{"id":552,"date":"2015-05-21T17:55:03","date_gmt":"2015-05-21T17:55:03","guid":{"rendered":"http:\/\/depts.washington.edu\/cfrtc\/?p=552"},"modified":"2017-06-01T17:37:03","modified_gmt":"2017-06-01T17:37:03","slug":"pilot-7-hoffman","status":"publish","type":"post","link":"https:\/\/depts.washington.edu\/cfrtc\/pilot-7-hoffman\/","title":{"rendered":"Pilot 7 &#8211; Hoffman"},"content":{"rendered":"<p>[et_pb_section fullwidth=&#8221;on&#8221; specialty=&#8221;off&#8221;][et_pb_fullwidth_slider admin_label=&#8221;Fullwidth Slider&#8221; show_arrows=&#8221;on&#8221; show_pagination=&#8221;on&#8221; auto=&#8221;off&#8221; parallax=&#8221;off&#8221; parallax_method=&#8221;off&#8221; module_id=&#8221;interior&#8221;][et_pb_slide background_image=&#8221;https:\/\/depts.washington.edu\/cfrtc\/wp-content\/uploads\/2014\/12\/microscope.jpg&#8221; background_color=&#8221;#ffffff&#8221; alignment=&#8221;center&#8221; background_layout=&#8221;dark&#8221; \/][\/et_pb_fullwidth_slider][\/et_pb_section][et_pb_section fullwidth=&#8221;off&#8221; specialty=&#8221;off&#8221;][et_pb_row][et_pb_column type=&#8221;1_4&#8243;][et_pb_sidebar admin_label=&#8221;Pilots Sidebar&#8221; orientation=&#8221;left&#8221; area=&#8221;et_pb_widget_area_7&#8243; background_layout=&#8221;light&#8221; \/][\/et_pb_column][et_pb_column type=&#8221;3_4&#8243;][et_pb_text admin_label=&#8221;Text&#8221; background_layout=&#8221;light&#8221; text_orientation=&#8221;left&#8221;]<\/p>\n<h1 style=\"text-align: center;\">Pilot 7: Acute Effects of Kalydeco in People with CF and the G551D Mutation<\/h1>\n<p>P.I.: <strong><a href=\"http:\/\/depts.washington.edu\/hofflab\/\" target=\"_blank\">Lucas Hoffman, MD, PhD<\/a><\/strong><br \/>\nAssociate Professor<br \/>\nDepartment of Pediatrics<br \/>\nAdjunct Associate Professor,<br \/>\nDepartment of Microbiology<\/p>\n<p>In this study, we propose to test the hypothesis that the microbiota in respiratory samples from people with CF ill change within 1 week with Kalydeco treatment, a period during which sweat chloride values decreased by more than 50% on average (P. Singh, pers. comm.).<\/p>\n<p><b>Aim: Define the CF sputum microbiome before and after beginning Kalydeco. <\/b><br \/>\nWe will extract DNA from the sputum samples taken before and at days 2 and 7 after beginning treatment with Kalydeco from all 12 study subjects (36 total samples). A portion of each sample will be treated with a reagent that will exclude DNA from dead cells (propidium monoazide11), limiting the proposed analysis to only live cells (as time and funds allow, sample aliquots that were not PMA treated will also be sequenced and the results compared). These treated samples will then be studied using an existing analytical pipeline (Illumina HiSeq shotgun sequencing followed by phylogenetic analysis using the MetaPhlAn computational approach12), developed through an existing collaboration between the Hoffman and Miller laboratories, to define the identities and relative abundances of bacteria, and computational metagenomic analysis to define the content of specific gene families, such as adhesins or metabolic pathways that may be selected within the CF airway. Total and individual viable bacterial loads will be determined using quantitative PCR.<\/p>\n<p>[\/et_pb_text][\/et_pb_column][\/et_pb_row][\/et_pb_section]<\/p>\n","protected":false},"excerpt":{"rendered":"<p>P.I.: Ian Sweet, PhD<br \/>\nResearch Associate Professor<br \/>\nMetabolism, Endocrinology and Nutrition<br \/>\nDirector, Islet Core, UW DERC<br \/>\nAffiliate Investigator, Benaroya Research Institute<\/p>\n","protected":false},"author":1,"featured_media":0,"comment_status":"closed","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"_et_pb_use_builder":"on","_et_pb_old_content":"<p class=\"p6\"><span class=\"s2\"><b>P.I.: <\/b><a href=\"http:\/\/depts.washington.edu\/doce\/our-research\/facultyresearch-laboratories\/ian-sweet-phd\/\"><span class=\"s3\"><b>Ian Sweet, PhD<br \/> <\/b><\/span><\/a><\/span>Research Associate Professor<br \/> Metabolism, Endocrinology and Nutrition<br \/> Director, Islet Core, UW DERC<br \/> Affiliate Investigator, Benaroya Research Institute<\/p><p class=\"p6\">Cystic fibrosis (CF) is a congenital disease arising from mutations in the cystic fibrosis transmembrane conductance regulator (CFTR) and affects about 30,000 people nationwide. Mutations of the CFTR gene affect functioning of the chloride ion channels in epithelial cell membranes, leading to the many symptoms of CF. As CF patients age, there is an increased incidence of diabetes mellitus, occurring in almost half the patients with the disease. This form of diabetes has features of both type 1 and type 2 diabetes and is called Cystic Fibrosis Related Diabetes (CFRD). The most conceptually attractive factor responsible for the increased incidence of diabetes is diminished insulin secretion due to impaired beta cell function. We have obtained preliminary data showing that insulin secretion is significantly decreased in islets from CFTR knockout mice. Based on these data, we hypothesize that the loss of CFTR function is related to a loss in cAMP-stimulated insulin secretion. The PI of this application has been Director of the Islet Cell Functional Analysis Core, part of an NIDDK-funded Diabetes Research Center, for the last 10 years, and has established and validated a wide array of assays specifically to characterize biochemical mechanisms regulating islet secretory function involving metabolic, electrogenic and signaling factors. We propose to use these assays, as well as assays available through the Inflammation Core of the CF Research and Translation Center, to characterize and study the properties of islets from mouse models of CF that indicate the role of CFTR mutations in CFRD. To accomplish this, we will carry out 2 specific aims, one that will focus on in vitro experiments designed to determine the intracellular mechanisms mediating the impaired secretory function due to the CFTR mutation. The second aim will focus on in vivo conditions where it will be determined whether conditions resulting from the development of CF (as simulated by infecting mice with Pseudomonas aeruginosa) further decrease secretory function. The results of these studies will provide data that has both fundamental and clinical implications and will support a future R01 application to be submitted by the PI.<\/p>","_et_gb_content_width":"","_monsterinsights_skip_tracking":false,"_monsterinsights_sitenote_active":false,"_monsterinsights_sitenote_note":"","_monsterinsights_sitenote_category":0,"footnotes":"","_links_to":"","_links_to_target":""},"categories":[12],"tags":[],"_links":{"self":[{"href":"https:\/\/depts.washington.edu\/cfrtc\/wp-json\/wp\/v2\/posts\/552"}],"collection":[{"href":"https:\/\/depts.washington.edu\/cfrtc\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/depts.washington.edu\/cfrtc\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/depts.washington.edu\/cfrtc\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/depts.washington.edu\/cfrtc\/wp-json\/wp\/v2\/comments?post=552"}],"version-history":[{"count":5,"href":"https:\/\/depts.washington.edu\/cfrtc\/wp-json\/wp\/v2\/posts\/552\/revisions"}],"predecessor-version":[{"id":1176,"href":"https:\/\/depts.washington.edu\/cfrtc\/wp-json\/wp\/v2\/posts\/552\/revisions\/1176"}],"wp:attachment":[{"href":"https:\/\/depts.washington.edu\/cfrtc\/wp-json\/wp\/v2\/media?parent=552"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/depts.washington.edu\/cfrtc\/wp-json\/wp\/v2\/categories?post=552"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/depts.washington.edu\/cfrtc\/wp-json\/wp\/v2\/tags?post=552"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}