sections: Journals | Biochemistry | NMR | Modeling | Software

University of Washington

• UW Healthlinks

• UW Library

Journals

• Biochemistry

• Cell

• Current Opinions in Biotechnology

• Current Opinions in Chemical Biology

• Current Opinions in Structural Biology

• EMBO

• Genes & Development

• Journal of the American Chemical Society

• Journal of Biological Chemistry

• Journal of Biomolecular NMR

• Journal of Magnetic Resonance

• Journal of Molecular Biology

• Molecular and Cell Biology

• Molecular Cell

• Nature

• Nature Biotechnology

• Nature Structural & Molecular Biology

• Nucleic Acids Research

• Proceedings of the National Academy of Sciences (USA)

• Protein Science

• RNA

• Science

• Structure

Useful Biochemistry Links

• PDB Ligand Expo

• EMBL-EBI Clustal W Multiple Sequence Alignment Submission Form

• Restriction Mapper: Online Restriction Mapping

• REBASE: Database of Restriction Enzymes

• General PCR Notes

• Amino Acid Single Letter Codes and Structures

• Amino Acid Codon Table

• UW HealthLinks BioResearcher Tookit

• CODEHOP--Codon Usage Tables for many different organisms

NMR Tools

• CCPN

• sparky

• nmrPipe

• xplorNIH

• cns

• modelfree

• unio

• NMRSERVER

• extend-NMR

• we-NMR

• CARA

Online Calculators and Conversions

• Weight to Mole Converter. Many useful tools here!!

• Calculating Amounts of Nucleic Acids

• Oligonucleotide Molecular Weight Calculator

• Oligonucleotide Properties Calculator

• Convert your DNA or AA sequences into many different formats

• Rotor Calculations and Conversions

• Unit Conversions and Conversion Factors for Molecular Biology

Modeling and Structure Prediction Tools

• ESyPred3D Web Server

• Jpred: Protein Secondary Structure Prediction

• Modeller: Comparative Protein Structure Modeling

• The PredictProtein Server: Sequence Analysis and Structure Prediction

• CPHmodels 2.0 Server: Homology Modeling Server

• Protein BioInformatics

• MFOLD: Prediction of RNA Secondary Structure

• ProDom: A Comprehensive Set of Protein Domain Families

Other Important Websites

• BLAST

• Expasy

• The Protein Databank

• Biochemistry Stores

• Bioanalytical Pharmacy Core Facilities

• Health Sciences Academic Services and Facilities

• Biochemistry DNA Sequencing Facility

• Tips on Designing Primers for Automated Sequencing

• UW EH&S Laboratory Safety Manual

• ISI Web of Science

Useful Software

• firefox

• zotero -- Firefox plugin providing excellent bibliography management.

• Free PDF Viewers

• more by OS: [LinuxLinux] [MacMac] [WinWin]