Year |
Authors |
Title |
Reference |
Availability |
| 2019 | Aghai, M., Khan, Z., Joseph, M.R., Stoda, A.M., Sher, A.W., Ettl, G.J., and Doty, S.L. |
The effect of microbial endophyte consortia on Pseudotsuga menziesii and Thuja plicata survival, growth, and physiology across edaphic gradients | Front. Microbiol. 10:1353. doi: 10.3389/fmicb.2019.01353 | Endophyte Impact on Conifers |
| 2018 | Hyungmin Rho, Sharon L. Doty, and Soo-Hyung Kim |
Estimating microbial respiratory CO2 from endophytic bacteria in rice |
Plant Signaling & Behavior, DOI: |
Endophytic Respiration |
| 2018 | Sharon Lafferty Doty |
Symbiotic Plant-Bacterial Endospheric Interactions |
Microorganisms 2018, 6, 28 doi:10.3390/microorganisms6020028 | Editorial |
| 2018 | Pierre M. Joubert and Sharon Lafferty Doty |
Ch. 1. Endophytic Yeasts: Biology, Ecology, and Applications |
in Endophytes of Forest Trees, Ed. Pirttila & Frank, 2nd edition, Springer | Endophytic Yeasts |
| 2018 | Sharon Lafferty Doty |
Successful Field Trial of Endophyte-Assisted Poplar Tree Phytoremediation of TCE |
Poplar and Willow News. FAO of the United Nations, Feb 2018 issue, pg 3-4 |
P&W Newsletter |
| 2018 | Hyungmin Rho, Victor Van Epps, Nicholas Wegley, Sharon Lafferty Doty, Soo-Hyung Kim |
Salicaceae Endophytes Modulate Stomatal Behavior and Increase Water Use Efficiency in Rice |
Front. Plant Sci., 02 March 2018 | doi.org/10.3389/fpls.2018.00188 |
Rice WUE |
| 2017 | Levy, A., Gonzalez, I.S., Mittelviefhaus, M., Clingenpeel, S., Paredes, S.H., Miao, J., Wang, K., Devescovi, G., Stillman, K., Monteiro, F., Alvarez, B.R., Lundberg, D., Lu, T-Y., Lebeis, S., Jin, Z., McDonald, M., Klein, A.P., Feltcher, M., Rio, T.G., Grant, S.P., Doty, S.L., Ley, R.E., Zhao, B., Venturi, V., Pelletier, D.A., Vorholt, J.A., Tringe, S.G., Woyke, T., and Dangl, J.L. 2018. Genetic features of bacterial adaptation to plants. Nature Genetics 50:138-150. |
Genomic features of bacterial adaptation to plants |
Nature Genetics 50, 138–150 (2018) doi:10.1038/s41588-017-0012-9 |
Nature Genetics |
| 2017 | Kandel, S.L., Joubert, P.M., and Doty, S.L. |
Bacterial endophyte colonization and distribution within plants |
Microorganisms 2017, 5, 77; doi:10.3390/microorganisms5040077 |
Colonization Review |
| 2017 | Doty, S.L. (editor) |
Functional Importance of the Plant Microbiome: Implications for Agriculture, Forestry and Bioenergy |
Springer |
Springer |
| 2017 | Doty, S.L. |
Chapter 1: Functional Importance of the Plant Microbiome |
Springer, pgs 1-5 |
Springer book chapter 1 |
| 2017 | Doty, S.L. |
Chapter 2: Endophytic N-Fixation: Controversy and a Path Forward |
Springer, pgs 7-20 |
Springer book chapter 2 |
| 2017 | P. Okubara, N. Kumar, L. Hohenwarter, D. Graham, S. Kandel, S.L. Doty, Ute Micknass, Karl-Heinz Kogel, and Jafargholi Imani |
Inhibition of fungal and bacterial plant pathogens by VEG’LYS®, an Allium-based antimicrobial formulation. |
J Biol. & Nature 8(2)40-51 |
Veglys |
| 2017 | Rho, H., Hsieh, M., Kandel, S.L., Cantillo, J., Doty, S.L., and Kim, S_H |
Do endophytes promote growth of host plants under stress? A meta-analysis on plant stress mitigation by endophytes |
Microial Ecology (2017) doi: 10.1007/s00248-017-1054-3 |
Meta-Analysis |
| 2017 | Doty, S.L., Freeman, J. L., Cohu, C. M., Burken, J. G., Firrincieli, A., Simon, A., Khan, Z., Isebrands, J.G., Lukas, J., and Blaylock, M.J. |
Enhanced degradation of TCE on a Superfund site using endophyte-assisted poplar tree phytoremediation |
Environmental Science and Technology 51 (17): 10050–10058. DOI: 10.1021/acs.est.7b01504 |
ES&T Endophytes |
| 2017 | Legault, E.K., James, C.A., Stewart, K., Muiznieks, I., Doty, S.L., and Strand, S.E. |
A field trial of TCE phytoremediation by genetically modified poplars expressing cytochrome P450 2E1 |
Environmental Science and Technology 6;51(11):6090-6099 |
ES&T 2E1 Tgnc |
| 2017 | Kandel, S. L., Firrincieli, A., Joubert, P.M., Okubara, P.A., Leston, N., McGeorge, K., Mugnozza, G.S., Harfouche, A., Kim, S.-H., and Doty, S.L. |
An in vitro study of bio-control and plant growth promotion potential of Salicaceae endophytes |
Frontiers in Microbiology vol8, article #386 |
Biocontrol Endophytes |
| 2016 | Khan, Z., Rho, H., Firrincieli, A., Hung, S.H., Luna, V., Masciarelli , O., Kim, S.-H., and Doty, S.L. |
Growth enhancement and drought tolerance of hybrid poplar upon inoculation with endophyte consortia |
Current Plant Biology 6:38-47 |
Drought Tolerance |
| 2016 | Doty, S.L., Sher, A.W., Fleck, N.D., Khorasani, M., Bumgarner, R.B., Khan, Z., Ko, A.W.K., Kim, S.-H., and DeLuca, T.H. |
Variable N-fixation in wild Populus |
PLOS ONE 11(5):e0155979 |
Poplar N-Fixation | 2016 | Ellen Weir and Sharon L. Doty |
Social acceptability of phytoremediation: Role of risk and values |
International Journal of Phytoremediation 18(10)1029-1036 |
Weir&Doty | 2016 | Sharon L. Doty |
Editorial: Plant microbe symbiotic interactions |
Plant Molecular Biology, 90(6):1 |
Editorial | 2016 | Sharon L. Doty |
Key roles of the poplar microbiome. |
Poplar and Willow News, Issue 6 |
IPC Newsletter | 2015 | Khan, Z., Kandel, S., Ramos, D.N., Ettl, G.J., Kim, S.-H., and Doty, S.L. |
Increased biomass of nursery-grown Douglas-fir seedlings upon inoculation with diazotrophic endophytic consortia. |
Forests, Vol. 6, 3582-3593 |
Forests |
| 2015 | Firrincieli, A., Otillar, R., Salamov, A., Schmutz, J., Khan, Z., Redman, R. S., Fleck, N. D., Lindquist, E., Grigoriev, I. V., and Doty, S.L. |
Genome sequence of the plant growth promoting endophytic yeast Rhodotorula graminis WP1. |
Frontiers in Microbiology, Vol. 6, Article 978 |
WP1 |
| 2015 | Kandel, S., Herschberger, N., Kim, S.-H., and Doty, S.L. |
Diazotrophic endophytes of poplar and willow for growth promotion of rice plants in nitrogen-limited conditions. |
Crop Science 55:1765-1772 |
Rice |
| 2014 | Khan, Z, Roman, D., Kintz, T., Delas Alas, M., Yap, R., Doty, S.L. |
Degradation, Phytoprotection and Phytoremediation of Phenanthrene by Endophyte PD1 |
Environmental Science & Technology 48.20: 12221-2228 |
pdf | summary/erratum | Pubmed |
| 2014 | Nagy, L.G., Ohm, R.A., Kovacs, G.M., Floudas, D., Riley, R., Gacser, A., Sipiczki, M., Davis, J.M., Doty, S.L., de Hoog, G.S., Lang, B.F., Spatafora, J.W., Martin, F.M., Grigoriev, I.V., and Hibbett, D.S |
Latent Homology and Convergent Regulatory Evolution Underlies the Repeated Emergence of Yeasts |
Nature Communications DOI: 10.1038/ncomms5471 |
Nature |
| 2013 | Kang, J. W. and Doty, S.L. |
Co-metabolic degradation of trichloroethylene by Burkholderia cepacia G4 with poplar leaf homogenate. |
Canadian Journal of Microbiology DOI 10.1139/cjm-2014-0095 |
pdf | Pubmed |
| 2013 | Knoth, J., Kim, S.H., Ettl, G., and Doty, S. L. |
Biological nitrogen fixation and biomass accumulation within poplar clones as a result of inoculations with diazotrophic endophyte consortia |
New Phytologist doi 10.1111/nph.12536 |
|
| 2012 | Khan, Z., Guelich, G., Phan, H., Redman, R., and Doty, S. L. |
Bacterial and yeast endophytes from poplar and willow promote growth in crop plants and grasses |
ISRN Agronomy 2012: Article ID 890280; doi:10.5402/2012/890280 |
|
| 2012 | Knoth, J., Kim, S.H., Ettl, G., and Doty, S. L. |
Effects of cross host species inoculation of nitrogen-fixing endophytes on growth and leaf physiology of maize |
GCB Bioenergy 2012: doi:10.1111/gcbb.12006 |
|
| 2012 | Vajzovic, A., Bura, R., and Doty, S. L. |
Novel endophytic yeast Rhodotorula mucilaginosa strain PTD3: II. Production of xylitol and ethanol in the presence of inhibitors |
Journal of Industrial Microbiology & Biotechnology 39(10):1453-1463 |
Pubmed |
| 2012 | Bura, R., Vajzovic, A., and Doty, S. L. |
Novel endophytic yeast Rhodotorula mucilaginosa strain PTD3: I. Production of xylitol and ethanol |
Journal of Industrial Microbiol. & Biotech. 39(7):1003-1011 |
Pubmed |
| 2012 | Kang, J. W., Khan, Z., and Doty, S. L. |
Biodegradation of TCE by an endophyte of hybrid poplar. |
Applied and Environmental Microbiology 78(9):3504-3507 |
PDN3 |
| 2012 | Kang, J. W., J. Song, Doty, S. L., and Lee, D. K. |
Diversity of rhizobia associated with leguminous trees in South Korea |
Journal of Basic Microbiology 52, 1–8 |
Rhizobia |
| 2012 | Lee, K. Y., Strand, S. E., and Doty, S. L. |
Phytoremediation of chlorpyrifos by Populus and Salix. |
International Journal of Phytoremediation 14(1):48-61 |
pdf | Pubmed |
| 2011 | Miller, R. S., Khan, Z., and Doty, S. L. |
Comparison of trichloroethylene toxicity, removal, and degradation by varieties of Populus and Salix for improved phytoremediation applications |
||
| 2011 | Redman, R., Kim, Y., Woodward, C., Greer, C., Espino, L., Doty, S.
L., and Rodriguez, R |
Increased Fitness and Adaptation of Rice
Plants to Cold, Drought and Salt Stress Via Habitat Adapted Symbiosis:
A Strategy for Mitigating Impacts of Climate Change. |
PloS Biology 6(7)
e14823. |
pdf | Pubmed |
Xu, P., Bura, R. and Doty, S. L. 2011. |
Genetic analysis of D-xylose
metabolism by endophytic yeast strains of Populus. |
Genetics and
Molecular Biology 34(3):471-478. |
pdf | Pubmed | |
| 2010 | Van Aken, B., Doty, S. L |
Transgenic plants and associated
bacteria for phytoremediation of chlorinated compounds. |
Biotechnol.
Genet. Eng. Rev. 26:43-64. |
pdf | Pubmed |
| 2010 | Kang, J. W., Hui-WenWilkerson ,Federico M. Farin, Theo K.Bammler
,Richard P.Beyer, Stuart E. Strand, and Sharon L. Doty |
Mammalian
cytochrome CYP2E1 triggered differential gene regulation in response to
trichloroethylene (TCE) in a transgenic poplar. |
Functional and
Integrative Genomics 10(3):417-424. |
Pubmed |
| 2009 | Xin, G., Glawe, D., and Doty, S.L. |
Characterization of three
endophytic indole-3- acetic acid-producing yeasts occurring in Populus
trees |
Pubmed | |
| 2009 | Xin, G., Kang, J. W., Zhang, G., Staley, J. T., and Doty, S. L. |
A diazotrophic, indole- 3-acetic acid producing endophyte from
wild cottonwood. |
||
| 2009 | James, A., Xin, G., Doty, S. L., Newman, L. A., Strand, S. E. |
A mass balance study of the phytoremediation of
perchloroethylene-contaminated groundwater |
Environmental Pollution.
157(8-9):2564-2569 |
pdf | Pubmed |
| 2009 | Khan, Z. and Doty, S. L |
Characterization of bacterial
endophytes of sweet potato plants |
Plant and Soil 322:197-207 |
|
| 2009 | Doty, S. L., Oakley, B., Xin, G., Kang, J. W., Singleton, G. L.,
Khan, Z., Vajzovic, A., Staley, J. T |
Diazotrophic endophytes of
native black cottonwood and willow |
Symbiosis 47: 23-33 |
|
| 2008 | James,C.A.; Xin,G., Doty, S. L., Strand, S. E |
Degradation of low molecular weight volatile organic compounds by plants genetically modified with mammalian cytochrome P450 2E1 |
Environ. Sci Technol.
42(1): 289-293 |
pdf | Pubmed |
| 2007 | Doty,S.L.; James,C.A.; Moore,A.L.; Vajzovic,A.; Singleton,G.L.;
Ma,C.; Khan,Z.; Xin,G.; Kang,J.W.; Park,J.Y.; Meilan,R.; Strauss,S.H;
Wilkerson, J., Farin, F., and Strand,S.E |
Enhanced
phytoremediation of volatile environmental pollutants with transgenic
trees. |
Proc. Natl. Acad. Sciences 104(43):16816-16821. |
pdf | Pubmed |
| 2005 | Doty, S. L., Dosher, M. R., Singleton, G. L., Moore, A. L., Van
Aken, B., Stettler, R. F., Strand, S. E., Gordon, M. P |
Identification of an endophytic Rhizobium in stems of Populus |
Symbiosis 39:27-35 |
|
| 2004 | Van Aken, B., Peres, C. M., Doty, S. L., Yoon, J. M., and Schnoor,
J. L. |
Methylobacterium oliveri sp. nov.: A novel aerobic,
pink-pigmented, facultatively methylotrophic, methane-utilizing
bacterium isolated from poplar trees (Populus deltoides x nigra DN34) |
Int J Syst Evol Microbiol 54(4):1191-1196 |
|
| 2003 | Doty, S. L., Shang, T., Wilson, A. M., Moore, A. L., Newman, L. A.,
Strand, S. E., Gordon, M. P |
Metabolism of the soil and
groundwater pollutants, ethylene dibromide and trichloroethylene, by
the tropical leguminous tree, Leuceana leucocephala |
Water Research 37:
441-449 |
|
| 2002 | Banerjee, S., Shang, T. Q., Wilson, A. M., Moore, A. L., Strand, S.
E., Gordon, M. P., and Doty, S. L |
Expression of functional
mammalian P450 2E1 in hairy root cultures |
Biotechnology and
Bioengineering, 77(4):463-466 |
Pubmed |
| 2001 | Shang, T. Q., Doty, S. L., Wilson, A. M., Howald, W. N., and Gordon,
M. P. |
Trichloroethylene oxidative metabolism in plants: the
trichloroethanol pathway |
Phytochemistry 58:1055-1065 |
Pubmed |
| 2000 | Doty, S. L., Q. T. Shang, Wilson, A. M., Westergreen, A. D., Newman,
L. A., Strand, S. E. and Gordon, M. P. |
Enhanced metabolism of
halogenated hydrocarbons in transgenic plants containing mammalian
cytochrome P450 2E1 |
Proc. Natl. Acad. Sciences 97(12):6287- 6291 |
pdf |
| 1998 | Newman, L. A., S. L. Doty, K. L. Gery, P. E. Heilman, I. Muiznieks,
Q. T. Shang, S. T. Siemieniec, S. E. Strand, X. Wang, A. M. Wilson, and
M. P. Gordon. |
Phytoremediation of organic contaminants: A review
of phytoremediation research at the University of Washington |
Journal
of Soil Contamination 7(4):531-542 |
TandFonline |
| 1997 | Heath, J. D., M. I. Boulton, D. M. Raineri, S. L. Doty, A. R.
Mushegian, T. C. Charles, J. W. Davies, and E. W. Nester. |
Discrete regions of the sensor protein VirA determine the
strain-specific ability of Agrobacterium to agroinfect maize |
Mol.
Plant Microbe Interactions 10:221-227 |
pdf | Pubmed |
| 1994 | Charles, T., Doty, S. L., and Nester, E. W |
Strain
construction in Agrobacterium by electroporation of genomic DNA:
Utility in the analysis of chromosomal virulence mutants |
Appl.
Environ. Microbiol. 60:4192-4194 |
|
| 1993 | Doty, S. L., Chang, M., and Nester, E. W. |
The chromosomal
virulence gene, chvE, of Agrobacterium tumefaciens is regulated by a
LysR family member |
J. Bacteriol. 175(24):7880- 7886 |
Pubmed |