto, M. K., E. S. Melin, J. A. Puhakka, and J. F. Ferguson. 1996. Biodegradation of PAH mixtures by a marine sediment enrichment. Polycyclic Aromatic Compounds 11:27-34.

    16.  
  16. Mannisto, M. K., J. A. Puhakka, and J. F. Ferguson. 1997. Degradation of Aroclor 1221, 1242 and anaerobically transformed Aroclor 1254 by aerobic marine sediment microorganisms. Proceedings of The Fourth International Symposium: In Situ and On-Site Bioremediation Vol. 4(2):421-426 .

    17.  
  17. Melendez, J. L., D. Bartholomew, J. Elkind, K. Kukanskis, C. Castro, R. Carr, R. Woodbury, and C. E. Furlong. 1996. Biological sensor system. Proceedings, Sensors, Expo, Philadelphia, P. A., 22-24 Oct. 1996, Helmers Publishing Co., Peterborough, HN and Exponcon Management Associates, Inc., Fairfield, CT, pp. 349-352.

    18.  
  18. Melendez, J. L., R. Carr, D. Bartholomew, K. Kukanskis, J. Elkind, S. Yee, C. Furlong, and R. Woodbury. 1996. A commercial solution for surface plasmon sensing. Sensors and Actuators B 35:212-216.

    19.  
  19. Melendez, J. L., R. Carr, D. Bartholomew, H. Taneja, S. Yee, C. Jung, and C. E. Furlong. 1997. Development of a surface plasmon resonance sensor for commercial applications. Sensors and Actuators B 39:375-379.

    20.  
  20. Melin, E. S., J. A. Puhakka, M. Mannisto, and J. F. Ferguson. 1995. Degradation of polycyclic aromatic hydrocarbons by a marine fluidized-bed enrichment. Proceedings, The Third International Symposium: In Situ and On-Site Bioreclamation, R. E. Hinchee, R. S. Skeen, and G. D. Sayles, eds., Vol. 9, Batelle Press, Columbus, OH, pp. 325-330.

    21.  
  21. Melin, E. S., J. A. Puhakka, S. E. Strand, K. J. Rockne, and J. F. Ferguson. 1996. Fluidized-bed enrichment of marine ammonia-to-nitrate oxidizers and their ability to degrade chloroaliphatics. International Biodeterioration and Biodegradation 38(1):9-18.

    22.  
  22. Ofjord, F. D., J. Lee, J. A. Puhakka, R. P. Herwig, and J. F. Ferguson. 1993. Dechlorination of pentachlorophenol and polychlorinated biphenyls by marine sediment enrichments. Proceedings, First International Conference on Contaminated Aquatic Sediments: Historical Records, Environmental Impact and Remediation, Milwaukee, WI, 14-16 June 1993.

    23.  
  23. Ofjord, F. D., J. A. Puhakka, and J. F. Ferguson. 1994. Reductive dechlorination of Aroclor 1254 by marine sediment cultures. Environ. Sci. Technol. 28:2286-2294.

    24.  
  24. Poeton, T., H. D. Stensel, and S. E. Strand. 1998. Biodegradation of polyaromatic hydrocarbons by marine bacteria: Effect of solid phase on kinetics. Water Research 33(3):868.

    25.  
  25. Rockne, K. J., H. D. Stensel, and S. E. Strand. 1997. Transformations of polyaromatic hydrocarbons in sulfate- and nitrate-reducing enrichments. International In Situ and On-Site Bioremediation Vol. 4(4):377-382.

    26.  
  26. Rockne, K. J., H. D. Stensel, R. P. Herwig, and S. E. Strand. 1998. PAH degradation and bioaugmentation by a marine methanotrophic enrichments. Bioremediation J. 1(3):209-222.

    27.  
  27. Schmidt, J. L., J. W. Deming, P. A. Jumars, and R. G. Keil. 1998. Constancy of bacterial abundance in marine sediments. Limnol. Oceanogr. (in press).

    28.  
  28. Tittle, P. C., Y. T. Liu, S. E. Strand, and H. D. Stensel. 1995. Use of alternate growth substrates to enhance PAH degradation. Proceedings, The Third International Symposium: In Situ and On-Site Bioreclamation, R. E. Hinchee, R. S. Skeen, and G. D. Sayles, eds., Vol. 9, Batelle Press, Columbus, OH, pp. 325-330.

    29.  
  29. Vetter, Y.-A. and J. W. Deming. 1994. Extracellular enzyme activity in the Arctic Northeast Water Polynya. Mar. Ecol. Progr. Ser. 114:23-34.

    30.  
  30. Vetter, Y.-A., J. W. Deming, P. A. Jumars, and B. B. Krieger-Brockett. 1998. Microbial foraging by means of freely-released extracellular enzymes: Consequences of diffusive solute transport. Microb. Ecol. (in press).

    31.  
Manuscripts Submitted or Under Internal Review
Abstracts and Presentations (since 1994)
UW MBP Masters and Doctoral Dissertations
  1. Anders, Krista M. 1994. Anaerobic biodegradation of chlorinated phenolic compounds by freshwater and marine enrichments. Masters Thesis, Civil Engineering (with J. F. Ferguson).

    2.  
  2. Anders, Krista M. Anticipated 1998. Transformations of chlorophenolics in the marine environment: Fate modeling and the characterization of methanogenic and sulfidogenic chitin-degrading enrichments. PhD Thesis, Civil Engineering (with J. F. Ferguson).

    3.  
  3. Bieniek, Michelle. 1995. Isolation of PAH-tolerant protists and their effects on PAH degradation by Cycloclasticus sp. Masters Thesis, Oceanography (with J. W. Deming and E. J. Lessard).

    4.  
  4. Fox, David. 1995. Model effects of tidal and groundwater seepage on contaminant transport from a capped PAH-contaminated marine sediment in Eagle Harbor, Puget Sound. Masters Thesis, Civil Engineering (with J. Massman [and J. F. Ferguson]).

    5.  
  5. Geiselbrecht, Allison D. Anticipated 1998. The distribution and degradative potential of aerobic polycyclic aromatic hydrocarbon-degrading bacteria in marine sediments. PhD Thesis, Microbiology (with J. T. Staley).

    6.  
  6. Hedlund, Brian. Anticipated 1999. Polycyclic aromatic hydrocarbon catabolic diversity in marine sediments. PhD Thesis, Microbiology (with J. T. Staley).

    7.  
  7. Lee, Jean H. 1993. Anaerobic biotransformations of chlorophenolic compounds by marine sediment enrichments. Masters Thesis, Civil Engineering (with J. F. Ferguson).

    8.  
  8. Lee, Seunbong. Anticipated 1998. Masters Thesis, Civil Engineering (with H. D. Stensel).

    9.  
  9. Liu, Yu-Ting. 1994. Enhancement of polyaromatic hydrocarbon degradation in the marine environment. Masters Thesis, Civil Engineering (with H. D. Stensel).

    10.  
  10. Mannisto, Minna. 1995. Biodegradation of polychlorinated biphenyls and polycyclic aromatic hydrocarbons by marine sediment microorganisms. Masters Thesis, Helsinki University of Technology (with J. F. Ferguson).

    11.  
  11. Ofjord, Gro D. 1993. Reductive dehalogenation of polychlorinated biphenyls and chlorobenzene by marine microorganisms. Masters Thesis, Civil Engineering (with J. F. Ferguson).

    12.  
  12. Poeton, Tom. 1997. Biodegradation of polyaromatic hydrocarbons by marine bacteria: Effect of solid phase on kinetics. Masters Thesis, Civil Engineering (with H. D. Stensel).

    13.  
  13. Rockne, Karl J. 1997. Biodegradation of multi-ring homocyclic and heterocyclic aromatic compounds under anaerobic conditions in marine environments. PhD Thesis, Civil Engineering (with S. E. Strand and H. D. Stensel).

    14.  
  14. Schmidt, Jill L. 1996. Porosity and benthic bacterial abundance. Masters Thesis, Oceanography (with J. W. Deming).

    15.  
  15. Tofting, Randi. 1995. Polycyclic aromatic hydrocarbons in the marine sediment. Diploma thesis for Technical Studies, National Technical University of Norway (with B. B. Krieger-Brockett).

    16.  
  16. Vetter, Yves-Alain. Anticipated 1998. Bacterial foraging in marine aggregates and sediments by means of freely released extracellular enzymes. PhD Thesis, Oceanography (with J. W. Deming).

    17.  
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