{"id":1436,"date":"2017-12-09T02:44:05","date_gmt":"2017-12-09T02:44:05","guid":{"rendered":"http:\/\/depts.washington.edu\/cfrtc\/?p=1436"},"modified":"2017-12-14T23:11:13","modified_gmt":"2017-12-14T23:11:13","slug":"past-fellow-thomason","status":"publish","type":"post","link":"https:\/\/depts.washington.edu\/cfrtc\/past-fellow-thomason\/","title":{"rendered":"Past Fellow &#8211; Thomason"},"content":{"rendered":"<p>[et_pb_section fullwidth=&#8221;on&#8221; specialty=&#8221;off&#8221;][et_pb_fullwidth_slider admin_label=&#8221;Fullwidth Slider&#8221; show_arrows=&#8221;on&#8221; show_pagination=&#8221;on&#8221; auto=&#8221;off&#8221; parallax=&#8221;off&#8221; parallax_method=&#8221;off&#8221; module_id=&#8221;interior&#8221;][et_pb_slide background_image=&#8221;https:\/\/depts.washington.edu\/cfrtc\/wp-content\/uploads\/2014\/12\/microscope.jpg&#8221; background_color=&#8221;#ffffff&#8221; alignment=&#8221;center&#8221; background_layout=&#8221;dark&#8221; \/][\/et_pb_fullwidth_slider][\/et_pb_section][et_pb_section][et_pb_row][et_pb_column type=&#8221;1_4&#8243;][et_pb_sidebar admin_label=&#8221;Fellowships Sidebar&#8221; orientation=&#8221;left&#8221; area=&#8221;et_pb_widget_area_11&#8243; background_layout=&#8221;light&#8221; \/][\/et_pb_column][et_pb_column type=&#8221;3_4&#8243;][et_pb_text admin_label=&#8221;Past Fellow Thomason text&#8221; background_layout=&#8221;light&#8221; text_orientation=&#8221;left&#8221;]<\/p>\n<h1 style=\"text-align: center;\">Characterization of quorum sensing regulated small RNAs in <em>Pseudomonas aeruginosa<\/em><\/h1>\n<p>&nbsp;<\/p>\n<p>Fellow: <a href=\"https:\/\/microbiology.washington.edu\/users\/maureen-thomason\">Maureen Thomason, PhD<br \/>\n<\/a>Microbiology<\/p>\n<p>Mentor: \u00a0<a href=\"https:\/\/microbiology.washington.edu\/users\/e-peter-greenberg\">Pete Greenberg, PhD<br \/>\n<\/a>Professor,\u00a0Microbiology<\/p>\n<p>&nbsp;<\/p>\n<p>In the last decade, it has become apparent that small regulatory RNAs (sRNAs) facilitate the adaptation of bacteria to a variety of environmental niches through post-transcriptional regulation of target mRNAs. Environmental signals such as nutrient and oxygen deprivation, membrane stress and quorum sensing signaling molecules can induce sRNA mediated gene regulation leading to dramatic alterations in the transcriptional profile of a bacterium. Acute infections of the cystic fibrosis (CF) lung by <em>Pseudomonas aeruginosa<\/em> are associated with secretion of virulence factors, many of which are regulated by quorum sensing control pathways that enable establishment of an infection. As chronic infections persist, the secretion of virulence factors is reduced and the ability of <em>P. aeruginosa<\/em> to form biofilms increases, a process controlled by sRNAs in other bacteria. Therefore, it is likely there are sRNAs under quorum control, which may be involved in mediating and altering the transcriptional profile of <em>P. aeruginosa<\/em> facilitating its ability to colonize and adapt to the CF lung. The work described here will elucidate the function of the quorum sensing regulated sRNAs, Lsr1 and Lsr2, and identify additional sRNAs under quorum control. This work will generate a fundamental base of knowledge for quorum sensing regulated sRNAs, which can then be studied and examined further in CF lung infection models. Understanding these regulons and the roles they play in the ability of <em>P. aeruginosa<\/em> to infect and colonize the lungs of CF patients may lead to the identification of new targets and therapeutic treatments for CF.<\/p>\n<p>[\/et_pb_text][\/et_pb_column][\/et_pb_row][\/et_pb_section]<\/p>\n","protected":false},"excerpt":{"rendered":"<p>Fellow: Maureen Thomason, PhD<br \/>\nMicrobiology<\/p>\n<p>Mentor: \u00a0Pete Greenberg, PhD<br \/>\nProfessor<br \/>\nMicrobiology<\/p>\n","protected":false},"author":1,"featured_media":0,"comment_status":"closed","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"_et_pb_use_builder":"on","_et_pb_old_content":"<p>P.I.: <a href=\"http:\/\/depts.washington.edu\/nephron\/directory\/bios\/deboer.html\" target=\"_blank\">Ian de boer, MD<\/a><br \/> Associate Professor of Medicine<br \/> Nephrology<\/p><p><a href=\"http:\/\/depts.washington.edu\/nephron\/directory\/bios\/kestenbaum.html\" target=\"_blank\">Bryan Kestenbaum, MD<\/a><br \/> Associate Professor of Medicine<br \/> Nephrology<\/p><p>Vitamin D deficiency is one of the most common nutritional deficits in cystic fibrosis (CF) patients, is resistant to treatment, and may contribute to bone disease and infections. Possible reasons for vitamin D deficiency in CF include intestinal malabsorption, altered liver metabolism, and loss of vital carrier proteins in the urine; however, empiric evidence to support these mechanisms is lacking.<\/p><p>In this application we propose a series of experiments designed to comprehensively define the vitamin D metabolic axis in CF. First, we will characterize the circulating profile of vitamin D metabolites, vitamin D carrier proteins, and downstream hormonal responses in 100 adult CF patients and 50 control subjects. Next we will conduct formal pharmacokinetic studies of radiolabeled tracer to probe the fate of substrate vitamin D in CF patients. We will then measure transcription of key vitamin D metabolism genes in circulating monocytes. Identifying the underlying causes of vitamin D deficiency in CF patients could suggest novel treatments that target vitamin D deficiency as a means to improve clinical outcomes in this disorder.<\/p>","_et_gb_content_width":"","_monsterinsights_skip_tracking":false,"_monsterinsights_sitenote_active":false,"_monsterinsights_sitenote_note":"","_monsterinsights_sitenote_category":0,"footnotes":"","_links_to":"","_links_to_target":""},"categories":[18],"tags":[],"_links":{"self":[{"href":"https:\/\/depts.washington.edu\/cfrtc\/wp-json\/wp\/v2\/posts\/1436"}],"collection":[{"href":"https:\/\/depts.washington.edu\/cfrtc\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/depts.washington.edu\/cfrtc\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/depts.washington.edu\/cfrtc\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/depts.washington.edu\/cfrtc\/wp-json\/wp\/v2\/comments?post=1436"}],"version-history":[{"count":2,"href":"https:\/\/depts.washington.edu\/cfrtc\/wp-json\/wp\/v2\/posts\/1436\/revisions"}],"predecessor-version":[{"id":1466,"href":"https:\/\/depts.washington.edu\/cfrtc\/wp-json\/wp\/v2\/posts\/1436\/revisions\/1466"}],"wp:attachment":[{"href":"https:\/\/depts.washington.edu\/cfrtc\/wp-json\/wp\/v2\/media?parent=1436"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/depts.washington.edu\/cfrtc\/wp-json\/wp\/v2\/categories?post=1436"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/depts.washington.edu\/cfrtc\/wp-json\/wp\/v2\/tags?post=1436"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}