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<big>'''CHARGE Consortium Wiki''' ('''C'''ohorts for '''H'''eart and '''A'''ging '''R'''esearch in '''G'''enomic '''E'''pidemiology)</big> | <big>'''CHARGE Consortium Wiki''' ('''C'''ohorts for '''H'''eart and '''A'''ging '''R'''esearch in '''G'''enomic '''E'''pidemiology)</big> | ||
== Getting started == | == Getting started == | ||
Unlike the [http://www.chargeconsortium.com CHARGE Consortium Public Website], this wiki requires a username and password to view most pages. To gain access, please fill-out the [[Special:RequestAccount|Request Account]] form; new user requests are reviewed by the [[RSC|Research Steering Committee]] approximately twice per month. | Unlike the [http://www.chargeconsortium.com CHARGE Consortium Public Website], this wiki requires a username and password to view most pages. To gain access, please fill-out the [[Special:RequestAccount|Request Account]] form; new user requests are reviewed by the [[RSC|Research Steering Committee]] approximately twice per month. | ||
Once logged in, you can edit existing pages or [[New Page|Create a new page]]. Wikipedia has a nice [http://en.wikipedia.org/wiki/Wikipedia:Tutorial tutorial] on how to edit pages. | Once logged in, you can edit existing pages or [[New Page|Create a new page]]. Wikipedia has a nice [http://en.wikipedia.org/wiki/Wikipedia:Tutorial tutorial] on how to edit pages. | ||
== Consortium Documents (public, no login required) == | == Consortium Documents (public, no login required) == | ||
*[[ChargePrinciples|CHARGE Principles]] ([http://depts.washington.edu/chargeco/docs/CHARGE_Consortium-02-01-2008.pdf pdf]) : Principles for collaboration in the consortium, approved Jan 2008 by founding cohorts. | *[[ChargePrinciples|CHARGE Principles]] ([http://depts.washington.edu/chargeco/docs/CHARGE_Consortium-02-01-2008.pdf pdf]) : Principles for collaboration in the consortium, approved Jan 2008 by founding cohorts. | ||
*[[ChargeWorkingGroupPrinciples|CHARGE Working Group Principles]] ([http://depts.washington.edu/chargeco/docs/CHARGE_WGConsortium-02-01-2008.pdf pdf]) : Principles for collaboration in CHARGE working groups, new participants in working groups or CHARGE projects are asked to review and agree to these principles before joining. | *[[ChargeWorkingGroupPrinciples|CHARGE Working Group Principles]] ([http://depts.washington.edu/chargeco/docs/CHARGE_WGConsortium-02-01-2008.pdf pdf]) : Principles for collaboration in CHARGE working groups, new participants in working groups or CHARGE projects are asked to review and agree to these principles before joining. | ||
*[[DataSharingPrinciples|Aggregate Results-Sharing Principles]] : Guidelines for sharing results of GWAS, for participation in working groups and collaborative meta-analyses. | *[[DataSharingPrinciples|Aggregate Results-Sharing Principles]] : Guidelines for sharing results of GWAS, for participation in working groups and collaborative meta-analyses. | ||
*[[ResultsSharingFormat|Results Sharing Format]] : file format guidelines for sharing of aggregate results for meta-analysis. | *[[ResultsSharingFormat|Results Sharing Format]] : file format guidelines for sharing of aggregate results for meta-analysis. | ||
== Committees & Working Groups == | == Committees & Working Groups == | ||
*[[RSC|Research Steering Committee]]: Membership and minutes | *[[RSC|Research Steering Committee]]: Membership and minutes | ||
*[[Analysis subcomittee|Analysis Subcommittee]]: Resources and references for doing analyses, and minutes of analysis calls | *[[Analysis subcomittee|Analysis Subcommittee]]: Resources and references for doing analyses, and minutes of analysis calls | ||
*[http://depts.washington.edu/chargeco/wiki/CHARGE-S CHARGE-S PAGE] : The CHARGE Sequencing GWAS follow-up project | *[http://depts.washington.edu/chargeco/wiki/CHARGE-S CHARGE-S PAGE] : The CHARGE Sequencing GWAS follow-up project | ||
*[[WorkingGroups|Working Groups]]: Directory of phenotype working groups | *[[WorkingGroups|Working Groups]]: Directory of phenotype working groups | ||
*[[ResultsSharing|Results Sharing]]: Listing of file-sharing sites for each Working Group and contributing study, and details about CHARGE results sharing protocols | *[[ResultsSharing|Results Sharing]]: Listing of file-sharing sites for each Working Group and contributing study, and details about CHARGE results sharing protocols | ||
[[Media:Example.ogg]] | [[Media:Example.ogg]] | ||
== Consortium Information == | == Consortium Information == | ||
*[http://www.chargeconsortium.com/ CHARGE Consortium] : Public consortium website | *[http://www.chargeconsortium.com/ CHARGE Consortium] : Public consortium website | ||
*[[Logos]] : versions of the CHARGE Tiger, with some explanations of its origins. | *[[Logos]] : versions of the CHARGE Tiger, with some explanations of its origins. | ||
*[[ConsortiumOverview|Consortium Overview]]: Overview for each cohort's genotyping, imputation, and funding acknowledgements. | *[[ConsortiumOverview|Consortium Overview]]: Overview for each cohort's genotyping, imputation, and funding acknowledgements. | ||
*[[Serve E-mail Charge Newsletters|CHARGE Newsletters]]: Archive of the newsletters sent to everyone with a wiki account | *[[Serve E-mail Charge Newsletters|CHARGE Newsletters]]: Archive of the newsletters sent to everyone with a wiki account | ||
*[[Grant Information and Updates|Grant information]]: Updates on CHARGE grant submissions | *[[Grant Information and Updates|Grant information]]: Updates on CHARGE grant submissions | ||
*'''CHARGE Publications:''' [[http://depts.washington.edu/chargeco/wiki/cgi_img_auth.php/a/a3/CHARGE_Bibliography_%28Chronological%2C_n%3D146%29_5.4.12.pdf CHARGE Bibliography (as of May 4, 2012)]] (PDF) | *'''CHARGE Publications:''' [[http://depts.washington.edu/chargeco/wiki/cgi_img_auth.php/a/a3/CHARGE_Bibliography_%28Chronological%2C_n%3D146%29_5.4.12.pdf CHARGE Bibliography (as of May 4, 2012)]] (PDF) | ||
'''Methods paper:''' Psaty BM, O'Donnell CJ, Gudnason V, Lunetta KL, Folsom AR, Rotter J.L., Uitterlinden AG, Harris TB, Witteman JCM, Boerwinkle E, on behalf of the CHARGE Consortium. Cohorts for Heart and Aging Research in Genomic Epidemiology (CHARGE) Consortium: Design of prospective meta-analyses of genome-wide association studies from five cohorts. Circ Cardiovasc Genet. 2009;2:73-80. | |||
'''Methods paper:''' Psaty BM, O'Donnell CJ, Gudnason V, Lunetta KL, Folsom AR, Rotter J.L., Uitterlinden AG, Harris TB, Witteman JCM, Boerwinkle E, on behalf of the CHARGE Consortium. Cohorts for Heart and Aging Research in Genomic Epidemiology (CHARGE) Consortium: Design of prospective meta-analyses of genome-wide association studies from five cohorts. Circ Cardiovasc Genet. 2009;2:73-80. | |||
== Investigator Meetings == | == Investigator Meetings == | ||
=== Upcoming meetings === | === Upcoming meetings === | ||
*[[Iceland Meeting 2012|Iceland Meeting]] : May 16-18 2012 | *[[Iceland Meeting 2012|Iceland Meeting]] : May 16-18 2012 | ||
| Line 44: | Line 45: | ||
=== Past meetings (includes links to agendas and slides) === | === Past meetings (includes links to agendas and slides) === | ||
*Iceland Meeting : May 16-18 2012 <br> | |||
*[[LosAngeles Meeting 2011|Los Angeles Meeting]] : October 26-28, 2011. | *[[LosAngeles Meeting 2011|Los Angeles Meeting]] : October 26-28, 2011. | ||
| Line 55: | Line 57: | ||
== Founding Cohorts == | == Founding Cohorts == | ||
*Age, Gene, Environment Susceptibility ([http://www.hjarta.is/english/ages AGES]) | *Age, Gene, Environment Susceptibility ([http://www.hjarta.is/english/ages AGES]) | ||
*Atherosclerosis Risk in Communities Study ([http://www.cscc.unc.edu/aric/ ARIC]) | *Atherosclerosis Risk in Communities Study ([http://www.cscc.unc.edu/aric/ ARIC]) | ||
*Cardiovascular Health Study ([http://www.chs-nhlbi.org/default.htm CHS]) | *Cardiovascular Health Study ([http://www.chs-nhlbi.org/default.htm CHS]) | ||
*Framingham Heart Study ([http://www.framinghamheartstudy.org/ FHS]) | *Framingham Heart Study ([http://www.framinghamheartstudy.org/ FHS]) | ||
*Rotterdam Study (ERGO or [http://www.erasmus-epidemiology.nl/research/ergo.htm RS]) | *Rotterdam Study (ERGO or [http://www.erasmus-epidemiology.nl/research/ergo.htm RS]) | ||
== Other Resources == | == Other Resources == | ||
*Please try to use text or online-viewable formats such as plain text or PDF whenever feasible. Microsoft has a [http://www.microsoft.com/download/en/details.aspx?id=12298 plug-in for Word 2007/2010] that allows you to save documents directly to MediaWiki Format. Similar functionality is also available in [http://www.openoffice.org/ OpenOffice]. | |||
*[[TimeZones|Time Zones]]: Useful information for setting up conference calls | *Please try to use text or online-viewable formats such as plain text or PDF whenever feasible. Microsoft has a [http://www.microsoft.com/download/en/details.aspx?id=12298 plug-in for Word 2007/2010] that allows you to save documents directly to MediaWiki Format. Similar functionality is also available in [http://www.openoffice.org/ OpenOffice]. | ||
*[[TimeZones|Time Zones]]: Useful information for setting up conference calls | |||
*Consult the [http://meta.wikimedia.org/wiki/Help:Contents User's Guide] or [http://www.mediawiki.org/wiki/Manual:FAQ MediaWiki FAQ] for information on using the wiki software. | *Consult the [http://meta.wikimedia.org/wiki/Help:Contents User's Guide] or [http://www.mediawiki.org/wiki/Manual:FAQ MediaWiki FAQ] for information on using the wiki software. | ||
Revision as of 17:45, 13 July 2012
CHARGE Consortium Wiki (Cohorts for Heart and Aging Research in Genomic Epidemiology)
Getting started
Unlike the CHARGE Consortium Public Website, this wiki requires a username and password to view most pages. To gain access, please fill-out the Request Account form; new user requests are reviewed by the Research Steering Committee approximately twice per month.
Once logged in, you can edit existing pages or Create a new page. Wikipedia has a nice tutorial on how to edit pages.
Consortium Documents (public, no login required)
- CHARGE Principles (pdf) : Principles for collaboration in the consortium, approved Jan 2008 by founding cohorts.
- CHARGE Working Group Principles (pdf) : Principles for collaboration in CHARGE working groups, new participants in working groups or CHARGE projects are asked to review and agree to these principles before joining.
- Aggregate Results-Sharing Principles : Guidelines for sharing results of GWAS, for participation in working groups and collaborative meta-analyses.
- Results Sharing Format : file format guidelines for sharing of aggregate results for meta-analysis.
Committees & Working Groups
- Research Steering Committee: Membership and minutes
- Analysis Subcommittee: Resources and references for doing analyses, and minutes of analysis calls
- CHARGE-S PAGE : The CHARGE Sequencing GWAS follow-up project
- Working Groups: Directory of phenotype working groups
- Results Sharing: Listing of file-sharing sites for each Working Group and contributing study, and details about CHARGE results sharing protocols
Consortium Information
- CHARGE Consortium : Public consortium website
- Logos : versions of the CHARGE Tiger, with some explanations of its origins.
- Consortium Overview: Overview for each cohort's genotyping, imputation, and funding acknowledgements.
- CHARGE Newsletters: Archive of the newsletters sent to everyone with a wiki account
- Grant information: Updates on CHARGE grant submissions
- CHARGE Publications: [CHARGE Bibliography (as of May 4, 2012)] (PDF)
Methods paper: Psaty BM, O'Donnell CJ, Gudnason V, Lunetta KL, Folsom AR, Rotter J.L., Uitterlinden AG, Harris TB, Witteman JCM, Boerwinkle E, on behalf of the CHARGE Consortium. Cohorts for Heart and Aging Research in Genomic Epidemiology (CHARGE) Consortium: Design of prospective meta-analyses of genome-wide association studies from five cohorts. Circ Cardiovasc Genet. 2009;2:73-80.
Investigator Meetings
Upcoming meetings
- Iceland Meeting : May 16-18 2012
- Houston Texas Meeting: December 12-14, 2012
Past meetings (includes links to agendas and slides)
- Iceland Meeting : May 16-18 2012
- Los Angeles Meeting : October 26-28, 2011.
- Boston Meeting: February 9-11, 2011
- Houston Meeting: April 28-30, 2010
- Washington DC Meeting Oct 29-30, 2009
- Rotterdam Meeting: held 16-17 April 2009
- Seattle Meeting: held 9-11 July 2008
- Framingham Meeting: held 22-24 January 2008
Founding Cohorts
- Age, Gene, Environment Susceptibility (AGES)
- Atherosclerosis Risk in Communities Study (ARIC)
- Cardiovascular Health Study (CHS)
- Framingham Heart Study (FHS)
- Rotterdam Study (ERGO or RS)
Other Resources
- Please try to use text or online-viewable formats such as plain text or PDF whenever feasible. Microsoft has a plug-in for Word 2007/2010 that allows you to save documents directly to MediaWiki Format. Similar functionality is also available in OpenOffice.
- Time Zones: Useful information for setting up conference calls
- Consult the User's Guide or MediaWiki FAQ for information on using the wiki software.