Stock solutions for the shelves

Solution

 

1 M Tris

 

 

 

 

Desired pH:

    pH 7.4

    pH 7.6

    pH 8.0

 

Method of Preparation

 

Dissolve 121.1 g tris base in 800 ml of H2O. Adjust the pHt to the desire value by adding concentrated HCl.

 

Approximate amount of concentrated HCl:

   70 ml

   60 ml

   42 ml

 

Allow the solution to cool to room temperature before making final adjustments to the pH. Make up the volume of the solution to 1 liter. Dispense into aliquots and sterilize by autoclaving.

 

 

If the 1 M solution has a yellow color, discard it and obtain a better quality Tris.

 

Although many types of electrodes do not accurately measure the pH of Tris solutions, suitable electrodes and be obtained from most manufacturers.

 

 

 

50% glucose

Slowly add 500g of glucose (dextrose) to ~500 ml dH2O.  Microwave 5 minutes.  Bring level up to 1000 ml with dH2O.  Aliquot 100 ml per bottle.  Autoclave.

 

0.5 M EDTA

(pH 8.0)

Add 186.1 g of disodium ethylene tetraacetateá2H2O to 800 ml of H2O. Stir vigorously on a magnetic stirrer. Adjust pH to 8.0 with NaOH (~20 g of NaOH pellets). Dispense into aliquots and sterilize by autoclaving.

The disodium salt of EDTA will not go into solution until the pH of the solution is adjusted to ~8.0 by the addition of NaOH.

5 M NaCl

Dissolve 292.2 g of NaCl in 800 ml of H2O. Adjust volume to 1 liter. Dispense into aliquots and sterilize by autoclaving.

 

1 M MgCl2

Dissolve 203.3 g of MgCl2á6H2O in 800 ml of H2O. Adjust volume to 1 liter. Dispense into aliquots and sterilize by autoclaving.

MgCl2 is extremely hygroscopic. Buy in small bottles (e.g. 100 g) and do not store opened bottles for long periods of time.

3 M Sodium acetate (pH 5.2)

Dissolve 408.1 g sodium acetateá3H2O in 800 ml of H2O. Adjust pH to 5.2 with glacial acetic acid. Adjust volume to 1 liter. Dispense into aliquots and sterilize by autoclaving.

 

 

1 M Dithiothreitol (DTT)

Dissolve 3.09 g of DTT in 20 ml of 0.01 M sodium acetate (pH 5.2). Filter sterilize. Dispense into 1 ml aliquots and store at -20¡C.

Do not autoclave DTT or solutions containing DTT.

B-Mercaptoethanol (BME)

 

Usually obtained as a 14.4 M solution. Store in a dark bottle at 4¡C.

Do not autoclave BME or solutions containing BME.

 

10% Sodium dodecyl sulfate (SDS) [aka sodium lauryl sulfate]

Dissolve 100 g of electrophoresis-grade SDS in 900 ml of H2O. Heat to 68¡C to assist dissolution. Adjust pH to 7.2 by adding a few drops of conc. HCl. Adjust volume to 1 liter. Dispense into aliquots.

Wear a mask when weighing SDS. There is no need to sterilize 10% SDS

1 M Magnesium acetate

Dissolve 214.46 g of magnesium acetateá

4H2O in 800 ml of H2O. Adjust volume to 1 liter. Filter sterilize.

 

5 M Ammonium acetate

Dissolve 385 g of ammonium acetate in 800 ml of H2O. Adjust volume to 1 liter. Filter sterilize.

 

5 M Potassium Acetate (3 M KOAc)

 

To 60 ml of 5 M potassium acetate add 11.5 ml of glacial acetic acid and 28.5 ml of H2O. The resulting solution is 3 M with respect to potassium and 5 M with respect to acetate

 

20x SSX

Dissolve 175.3 g of NaCl and 88.2 g of sodium citrateá2H2O in 800 ml of H2O. Adjust pH to 7.0 with a few drops of a 10 N solution of NaOH. Adjust volume to 1 liter. Dispense into aliquots and filter sterilize.

 

 

20x SSPE

Dissolve 174 g of NaCl, 27.6 g of NaH2PO4áH2O and 7.4 g of EDTA in 800 ml of H2O. Adjust pH to 7.4 with NaOH (~6.5 ml of a 10 N solution). Adjust the volume to 1 liter. Dispense into aliquots. Filter sterilize.

 

 

Ethidium bromide, 10 mg/ml

 

Add 1 g of ethidium bromide to 100 ml of H2O. Stir on a magnetic stirrer for several hours to ensure that the dye has dissolve. Wrap the container in foil or transfer to a dark bottle and store at 4¡C.

Ethidium bromide is a powerful mutagen. Wear gloves, a lab coat and a mask when weighing it out.

 

Trichloracetic acid (TCA), 100% solution

To a bottle containing 500 g of TCA, add 227 ml of H2O. The resulting solution will contain 100% (w/v) TCA.

Handle carefully.  Wear gloves and a lab coat.  Work with TCA in the hood.

NaD aliquots

Prepare a 25 nM solution to place in 6 ml sterile tubes in 1 ml, 2 ml and 3 ml quantities.  MW NaD = 663.5  To make 200 ml of solution:

 

[663.5 g/L] * [0.2 L] = 132 g * 0.025 = 3.3 g

 

Place 3.3 g NaD in 200 ml sterile dH2O and distribute it after it dissolves.  Freeze and place in marked boxes in the freezer. 

 

0.825 g/ 50 mls