{"id":2526,"date":"2022-12-29T14:03:22","date_gmt":"2022-12-29T22:03:22","guid":{"rendered":"http:\/\/depts.washington.edu\/cdbrm\/wordpress\/?page_id=2526"},"modified":"2022-12-29T14:03:24","modified_gmt":"2022-12-29T22:03:24","slug":"publications","status":"publish","type":"page","link":"https:\/\/depts.washington.edu\/cdbrm\/wordpress\/research-labs-center-for-developmental-biology-and-regenerative-medicine\/mccarthy-lab\/publications\/","title":{"rendered":"Publications"},"content":{"rendered":"\n<p>Frederick, M.A., Williamson, K., Garcia, M.F., Ferretti, M.B., <strong>McCarthy, R.L.<\/strong>, Donahue, G., Montero, E.L., Takenaka, N., Reynaga, J., Kadoch, C., Zaret, K.S. (2022) Pioneer factor locally opens compacted chromatin to enable targeted ATP-dependent nucleosome remodeling. <em>Nature Struc. Mol. Biol.<\/em> (In Press)<\/p>\n\n\n\n<p><strong>McCarthy, R.L., <\/strong>Kaeding, K.E., Keller, S.H., Zhong, Y., Xu, L., Hsieh, A., Hou, Y., Donahue, G., Becker, J.S., Alberto, O., Lim, B., Zaret, K.S. (2021) Diverse heterochromatin-associated proteins repress distinct classes of genes and repetitive elements. <em>Nature Cell Biol.<\/em> 23, 905-914, doi: 10.1038\/s41556-021-00725-7<\/p>\n\n\n\n<p>Lerner, J., Gomez-Garcia, P.A., <strong>McCarthy, R.L.,<\/strong> Liu, Z., Lakadamyali, M., Zaret, K.S. (2020) Two-parameter mobility assessments discriminate diverse regulatory factor behaviors in chromatin. <em>Mol. Cell.<\/em> 79(4), 677-688, doi: 10.1016\/j.molcel.2020.05.036<\/p>\n\n\n\n<p>Becker, J.S., <strong>McCarthy, R.L.,<\/strong> Sidoli, S., Donahue, G., Kaeding, K.E., He, Z., Lin, S., Garcia, B.A., Zaret, K.S. (2017) Genomic and proteomic resolution of heterochromatin and its restriction of alternate fate genes. <em>Mol. Cell<\/em>. 68, 1023-1037, doi: 10.1016\/j.molcel.2017.11.030<\/p>\n\n\n\n<p><strong>McCarthy, R.L., <\/strong>Mak, D.H., Burks, J.K., Barton, M.C. (2017) Rapid monoisotopic cisplatin based barcoding for multiplexed mass cytometry. <em>Sci. Rep<\/em>. 7(1), 3779, doi: 10.1038\/s41598-017-03610-2<\/p>\n\n\n\n<p><strong>McCarthy, R.L., <\/strong>Duncan, A.D., Barton, M.C. (2017) Sample preparation for mass cytometry analysis. <em>J. Vis. Exp<\/em>. (122), e54394, doi: 10.3791\/54394<\/p>\n\n\n\n<p>Tovy, A., Spiro, Z., <strong>McCarthy, R.L.,<\/strong> Shipony, Z., Aylon, Y., Alton, K., Ainbinder, E., Furth, N., Tanay, A., Barton, M.C., Oren, M. (2017) p53 is essential for DNA methylation homeostasis in na\u00efve embryonic stem cells, and its loss promotes clonal heterogeneity. <em>Genes &amp; Dev<\/em>. 31, 959-972, doi: 10.1101\/gad.299198.117<\/p>\n\n\n\n<p>Wang, L., Koutelou, E., Hirsch, C., <strong>McCarthy, R.L.,<\/strong> Schibler, A., Lin, K., Lu, Y., Jeter, C., Shen, J., Barton, M.C., Dent, S.Y.R. (2017) GCN5 regulates FGF signaling and activates selective MYC target genes during early embryoid body differentiation. <em>Stem Cell Reports<\/em>. 10(1), 287-299, doi: 10.1016\/j.stemcr.2017.11.009<\/p>\n\n\n\n<p>Jain, A.K., Xi, Y., <strong>McCarthy, R.L.,<\/strong> Allton, K., Akdemir, K.C., Patel, L.R., Aronow, B., Lin, C., Li, W., Yang, L., Barton, M.C. (2016) LncPRESS1 is a p53-regulated lncRNA that safeguards pluripotency by disrupting SIRT6-mediated de-acetylation of histone H3K56. <em>Mol. Cell<\/em>. 64(5), 967-981, doi: 10.1016\/j.molcel.2016.10.039<\/p>\n\n\n\n<p>Jung, K.-H., <strong>McCarthy, R.L.,<\/strong> Zhou, C., Cermelli, S., Uptrety, N., Barton, M.C., Beretta, L. (2016) MicroRNA-194 regulates hepatocytic differentiation of progenitor cells by targeting YAP1. <em>Stem Cells<\/em>. 34, 1284-1296, doi:&nbsp;10.1002\/stem.2283<\/p>\n\n\n\n<p><strong><u>Complete List of Published Work in MyBibiography:<\/u><\/strong><\/p>\n\n\n\n<p><strong>&nbsp;<\/strong><a href=\"http:\/\/www.ncbi.nlm.nih.gov\/sites\/myncbi\/1BwlVGErQ54QD\/bibliography\/47965734\/public\/?sort=date&amp;direction=ascending\"><strong>http:\/\/www.ncbi.nlm.nih.gov\/sites\/myncbi\/1BwlVGErQ54QD\/bibliography\/47965734\/public\/?sort=date&amp;direction=ascending<\/strong><\/a><strong><\/strong><\/p>\n","protected":false},"excerpt":{"rendered":"<p>Frederick, M.A., Williamson, K., Garcia, M.F., Ferretti, M.B., McCarthy, R.L., Donahue, G., Montero, E.L., Takenaka, N., Reynaga, J., Kadoch, C., Zaret, K.S. (2022) Pioneer factor locally opens compacted chromatin to enable targeted ATP-dependent nucleosome remodeling. Nature Struc. Mol. Biol. (In Press) McCarthy, R.L., Kaeding, K.E., Keller, S.H., Zhong, Y., Xu, L., Hsieh, A., Hou, Y., &#8230; <\/p>\n<p class=\"read-more-container\"><a title=\"Publications\" class=\"read-more button\" href=\"https:\/\/depts.washington.edu\/cdbrm\/wordpress\/research-labs-center-for-developmental-biology-and-regenerative-medicine\/mccarthy-lab\/publications\/#more-2526\" aria-label=\"More on Publications\">Read more<\/a><\/p>\n","protected":false},"author":1,"featured_media":0,"parent":2517,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"_monsterinsights_skip_tracking":false,"_monsterinsights_sitenote_active":false,"_monsterinsights_sitenote_note":"","_monsterinsights_sitenote_category":0,"footnotes":""},"class_list":{"0":"post-2526","1":"page","2":"type-page","3":"status-publish","5":"no-featured-image-padding"},"yoast_head":"<!-- This site is optimized with the Yoast SEO plugin v18.3 - https:\/\/yoast.com\/wordpress\/plugins\/seo\/ -->\n<title>Publications - 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