< Bibliography 2000-2010
Friday Harbor Laboratories

List of FHL Publications

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2009

Alberts J.B. 2009. Biophysically realistic filament bending dynamics in agent-based biological simulation. PLoS ONE 4(3):e4748.

Bentlage B, Peterson AT, P. Cartwright P (2009)  Inferring distributions of chirodropid box-       jellyfishes (Cnidaria: Cubozoa) in geographic and ecological space using ecological niche       modeling Marine Ecology Progress Series:384: 121-133.

Bertram, D.F., N. E. Phillips, and R. R. Strathmann. 2009. Evolutionary and experimental change in egg volume, heterochrony of larval body and juvenile rudiment, and evolutionary reversibility in pluteus form. Evol. Devel. 11: 728-739.

Boulding, EG, deWaard JR, K. P. Ang KP, Hebert PDN. 2009. Population genetic structure of the salmon louse, Lepeophtheirus salmonis (Krøyer) on wild and farmed salmonids around the Pacific coast of Canada. Aqua Res 40: 973-979.

Bourdeau, P. E. 2009. Prioritized phenotypic responses to combined predators in a marine snail. Ecology 90(6): 1659-1669.

Bourdeau, P. E. 2009. Cue reliability, risk sensitivity, and inducible morphological defense in a marine snail. Oecologia DOI 10.1007/s00442-009-1488-5.

Brown, F. D.*, Tiozzo, S.*, Roux, M. M.*, Ishizuka, K., Swalla, B. J., De Tomaso, A.W. (2009). Early lineage specification of long-lived germline precursors in the colonial ascidian, Botryllus schlosseri. Development. 136: 3485-3494.

Brown, F.D.*, Keeling, E.*, Le, A., Swalla, B. J. (2009). Whole-body regeneration in a colonial ascidian, Botrylloides violaceus. Journal of Experimental Zoology Part B: Molecular and Developmental Evolution. 312B: 1-16.

Cannon, J.T., Rychel, A.L., Blasczyk, H., Halanych, K.M. and Swalla, B.J. (2009) Molecular phylogeny of Hemichordata. Mol. Phylo. Evolution 52: 17–24.

Castillo AM, Nowak RB, Littlefield KP, Fowler VM, and Littlefield RS. 2009. A Nebulin Ruler Does Not Dictate Thin Filament Lengths. Biophysical Journal, 96:1856-65.

Dethier, M.N. and S.L. Williams. 2009. Seasonal stresses shift optimal intertidal algal habitats. Marine Biology 156:555-567.

Dethier, M.N., J. Ruesink, H. Berry, A. G. Sprenger, B. Reeves. 2009. Restricted ranges in physical factors may constitute subtle stressors for estuarine biota. Marine Environmental Research (in press).

Edgar B.A. and Kim K.J. (2009) Sizing up the cell. Science 235:158-159.

Hacker, S.D. and M.N. Dethier. 2009. Differing consequences of removing ecosystem-modifying invaders: significance of impact and community context to restoration potential. Invited chapter for: G. Rilov and J.A. Crooks, eds. Biological Invasions in Marine Ecosystems. Ecological Studies 204, Springer-Verlag, Berlin.

Hanson, T., A. Potter, J. Miskelly, and S. Vernon. 2009. Surveys for the island marble in San Juan County, Washington, 2008.  WA Department of Fish & Wildlife final report to U.S. Fish & Wildlife Service. 29 pp.

Heidelberg, K.B., K. L. O’Neil, J.C. Bythell and K.P. Sebens. 2009. Vertical distribution and diel patterns of zooplankton abundance and biomass at Conch Reef, Florida Keys (USA). J. Plankton Research (in press)

Holt, M.M., Noren, D., Veirs, V., Emmons, C., and Veirs, S. 2009. Speaking up: Killer whales (Orcinus orca) increase their call amplitude in response to vessel noise. Journal of the Acoustical Society of America (JASA) Express Letters. 125: EL27-EL32 (Published online 22 Dec 2008).

Horton, J.M. and A.P. Summers. 2009. Morphology and material properties of a fish with acellular bone. Journal of Experimental Biology. 212: 1413-1420.

Kim KJ (2009) Ingeneue: a software tool to simulate and explore genetic regulatory networks. in Systems Biology: Methods in Molecular Biology, I. Maly, ed. Humana Press vol. 500: 169-201.

Kim KJ, Fernandes VM (2009) Effects of Ploidy and Recombination on Evolution of Robustness in a Model of the Segment Polarity Network. PLoS Comp. Bio. 5(2): e1000296.

Kingsolver, J.G. 2009. The Well-Temperatured Biologist. The American Naturalist 174(6):

Kocot, K.M. and K.M. Halanych. (2009) Investigation of molluscan phylogeny using nuclear protein-coding genes. The Malacologist 53: 18-20.

Krahn, M.M., Hanson, M.B., Schorr, G.S., Emmons, C.K., Burrows, D.G., Bolton, J.L., Baird, R.W., Ylitalo, G.M. 2009.  Effects of age, sex and reproductive status on persistent organic pollutant concentrations in Southern Resident killer whales. Marine Pollution Bulletin. 58: 1522-1529.

Lambert, G. Adventures of a sea squirt sleuth: unraveling the identity of Didemnum vexillum,
a global ascidian invader. Aquatic Invasions (2009) Volume 4, Issue 1: 5-28.

Lee HJ, Boulding EG. 2009. Spatial and temporal population genetic structure of four northeastern Pacific littorinid gastropods: the effect of mode of larval development on variation at one mitochondrial and two nuclear DNA markers. Mol Ecol 18: 2165-2184.

Lemay MA, Boulding EG. 2009. Microsatellite pedigree analysis reveals high variance in reproductive success and reduced genetic diversity in hatchery-spawned northern abalone. Aquaculture 295: 22-29

Lewis C, Bentlage B (2009) Clarifying the identity of the Japanese Habu-kurage, Chironex      yamaguchii, sp. nov. (Cnidaria: Cubozoa: Chirodropida). Zootaxa 2030: 59-65

Maslakova, S., J. Von Dohren. 2009. Larval development with transitory epidermis in Paranemertes peregrina and other Hoplonemerteans. Biol. Bull 216: 273-292.

Mianzan, H., E.W. Dawson and C.E. Mills, 2009. Phylum Ctenophora: Comb Jellies.pp. 48-57. In The New Zealand Inventory of Biodiversity. Volume 1. Kingdom Animalia: Radiata, Lophotrochozoa, and Deuterostomia (D.P. Gordon, editor). Canterbury University Press, Christchurch. In press.

Mikhailov, K.V. et al (2009). The origin of Metazoa: a transition from temporal to spatial cell differentiation: BioEssays, 31(7):758-68.

Miskelly, J. and A. Potter.  2009. Surveys for the island marble in San Juan County, Washington, 2007. WA Department of Fish & Wildlife. 26 pp.

Moroz, L.L. (2009) On the independent origins of complex brains and neurons. Brain Behav Evol 74:177-190.

Noren, D.P., A. H. Johnson, D. Rehder, A. Larson. 2009. Close approaches by vessels elicit surface active behaviors by southern resident killer whales. Endangered Species Research 8: 179-192.

Nowroozi, B. N., J. A. Strother, J.M. Horton, A.P. Summers, and E.L. Brainerd 2009. Whole body lift and ground effect during pectoral fin locomotion in the northern spearnose poacher (Agonopsis vulsa). Zoology 112:393-402.

Ooishi, S. 2009a. Enteropsis fusiformis, new species (Crustacea: Copepoda: Cyclopoida: Ascidicolidae), living in a compound ascidian from Madagascar–––Proceedings of the
Biological Society of Washington 122(3):333–341.

Ooishi, S. 2009b. Four new species of Haplostoma (Copepoda:Cyclopoida: Ascidicolidae) living in compound ascidians from Madagascar.––Proceedings of the Biological Society of
Washington 122(4):426–44.

Pabst, T., G. Scholtz. 2009. The development of Phyllopodous limbs in Leptostraca and Brachiopoda. Journal of Crustacean Biology 29(1): 1-12.

Paterson G.L.J., Glover A.G., Frojan C.B., Whitaker A., Budaeva N., Chimonides J., Doner
S.A census of abyssal polychaetes. Deep-Sea Research II, 56: 1739–1746.

Rafelski SM, Alberts J.B, Odell G.M. 2009. An experimental and computational study of the effect of ActA polarity on the speed of Listeria monocytogenes actin-based motility. PLoS Comp. Bio. 5(7):e1000434.

Romero, M. R., H. C. Kelstrup, and R. R. Strathmann. Capture of particles by direct interception by cilia during feeding of a gastropod veliger. Biological Bulletin (in press)

Rychel, A.L. and Swalla, B.J. (2009) Stem cells and regeneration in hemichordates. In: Marine Stem Cells, Valeria Matranga and Baruch Rinkevich, ed. Springer Publishing. pp. 245-265.

Satterlie, R.A., J. S. Pearse and K.P. Sebens. 2009. The black box, the creature from  the Black Lagoon, August Krogh, and the dominant animal. Integr. Comp. Biol. 49 (2) 1-4.

Schulze, A. & Rice, M. E. 2009. Nephasoma pellucidum – a model species for sipunculan development? Smithsonian Contributions to Marine Science 38:209-217.

Schulze, A. & Rice, M. E. 2009. Musculature in sipunculan worms: ontogeny and ancestral states. Evolution & Development, 11: 97-108.

Sebens, K.P.  Ed.  2009. San Juan County Marine Stewardship Area Monitoring Plan. Marine Resources Committee, San Juan County, WA. 90 pp.

Smart TI, von Dassow G (2009). Unusual development of the mitraria larva in the polychaete Owenia collaris. Biol. Bull. in press.

Sperling, E.A., Vinther, J., Moy, V.N., Wheeler, B.M., Semon, M., Briggs, D.E.G. And Peterson, K.J., 2009. MicroRNAs resolve an apparent conflict between annelid systematics and their fossil record. Proceedings of the Royal Society London Series B, 276: 4315-4322.

Tudorache, C., A. Jordan A, J. Svendsen, P. Domenici, G.DeBoeck, J.F. Steffensen. 2009. Pectoral fin beat frequency predicts oxygen consumption during spontaneous activity in a labriform swimming fish (Embiotoca lateralis). Environmental Biology of Fishes 84 (1): 121-127.

Vaughn, D. 2009. Predator-induced larval cloning in the sand dollar Dendraster excentricus: Might mothers matter? Biol. Bull 217:103-114.

von Dassow G, Verbrugghe KJ, Miller AL, Sider JR, and Bement WM. 2009. Action at a distance during cytokinesis. J Cell Biol. 187(6):831-45.

von Dassow G. 2009. Concurrent cues for cytokinetic furrow induction in animal cells. Trends in Cell Biology 19(4):165-73.

Yamane, L and S.E. Gilman. 2009. Opposite responses by an intertidal predator to increasing aquatic and aerial temperatures. Marine Ecology Progress Series 393:27-36.

2008

Baruni JK, Munro EM, von Dassow G. (2008) Cytokinetic furrowing in toroidal, binucleate and anucleate cells in C. elegans embryos. J Cell Sci 121:306-16.

Bishop, C.D., A. Pires, D.Y. Boudko, L.L. Moroz, and M.G. Hadfield (2008). Analysis of NO-cGMP signaling during metamorphosis of the nudibranch Phestilla sibogae Bergh (Gastropoda: Opisthobranchia).  Evolution and Development 10: 288-299.

Boulding EG, Culling M, Glebe B, Berg PR, Lien S, Moen T. 2008. Conservation genomics of Atlantic salmon: SNPs associated with QTLs for adaptive trait differences in parr from four trans-Atlantic backcrosses. Heredity 101: 381-391.

Britton-Simmons, KH and KA Abbott. 2008. Short- and long-term effects of disturbance and propagule pressure on a biological invasion. Journal of Ecology 96:68-77.

Britton-Simmons KH, J Eckman, and D Duggins. 2008. Effect of tidal currents and tidal stage on size estimates of Nereocystis luetkeana beds in Washington State. Marine Ecology Progress Series, In Press.

Budaeva N.E. Paradiopatra kirkegaardi – a new species name for P. fauchaldi (Kirkegaard
1988) (Polychaeta, Onuphidae). Zoologicheskij Zhurnal, 87: 1034–1040. (in Russian)

Burnaford, J. L., and M. Vasquez*. 2008. Solar radiation plays a role in habitat selection by the sea star Pisaster ochraceus. Marine Ecology Progress Series 368:177-187.

Carrington, E. 2008. Along the silk road, spiders make way for mussels. Trends in Biotechnology 6: 55-57.

Collins AG, Bentlage B, Lindsay D, Haddock SHD, Lindner A, Norenburg JL, Jarms G,
Jankowski T, and Cartwright P (2008) Phylogenetics of Trachylina (Cnidaria, Hydrozoa) with new insights on the evolution of some problematical taxa. Journal of the Marine Biological Association of the United Kingdom 88: 1673-1685

Craig, C., S. Wyllie-Echeverria, E. Carrington, and D. Shafer, 2008. Sediment burial effects on the seagrass Phyllospadix scouleri. US Geological Survey, Technical Note.

Foe VE and von Dassow G (2008). Stable and dynamic microtubules coordinately shape the myosin activation zone during cytokinetic furrow formation. J. Cell Biol. 183: 457-470.

G.O Mackie & R.W. Meech. (2008). Nerves in the endodermal canals of hydromedusae and their role in swimming inhibition. Invert Neurosci. 8, 199-209.

Greene, C.H., A.J. Pershing, T.M. Cronin, and N. Cecci. In press. 2008. Arctic climate change and its impacts on the ecology of the North Atlantic. Ecology.

Grünbaum D, K Chan, E Tobin & MT Nishizaki. 2008. Non-linear advection–diffusion equations approximate swarming but not schooling populations. Mathematical Biosciences 214: 38-48.

Hofmann G.E., S.D. Gaines.  2008 New tools to meet new challenges: Emerging technologies for managing marine ecosystems for resilience. BioScience 58: 43-52.

Holt, M.M. 2008. Sound exposure and Southern Resident killer whales (Orcinus orca): A review of current knowledge and data gaps. U.S. Department of Commerce, NOAA Technical Memorandum NMFS-NWFSC-89, 59 p.

Iwata, F. 2008. On three monostiliferous hoplonemerteans from the San Juan Archipelago, Washington State, U.S,A. Publications of the Seto Marine Biological Laboratory 40 (5/6): 9-45.

Iwata, F. 2008. Cerebratuliopsis venusta, new genus, new species, a marine heteronemertean from Washington state, U.S.A. Proceedings of the Biological Society of Washington (Submitted).

Iyengar, E.V., Sitvarin*, M.I., and M. Cataldo*. 2008. Function of the flexible periostracal hairs in Trichotropis cancellata (Mollusca, Gastropoda). Invertebrate Biology. 127: 299-313.

Iyengar, E.V. 2008.  Kleptoparasitic interactions throughout the animal kingdom and a re-
evaluation, based on participant mobility, of the conditions promoting the evolution of kleptoparasitism.  Biological Journal of the Linnean Society. 93: 745-762.

Iyengar, E.V. 2008. Suspension feeding and kleptoparasitism within the genus Trichotropis
(Gastropoda: Capulidae). Journal of Molluscan Studies 74: 55-62.

Iyengar V.K., Starks B.D.*  2008. Sexual selection in harems: male competition plays a larger role than female choice in an amphipod.  Behavioral Ecology 19: 642-649.

Jacobs, M.W., B.M. Degnan, J.D.D. Bishop, R.R. Strathmann. 2008. Early activation of adult organ differentiation during delay of metamorphosis in solitary ascidians, and consequences for juvenile growth. Invertebrate Biology 127(2): 217-236.

Jenkins, S,  Sebens, K.P. et al. 2008. Comparisons of the ecology of shores across the North Atlantic: do differences in players matter for process? Ecology 89(11): S3-S23

Lambert, C. 2008. Signaling pathways in ascidian oocyte maturation: the role of cAMP and follicle cells in germinal vesicle breakdown. Development Growth and Differentiation 50(3).

Levin S.A, J. Lubchenco. 2008. Resilience, robustness, and marine ecosystem-based management. BioScience 58: 27-32.

Littlefield RS, and Fowler VM (2008) Thin Filament Length Regulation In Striated Muscle Sarcomeres: Pointed-End Dynamics Go Beyond A Nebulin Ruler. Seminars in Cell and Developmental Biology, 19:511-519.

Mackie, G.O. 2008. Immunostaining of peripheral nerves and other tissues in whole mount preparations from hatchling cephalopods. Tissue & Cell 40(1),21-29.

Mackie, G.O. and Meech, R.W. 2008.  Nerves in the endodermal canals of hydromedusae and their role in swimming inhibition. Invert. Neurosci. 8, 199-209

Mills, C.E., 2008. Ctenophora. pp. 102-104 In Checklist delle specie della fauna italiana,
second edition. (G. Relini, editor). Biol. Mar. Mediterr., 15 (suppl.): 104-106.

Odell GM and Foe VE (2008). An agent-based model contrasts opposite effects of dynamic and stable microtubules on cleavage furrow positioning. J. Cell Biol. 2008 183: 471-483

O'Neill, K, Sebens, KP, Heidelberg, KB. 2008. Diel Patterns of Abundance and Vertical Distribution of Zooplankton over a Florida Coral Reef. Abstracts, 11th Int. Coral Reef Symposium, Ft.Lauderdale, Reefs For the Future, July 2008. p. 462

Ooishi, S. 2008a. Haplostomids gottoi, new species (Crustacea: Copepoda: Cyclopoida: Ascidicolidae), living in a compound ascidian from Madagascar. Proceeding of the Biological Society of Washington 121(1):

Ooishi, S. 2008b. Female Enteropsis roscoffensis Chatton & Brément (Crustacea; Copepoda: Cyclopoida: Ascidicolidae),living in the solitary ascidian Dendrodoa grossuralia.
Proceeding of the Biological Society of Washngton 121(4):501-511.

Ooishi, S. 2008c. Female and male Mychophilus roseus Hesse (Crustacea: Copepoda: Cyclopoida: Ascidicolidae) living in the compund ascidian Botryllus schlosseri.––Proceeding of the Biological Society of Washington 121(4):502-530.

Palumbi S.R., K.L. McLeod, D. Grunbaum.  2008.  Ecosystems in action: Lessons from marine ecology about recovery, resistance, and reversibility. BioScience 58: 33-42.

Pernet, B., *A. Deconinck, *A. Llaban, and J. Archie.  2008.  Evaluating risks associated with
transport of the ghost shrimp Neotrypaea californiensis as live bait.  Marine Biology 153:1127-1140

Rogers-Bennett, L. and D.W. Rogers 2008. Modeling dispersal of cloning echinoderm larvae with a Gaussian distribution: Forever young? CalCOFI Reports 49:232-240.

Ruckelshaus, M., T. Klinger, N. Knowlton N, D.P. DeMaster. 2008 Marine ecosystem-based management in practice: Scientific and governance challenges. BioScience 58: 53-63.

Selting, K., E. Carrington and S. Wyllie-Escheverria, 2007. Physiological performance of Zostera marina in response to stress: importance of analysis in assessing declining populations. Eelgrass Stressor-Response Project, 2005-2007 Report. Washington State Department of Natural Resources. 84-93.

Siamakpour-Reihani, S., H.J. Argiros, L.J. Wilmeth, L.L. Haas, T.A. Peterson, D.L. Johnson, C.B. Shuster, B.A. Lyons.  2008.  The cell migration protein Grb7 associates with transcriptional regulator FHL2 in a Grb7 phosphorylation-dependent manner.  Journal of Molecular Recognition. 1: 9-17

Smith, C. R. , F. C. De Leo, A. F. Bernardino, A. K. Sweetman and P. Martinez Arbizu. 2008. Abyssal food limitation, ecosystem structure and climate change. Trends in Ecology and Evolution 23: 518-528.

Sophie B. George, Colleen Fox & Stuart Wakeham 2008. Fatty acid composition of larvae of the sand dollar Dendraster excentricus (Echinodermata) might reflect FA composition of the diets Aquaculture 285: 167-173.

Strathmann R. R., G. P. Foley Jr., and A. N. Hysert. 2008. Loss and gain of the juvenile rudiment and metamorphic competence during starvation and feeding of bryozoan larvae. Evolution & Development 10: 731-736.

Stricker, S.A. 2009a. Roles of protein kinase C isotypes during seawater- vs. cAMP-induced oocyte maturation in a marine worm. Mol. Reprod. Dev. 76: 693-707.

Stricker, S.A. 2009b. Interactions between mitogen-activated protein kinase and protein kinase C signaling during oocyte maturation and fertilization in a marine worm. Mol. Reprod. Dev. 76: 708-721.

Stumpff J, von Dassow G, Wagenbach M, Asbury C, and Wordeman L. (2008) The kinesin-8 motor Kif18A suppresses kinetochore movements to control mitotic chromosome alignment. Dev. Cell 14:252-62

Swalla, B. J. and Smith, A. B. 2008. Deciphering Deuterostome Phylogeny: Molecular, morphological and palaeontological perspectives. Phil. Trans. R. Soc. B 363: 1557-1568.

Vaughn, D. and Strathmann, R.R. 2008. Predators induce cloning in echinoderm larvae. Science 319: 1503.

Zahradnik T, Lemay M, Boulding EG. 2008. Choosy males in a littorinid gastropod: male Littorina subrotundata prefer large and virgin females. J Moll Stud 74: 245-251.

Varela, C. and Schulze, A. 2008. Updated checklist of sipunculans (Phylum Sipuncula) of Cuba. Cocuyo, 17: 9-10.


2007

Pernet, B., *A. Deconinck, *A. Llaban, and J. Archie.  2008.  Evaluating risks associated with
transport of the ghost shrimp Neotrypaea californiensis as live bait.  Marine Biology 153:1127-1140

Pernet, B.  2007.  Determinate growth and variable size at maturity in the marine gastropod
Amphissa columbianaAmerican Malacological Bulletin 22:7-15

Aronowicz, J. 2007. The “agitator:" an inexpensive device for culturing large numbers of fragile marine invertebrate larvae. Mar. Biol. 151: 1137-141.

Bentlage B, Wörheide G (2007) Low genetic structuring among Pericharax heteroraphis (Porifera: Calcarea) populations from the Great Barrier Reef (Australia), revealed by analysis of nrDNA and nuclear intron sequences. Coral Reefs 26: 807-816

Boller, M.L. and E. Carrington, 2007. Interspecific comparison of hydrodynamic performance and structural properties among intertidal algae. J. Exp. Biology 210:1874-1884.

Brown, F. D. and B. J. Swalla.  2007. Vasa is expressed in germ cells and in cells circulating in the blood of a colonial ascidian, Botrylloides violaceus. Evol. & Develop. 9(2): 165-177.

Bulinski, K.V. 2007, The shell-selection behavior of hermit crabs in isolation, competition, and predatory settings. J. Shellfish Res. 26: 233-239.

Burkel BM, von Dassow G, Bement WM. (2007) Versatile fluorescent probes for actin filaments based on the actin-binding domain of utrophin. Cell Motil Cytoskeleton 64:822-32.

Cintra-Buenrostro, C. E. 2007. Trampling, peeling and nibbling mussels: an experimental assessment of mechanical and predatory damage to shells of Mytilus trossulus (Mollusca: Mytilidae). J. Shellfish Res. 26: 221-231.

Davenport, C.M., Detwiler, P.B., and Dacey, D. Effect of pH buffering on horizontal and ganglion cell light responses in primate retina: Evidence of the proton hypothesis of surround formation. J. Neuroscience (In Press). 2007

Dethier, M.N., J. Ruesink, H. Berry, A. G. Sprenger, B. Reeves. Subtle stressors and biotic gradients on an estuarine shoreline. Estuaries and Coasts. (submitted 2007)

Dethier, M.N.. Does variation in recruitment drive diversity patterns along an estuarine gradient? Ecology. (submitted 2007).

Dethier, M.N. 2007. Two invited chapters in: M.W. Denny and S.D. Gaines, eds. Encyclopedia of Tidepools and Rocky Shores. University of California Press, Berkeley.

Dimond, J. and E. Carrington, 2007. Temporal variation in the symbiosis and growth of the temperate scleractinian coral, Astrangia poculata. Marine Ecology Progress Series 348:161-172.

Ding, Y-X., W-C. Chin, P. Verdugo. 2007. Development of a fluorescence quenching assay to measure the fraction of organic carbon present in self-assembled gels in seawater. Marine Chemistry 106: 456-462.

Engie, K., T. Klinger. 2007. Modeling passive dispersal through a large estuarine system to evaluate marine reserve network connections. Estuaries and Coasts 30: 201-213.

Fernandes, R.J., M. Weis, M. Scott, R. Seegmiller, D. Eyre. Collagen XI chain misassembly in cartilage of the chondrodysplasia (cho) mouse. 2007. Matrix Biology 26: 597-603.

George, S. B., and D. Walker. 2007. Short-term fluctuation in salinity promotes rapid development and metamorphosis of Dendraster excentricus larvae J. Exp. Mar. Biol. Ecol. 348:113-130.

Glantz, R. M., and J. P. Schroeter. 2007. Orientation by polarized light in the crayfish dorsal light reflex: Behavioral and neurophysiological studies. J. Comp. Physiol. 193: 371-384.

Glantz, R. M. 2007. The distribution of polarization sensitivity in the crayfish retinula. J. Comp. Physiol. 193: 893-901.

George, S. and Walker, D. 2007. Short-term fluctuation in salinity promotes rapid development and metamorphosis of Dendraster excentricus larvae Journal of experimental marine Biology and Ecology. 348:113-130.

Greene, C.H., and A.J. Pershing. 2007. Climate drives sea change. Science 315: 1084-1085.

Grosberg, R. K., and R. R. Strathmann. 2007. The evolution of multicellularity: a minor major transition? Annu. Rev. Ecol. Evol. Syst. 38: 621-654.

Hadfield, M. G., A. Faucci, and M. A. R. Koehl. (2007) Measuring recruitment of minute larvae in a complex field environment: The corallivorous nudibranch Phestilla sibogae (Bergh). J. Exp. Mar. Biol. Ecol. 338: 57-72.

Huntley, J. W. 2007. Towards establishing a modern baseline for paleopathology: Trace-producing parasites in a bivalve host. J. Shellfish Res. 26: 253-259.

Iwata, F. 2007. Cyanonemertes elegans, new genus, new species, a marine hoplonemertean from Washington state, U. S. A. Proc. Biol. Soc. Washington 120: 197-213.

Koehl, M. A. R., J. A. Strother, M. A. Reidenbach, J. R. Koseff and M. G. Hadfield. (2007) Individual-based model of larval transport to coral reefs in turbulent, wave-driven flow: Behavioral responses to dissolved settlement inducer. Mar. Ecol. Prog. Ser. 335: 1-18.

Kowalewski, M., and L. R. Leighton. 2007. Predator-prey interactions: Experimental and field approaches. Journal of Shellfish Research, 26: 217-220.

Koy, K. A. 2007. Shell-less Nucella lamellosa (Gmelin) from the rocky intertidal of San Juan Island, WA. J. Shellfish Res. 26: 267-269.

Kozloff, E. N.  2007. Stages of development, from first cleavage to hatching, of an Echinoderes (Phylum Kinorhyncha: Class Cyclorhagida). Can. Biol. Mar. 48: 199-206.

Krahn, M., M. B. Hanson, R. Baird, R. Boyer, D. Burrows, C. Emmons, J. Ford, L. Jones, D. Noren, P. Ross, G. Schorr, T. Collier. Persistent organic pollutants and stable isotopes in biopsy samples (2004/2006) from Southern Resident killer whales. Marine Pollution Bulletin 54 (2007) 1903-1911.

Lambert, G. 2007. The nonindigenous ascidian Molgula ficus in California. Cahiers de Biologie Marine 48: 95-102.

Marko, P. B.,  L. Rogers-Bennett, and A. B. Dennis. 2007. MtDNA population structure and gene flow in lingcod (Ophiodon elongates): limited connectivity despite long-lived pelagic larvae. Mar. Biol. 150: 1301-1311.

Marques, A.C., A.E. Migotto, D.R. Calder and C.E. Mills, 2007. Key to the polypoid stages of Hydrozoa.  pp. 118-137 and 151-168, with 11 plates. In Light and Smith's Manual: Intertidal Invertebrates of the Central California Coast. Fourth Edition (J.T. Carlton, editor). University of California Press, Berkeley.

Meech, R. W., and G.O. Mackie. 2007. Evolution of excitability in lower metazoans. In: Invertebrate Neurobiology; edited by Geoffrey North, Ralph J. Greenspan. Cold Spring Harbor Laboratory Press, New York.

Mills, C.E. and S.H.D. Haddock, 2007. Ctenophores.  pp. 189-199, with 5 plates. In Light and Smith's Manual: Intertidal Invertebrates of the Central California Coast. Fourth Edition (J.T. Carlton, editor). University of California Press, Berkeley.

Mills, C.E., S.H.D. Haddock, C.W. Dunn and P. R. Pugh, 2007. Siphonophores.  pp. 150-154 and 164-166, with 3 plates. In Light and Smith's Manual: Intertidal Invertebrates of the Central California Coast. Fourth Edition (J.T. Carlton, editor). University of California Press, Berkeley.

Mills, C.E. and R.J. Larson, 2007. Scyphozoa: Scyphomedusae, Stauromedusae, and Cubomedusae.  pp. 168-173, with 3 plates. In Light and Smith's Manual: Intertidal Invertebrates of the Central California Coast. Fourth Edition (J.T. Carlton, editor). University of California Press, Berkeley.

Mills, C.E. and J.T. Rees, 2007. Hydromedusae.  pp. 137-168, with 9 plates. In Light and Smith's Manual: Intertidal Invertebrates of the Central California Coast. Fourth Edition (J.T. Carlton, editor). University of California Press, Berkeley.

Mills, C.E. and Y.M. Hirano, 2007. Hydromedusae. pp. 286-288. In Encyclopedia of Tidepools and Rocky Shores (M.W. Denny and S.D. Gaines, editors). University of California Press, Berkeley.

Mills, C.E. and Y.M. Hirano, 2007. Stauromedusae. pp. 539-541. In Encyclopedia of Tidepools and Rocky Shores (M.W. Denny and S.D. Gaines, editors). University of California Press, Berkeley.

Moran, A.L. and H.A. Woods. 2007. Oxygen in egg masses: interactive effects of temperature, age, and egg-mass morphology on oxygen supply to embryos. J. Exp. Biol. 210: 722-731.

Marko, P.B., Rogers-Bennett, L. and A.B. Dennis. 2007. MtDNA population structure and gene flow in lingcod (Ophiodon elongatus): limited connectivity despite long-lived pelagic larvae. Marine Biology 150:1301-1311.

Munro, E. M.  2007. The microtubules dance and the spindle poles swing. Cell. 2007 May 4;129(3):457-8. 

Munro, E. M. 2007. Asymmetric cell division: A CAB driver for spindle movements. Curr Biol. Aug 21;17(16):R639-R641. 

Nishizaki, M.T. & J.D. Ackerman. 2007. Juvenile-adult associations in sea urchins (Strongylocentrotus franciscanus and S. droebachiensis): Protection from predation and hydrodynamics in S. franciscanus? Marine Biology 151: 135-145.

Ooishi, S. 2007. Female Ascidicola rosea Thorell (Copepoda : Cyclopoida) living in solitary ascidians. J. Crustacean Biol. 27: 327-338.

Ooishi, S. 2007b. Female nd male of Enterocola fulgens van Beneden (Crustacea: Copepoda: Cyclopoida) living in thecompound ascidian Polyclinum aurantium Milen Edwards.——
Proceedings of the Biological Society of Washington 120(3):293-310.

Orellana, M.V., Petersen, T.W., Dierks, A.H., Donohue, S., Verdugo, P., and van den Eng, G. 2007. Marine microgels: Optical and proteomic Fingerprints. Marine Chemistry 106: 229-239.
Padilla, D. K. 2004. Form and function of radular teeth of herbivorous molluscs: Focus on the future. Am. Malacological Bull. 18: 163-168.

Pechenik, J.A., D.E. Cochrane, W. Li, E.T. West, A. Pires, and M. Leppo. 2007. NO inhibits metamorphosis in larvae of the slippershell snail Crepidula fornicata. Biol. Bull. 213: 160-171.

Pernet, B.  2007.  Determinate growth and variable size at maturity in the marine gastropod Amphissa columbiana.  American Malacological Bulletin 22:7-15.

Pfister, C.A. 2007. Intertidal invertebrates locally enhance primary production. Ecology 88(7): 1647-1653.

Pirtle, T.J. and Satterlie, R.A. (2007). The role of postinhibitory rebound in the locomotor central-pattern generator of Clione limacina. Integr. Comp. Biol. 47: 451-456.

Roberts, B., G. MacMaster, E. Ma, S. Smith Wallace, V. Lockhart, and B.J. Swalla. 2007. A complement response may activate metamorphosis in the ascidian Boltenia villosa. Dev. Genes & Evol. 217: 449-458.

Rodrigues, S. C. 2007. Biotic interactions recorded in shells of recent Rhynchonelliform brachiopods from San Juan Island, USA. J. Shellfish Res., 26: 241-252.

Roe, P., Norenburg, J. L. and Maslakova, S. A. 2007. Nemertea. In: The Light and Smith Manual, 4th Edition. J. Carlton (Ed.). Pp. 182-196 (Plates 86-90).

Rogers-Bennett, L. 2007. Is climate change contributing to range reductions and localized extinctions in northern, Haliotis kamtschatkana kamtschatkana, and flat, H. walallensis, abalones? Bull. Mar. Sci. 81:283-296.

Rogers-Bennett, L., Rogers, D.W. and S. Schultz. 2007. Modeling growth and mortality of red abalone (Haliotis rufescens) in northern California. J. Shellfish Res. 26:719-727.

Rutherford, S., Y. Hirate. and Swalla, B.J. 2007. The Hsp90 capacitor, developmental remodeling and evolution. Critical Reviews in Biochemistry and Mol. Biol. 42: 1-18.

Rychel, A. L. and Swalla, B. J. 2007. Development and evolution of chordate cartilage. J. Exp. Zool. B Mol. Dev. Evol. 308B: 325-335.

Schroeder, T. Rediscovering a coastal prarie near Friday Harbor. Pacific Northwest Quarterly 98:2. Spring 2007.

Schulze, A., Cutler, E. B. & Giribet, G. 2007. Phylogeny of sipunculan worms: a combined analysis of four gene regions and morphology. Molecular Phylogenetics and Evolution, 42: 171-192

Shafer, D., S. Wyllie-Echeverria and T. Sherman 2007. Do desiccation tolerances control the vertical distribution of intertidal seagrasses? Aquatic Botany 87:161-166.

Soo, F.S., Detwiler, P.B., and Rieke, F.M. Light adaptation in salamander L-cone photoreceptors. J. Neuroscience (In Press) 2007

Spuches, A.M., H.J. Argiros, K.H. Lee, L. L. Haas, S.C. Pero, D.N. Kragg, P.P. Roller, D.E. Wilcox, B.A. Lyons.  2007.  Calorimetric Investigation of Phosphorylated and Non-Phosphorylated Peptide Ligand Binding to the Human Grb7-SH2 Domain.  Journal of Molecular Recognition. 4: 245-252

Stempien, J. 2007. Detecting avian predation on bivalve assemblages using indirect methods. J. Shellfish Res. 26: 271-280.

Stickle, W. B., E. N. Kozloff, and S. Story. 2007. Physiology of the ciliate Orchitophrya stellarum and its experimental infection of Leptasterias spp. Can. J. Zool. 85: 201-206

Stickle WB, E. N. Kozloff, and M. C. Henk. 2007. The ciliate Orchitophrya stellarum viewed as a facultative parasite of asteriid sea stars. Cah. Biol. Mar. 48: 9-16.

Strathmann, M. F., and R. R. Strathmann. 2007. An extraordinarily long larval duration of 4.5 years from hatching to metamorphosis for teleplanic veligers of Fusitriton oregonensis. Biol. Bull. 213: 152-159.

Strathmann, R. R. 2007. Time and extent of ciliary response to particles in a non-filtering feeding mechanism. Biol. Bull. 212: 93-103.

Strathmann, R. R. 2007. Three functionally distinct kinds of pelagic development. Bull. Mar. Sci. 81: 167-179.

Swalla, B.J. 2007. “New insights into vertebrate origins” In: Principles of Developmental Genetics, Sally Moody, ed. Elsevier Press (San Diego, Elsevier) pp. 114-128.

Vaughn, D. 2007. Predator-induced morphological defenses in marine zooplankton: A larval case study. Ecology 88: 1030-1039.

Verdugo, P. 2007. Dynamics of marine biopolymer networks. Polymer Bull. 58: 139-143.

Werner M, Munro EM, Glotzer M (2007) Astral signals spatially bias cortical myosin recruitment to break symmetry and promote cytokinesis. Curr Biol. 17:1286-97.

Willman, S. 2007. Testing the role of spines as predatory defense. J. Shellfish Res. 26: 261-266.

Wordeman L, Wagenbach M, von Dassow G. (2007) MCAK facilitates chromosome movement by promoting kinetochore microtubule turnover. J Cell Biol. 179:869-79.

2006

Badgley, B.D., F. Lipschultz and K. P. Sebens. 2006. Nitrate uptake by the reef coral Diploria strigosa : effects of concentration, water flow, and irradiance. Marine Biology 149:229-238.

Bang, M.-L., Li, X., Littlefield, R., Bremner, S., Thor, A., Knowlton, K. U., Lieber, R. L., and J. Chen (2006) Nebulin-deficient mice exhibit shorter thin filament lengths and reduced contractile function in skeletal muscle. J. Cell Biol., 173:905-16.

Bement, W. M., A. L. Miller, and G. von Dassow. 2006. Rho GTPase activity zones and transient contractile arrays.  Bioessays 28: 983-93.

Berke, S. K., M. Miller, and S. A. Woodin. 2006. Modelling the energy-mortality tradeoffs of invertebrate decorating behaviour. Evolutionary Ecology Research 8: 1409-1425.

Bishop, C. D., D. F. Erezyilmaz, T. Flatt, C. D. Georgiou, M. G. Hadfield, A. Heyland , J. Hodin, M. W. Jacobs, S. A. Maslakova, A. Pires, A. M. Reitzel, S. Santagata, K. Tanaka, and J. H. Youson. 2006. What is metamorphosis? Integrative and Comparative Biology 46: 655-661.

Britton-Simmons, K. H. 2006. Functional group diversity, resource preemption and the genesis of invasion resistance in a community of marine algae. Oikos 113: 395-401.

Cannas, M., J. Schaefer, P. Domenici, and J. F. Steffensen. 2006. Gait transition and oxygen consumption in swimming striped surf perch (Embiotoca lateralis). J. Fish Biol. 69: 1612-1625.

Collins AG, Bentlage B, Matsumoto GI, Haddock SHD, Osborn K, Schierwater B (2006)
Solution to the phylogenetic enigma of Tetraplatia, a worm-shaped cnidarian. Biology Letters 2: 120-124

Dean, M.N., and A.P. Summers. 2006. Mineralized cartilage in the skeleton of cartilaginous fishes. Zoology 109: 164-168.

Dethier, M.N. and G.C. Schoch. 2006. Taxonomic sufficiency in distinguishing natural spatial patterns on an estuarine shoreline. Mar. Ecol. Prog. Ser. 306: 41-49.

Emlet, R. B. 2006. Direct development of the brittle star Amphiodia occidentalis (Ophiuroidea, Amphiuridae) from the northeastern Pacific Ocean. Invert. Biol. 125: 154-171.

Freeman, G. 2006. Oocyte and egg organization in the patellogastropod Lottia and its bearing on axial specification during early embryogenesis. Develop. Biol. 295: 141-155.

Fresh, K.L., T. Wyllie-Echeverria, S. Wyllie-Echeverria and B. W. Williams. 2006. Using light-permeable grating to mitigate impacts of residential floats on eelgrass Zostera marina L. in Puget Sound, Washington. Ecological Engineering 28: 354-362.

Glantz, R. M., and J. P. Schroeter. 2006. Polarization contrast and motion detection. J. Comp. Physiol. 192: 905-914.

Goehner, N., H. Kelstrup, L. Kvalheim, K. Zumwalt, D. Erezyilmaz, and L.M. Riddiford. 2006.  The search for the transcription factor Broad in non-insectan arthropods.  Integ. Comp. Biol. 45, 1138.

Griffiths, J., M. Dethier, A. Newsom, J. E. Byers, J. Meyer, F. Oyarzun, and H. Lenihan. 2006. Invertebrate community responses to recreational clam digging. Mar. Biol. 149: 1489-1497.

Hacker, S.D. and M.N. Dethier. 2006. Community modification by a grass invader has differing impacts for marine habitats. Oikos 113:279-286.

Iwata, F. 2006. On four monostiliferous hoplonemerteans, including three new genera and species from Washington state and British Columbia. J. Nat. Hist. 40: 873-913.

Klinger, T., D. K. Padilla, and K. H. Britton-Simmons. 2006. Marine invaders achieve higher densities in reserves. Aquatic Conservation: Marine and Freshwater Ecosystems 16: 301-311.

Leys, S.P. and Meech, R.W. (2006). Physiology of coordination in sponges. Can. J. Zool. 84, 288-306.

Leys, S.P., Mackie, G.O. and Reiswig, H.M. 2006. Biology of glass sponges. Adv. Mar. Biol. 52, 1-145.

Mackie, G.O. 2006. Progress in sponge biology.  Can. J. Zool. 84, 143-145.

Mackie, G.O., Burighel, P. Caicci, F. and Manni, L. 2006. Innervation of ascidian siphons and their responses to stimulation. Can. J. Zool.  84, 1146-1162.

Manni, L., Mackie, G.O., Caicci, F., Zaniolo, G. and Burighel, P. 2006. Coronal organ of ascidians and the evolutionary significance of secondary sensory cells in chordates. J. Comp. Neurol. 495, 363-373.

Meech, R.W. and Mackie, G.O. 2006. Ionic currents in the myoepithelium of Aglantha digitale. The FASEB Journal Vol 20, No 4,  p.A826, Abstract No 492.2

Merz, R. A. and S. A. Woodin. 2006. Polychaete chaetae: Function, fossils, andphylogeny. Integrative and Comparative Biology 46(4); 481-496.

Munro, E. M. F. Robin, and P. Lemaire. 2006. Cellular morphogesis in ascidians. Curr Opin Genet Dev. 16(4):399-405.

Munro EM. (2006) PAR proteins and the cytoskeleton: a marriage of equals. Curr Opin Cell Biol. 18:86-94.

Murray, J. A., F. Robin, and P, Lemaire. 2006. Advances in neural bases of orientation and navigation. Integr. Comp. Biol. 46: 871-879.

Norekian T. P., A. Y. Malyshev. 2006. Neural mechanisms underlying co-activation of functionally antagonistic motoneurons during a Clione feeding behavior. J. Neurophysiol. 95: 2560-2569.

Ooishi S. 2006.  Loboixys ryukyuensis (Crustacea : Copepoda : Cyclopoida : Notodelphyidae), a new genus and species, living in the compound ascidian Diplosoma virens at Okinawa, Japan. Proc. Biol. Soc. Washington 119: 373-383.

Ooishi S. 2006. Two species of Botryllophilus (Copepoda : Cyclopoida) living in compound ascidians, and a revision of female morphotype A of the genus. J. Crustacean Biol. 26: 23-47

Paglianti, A., and P. Domenici. 2006. The effect of size on the timing of response in the visually-mediated escape behavior of staghorn sculpins. J. Fish Biol. 68:1-15.

Pernet, B. and L. McArthur.  2006.  Feeding by larvae of two different developmental modes in the annelid Streblospio benedictiMarine Biology 149:803-811.

Pirtle, T.J. and Satterlie, R.A. (2006). The contribution of the pleural type 12 interneuron to swim acceleration in Clione limacina. Invert. Neurosci. 6: 161-168.

Quesada, I., Chin, W-C., & P. Verdugo. 2006. Mechanisms of signal transduction in photo-stimulated secretion in Phaeocystis globosa. FEBS Letters 580:2201-2206.

Rogers-Bennett, L. and D.W. Rogers. 2006. Estimating growth transitions for stage-based matrix models of endangered species with limited data. Ecological Modelling 195:237-246.

Rychel A.L., S.E. Smith, H.T. Shimamoto and Swalla, B.J. 2006. Evolution and development of the chordates: Collagen and pharyngeal cartilage. Mol. Biol. Evol. 23(2):1-9.

Schiopu, D., S. B. George, and J. Castell. 2006. Ingestion rates and dietary fatty acid composition of Dendraster excentricus larvae. J. Exp. Mar. Biol. Ecol. 328:47-75.

Strathmann, R. R. 2006. Versatile ciliary behaviour in capture of particles by the bryozoan Cyphonautes larva. Acta Zoologica 87: 83-89.

Strathmann, R. R., L. R. Kendall, and A. G. Marsh. 2006. Embryonic and larval development of a cold adapted Antarctic ascidian. Polar Biol. 29(6): 495-501

Strathmann, R. R., and D. Grünbaum. 2006. Good eaters, poor swimmers: compromises in larval form. Integrative Comp. Biol. 46(3): 312-322.

Stricker, S.A. 2006. Structural reorganizations of the endoplasmic reticulum during egg maturation and fertilization. Sem. Cell Dev. Biol. 17: 303-313

Stricker, S.A., and T. L. Smythe. 2006. Differing mechanisms of cAMP- versus seawater-induced oocyte maturation in marine nemertean worms I. The roles of serine/threonine kinases and phosphatases. Mol. Reprod. Dev. 73: 1578-1590.

Stricker, S.A., and  T. L. Smythe. 2006. Differing mechanisms of cAMP- versus seawater-induced oocyte maturation in marine nemertean worms II. The roles of tyrosine kinases and phosphatases. Mol. Reprod. Dev. 73: 1564-1577.

Swalla, B.J. 2006. Building divergent body plans with similar genetic pathways Heredity 97: 235-243.

Talbot, S. L., S.Wyllie-Echeverria, D. H. Ward, J. R. Rearick, G. K. Sage, B. Chesney, and R. C. Phillips 2006. Genetic characterization of Zostera asiatica Miki reported on the Pacific coast of North America. Aquatic Botany 85:169-176.

von Dassow, M. 2006. Function-dependent development in a colonial animal. Biological Bulletin. 211: 76-82.

Waldbusser GG, Marinelli RL. 2006. Macrofaunal modification of porewater advection: role of species function, species interaction, and kinetics. Mar. Ecol. Prog. Ser. 311: 217-231

Willis J. H., E. M. Munro, R. Lyczak, and B. Bowerman. 2006. Conditional dominant mutations in the C. elegans gene act-2 identify cytoplasmic and muscle roles for a redundant actin isoform. Mol. Biol. Cell. 17(3):1051-64.

Woodward, O.M., and A.O. Dennis Willows.  2006.  Nervous control of ciliary beating by chloride, calcium and calmodulin in Tritonia diomedea.  J. Exp. Biol.  209:2765-2773.

Woodward, O.M. and Willows A.O.D. 2006.  Dopamine  modulation of calcium dependent chloride current regulates ciliary beat frequency controlling locomotion in Tritonia diomedea.  J. Exp. Biol.  209:2749-2764.

Wyeth, R. C., and A. O. D. Willows. 2006.  Odours detected by rhinophores mediate orientation to flow in the nudibranch mollusc, Tritonia diomedea. J. Exp. Biol. 209: 1441-1453.

Wyeth, R., and A. O. Dennis Willows  2006. Field behavior of the nudibranch mollusc Tritonia diomedea.  Biol. Bull. 210: 81-96.

Wyeth, R., O. Woodward and A. O. D. Willows  2006. Orientation and navigation relative to water flow, prey, conspecifics, and predators by the nudibranch mollusc Tritonia diomedea.  Biol. Bull. 210: 97-108.

Zeng, L., M. Jacobs, B.J. Swalla. 2006. Coloniality and sociality has evolved once in Stolidobranch ascidians. Integr. Biol. 46: 255-268.

2005

Baird, R. W., M. B. Hanson, and L. M. Dill. 2005. Factors influencing the diving behaviour of fish-eating killer whales: sex differences and diet and inter-annual variation in diving rates. Can. J. Zool. 83:257-267.

Bement, W.M., H.A. Benink , and G. von Dassow. 2005. Britton-Simmons, K. H. 2004. Direct and indirect effects of the introduced alga, Sargassum muticum on benthic, subtidal communities of Washington State, USA. Mar. Ecol. Prog. Ser. 277: 61-78.

Bement WM, Benink, H.A., von Dassow, G. (2005) A microtubule-dependent zone of active RhoA during cleavage plane specification. J Cell Biol. 170:91-101. [PDF]

Blackwell JS, Murray JA (2005) Neuronal responses to water flow in the marine slug Tritonia diomedea, Impulse [Online
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Byers, J. E.  2005.  Marine reserves enhance abundance but not competitive impacts of a harvested nonindigenous species.  Ecology 86: 487-500.

Carney L., J. R. Waaland, T. Klinger, B. K. Ewing. 2005. Factors limiting the restoration of the bull kelp Nereocystis luetkeana in nearshore rocky habitats. Mar. Ecol. Prog. Ser. 302: 49-61.

Chea, H., C.V. Wright and B.J. Swalla. 2005. Nodal signaling and the evolution of deuterostome gastrulation. Dev. Dynamics. 234: 269-278.  

Chin, W-C., I. Quesada, J. Steed, & P. Verdugo. 2005. Modeling Ca-polyanion crosslinking in secretory networks. Assessment of charge density and bond affinity in polyanionic secretory networks.  Macromol. Symp. 227: 89-96.

Collin, R., Diaz, M.C., Norenburg, J., Rocha, R.M., Sanchez, J.R., Schulze, A., Schwartz, M. and Valdes, A. 2005. Photographic identification guide to some common marine invertebrates of Bocas del Toro, Panama. Caribbean Journal of Science, 41: 638-707.

Dethier, M.N. and G.C. Schoch. 2005. The consequences of scale: assessing the distribution of benthic populations in a complex estuarine fjord. Estuar. Coastal and Shelf Science. 62: 253-270.

Dethier, M.N., S.L. Williams, and A. Freeman. 2005. Seaweeds under stress: manipulated stress and herbivory affect critical life history functions. Ecol. Monogr. 75: 403-418.

Dethier, M.N. and S.D. Hacker. 2005. Physical factors vs. biotic resistance in controlling the invasion of an estuarine marsh grass. Ecol. Applications. 15: 1273-1283.

Halos, D. S., A. Hart,  H. Hsu, P. Hershberger, R. Kocan  2005.  Ichthyophonus in Puget Sound Rockfish, Sebastes emphaeus, from the San Juan Archipelago and Puget Sound, Washington, USA.  J. Aquat. Animal Health 17: 222-227.

Helmuth, B., J.G. Kingsolver, and E. Carrington, 2005.  Biophysics, physiological ecology, and climate change: does mechanism matter?  Ann.l Rev. Physiol. 67: 177-201.

Heyland, A., J. Hodin, and A. M. Reitzel. 2005. Hormone signaling in evolution and development: a non-model system approach. Bioessays 27, 64-75.

Hofmann, G. E., J. L. Burnaford, and K. T. Fielman. 2005. Genomics-fueled approaches to current challenges in marine ecology. Trends in Ecology and Evolution 20:305-311.

Horne, J.K. and J.M. Jech. 2005. Models, measures, and visualizations of fish backscatter. In H. Medwin [ed.]. Sounds in the Seas: From Ocean Acoustics to Acoustical Oceanography. Academic Press, New York. pp. 374-397

Iyengar, E.V. 2005.  Seasonal feeding mode changes in the marine facultative
kleptoparasite Trichotropis cancellata (Gastropoda, Capulidae): trade-offs between trophic strategy and reproduction.  Canadian Journal of Zoology. 83: 1097-1111.

Jiang D., E.M. Munro, and W.C. Smith. 2005. Ascidian prickle regulates both mediolateral and anterior-posterior cell polarity of notochord cells. Curr. Biol. 15:79-85.

Kempf, S., and L. R. Page. 2005. Anti-tubulin labeling reveals ampullary neuron ciliary bundles in opisthobranch larvae and a new putative neural structure associated with the apical ganglion. Biol. Bull. 208:169-182.

Kozloff, E. N. 2005. Plants of Western Oregon, Washington & British Columbia. Timber Press, Portland, Or. 512 pp.

Mackie, G.O. and Burighel, P. (2005). The nervous system in adult tunicates: current research directions. Can. J. Zool. 83, 151-183.

Meyer, C. P.; Paulay, G. 2005.  DNA Barcoding: error rates based on comprehensive sampling.  Public Library of Science, Biology 3(12): e422.

Meyer, J. J., and J. E. Byers. 2005. As good as dead? Sublethal predation facilitates lethal predation on an intertidal clam. Ecology Letters 8:160-166.

Miskelly, J. and A. Potter.  2005.  Surveys for the Island Marble butterfly in northern coastal WA.  Washington Department of Fish & Wildlife, Olympia, WA.  26 pp.

Moore, A.T., K.E. Rankin, G. von Dassow, L. Peris, M. Wagenbach, Y. Ovechkina, A. Andrieux, D. Job, L. Wordeman. 2005. MCAK associates with the tips of polymerizing microtubules. J. Cell. Biol. 169:391-7.

Moroz, L.L., Meech RW, Sweedler JV, Mackie GO (2004) Nitric oxide regulates swimming in the jellyfish Aglantha digitale. J Comp Neurol 471:26-36.


Mussi, M, W.N. McFarland, and P. Domenici. 2005. Visual cues eliciting the feeling reaction of a planktivorous fish swimming in a current. J. Exp. Biol. 208: 831-842.

Nishizaki, M.T. & J.D. Ackerman. 2005. A secondary chemical cue facilitates adult-juvenile associations in red sea urchins (Strongylocentrotus franciscanus). Limnology & Oceanography 50(1): 354-362.

Norekian, T.P. and A.Y. Malyshev. 2005. Coordinated excitatory effect of GABAergic interneurons on three feeding motor programs in the mollusc Clione limacina. J. Neurophysiol., 93:305-315.

Ooishi, S. 2005 . Haplostomides hibernicus (Copepoda : Cyclopoida) living in the compound ascidian Polyclinum aurantium. J. Crustacean Biol. 25: 181-189

Pavlova, G.A., and A.O. Dennis Willows.  2005.  Immunological localization of Tritonia peptide in the nervous system of the terrestrial snail Helix aspersa.  J. Comp. Neurol.  491:15-26.

Primus, A. 2005. Regional  specification in the early embryo of the brittle star Ophiopholis aculeata. Develop. Biol. 2005:294-309.

Redondo R. L., J. A. Murray. 2005. A single neuron serves a significant role in effecting turning while crawling in the marine slug Tritonia diomedea (Bergh), J. Comp. Physiol. A  191:435-444.

Schaefer, J.T. and A.P. Summers. 2005. Batoid wing skeletal structure: novel morphologies, mechanical implications, and phylogenetic patterns. Journal of Morphology 264: 298-313.

Schulze, A. 2005. Sipuncula from Bocas del Toro (Panama). Caribbean Journal of Science, 41: 523-527

Schulze, A., Cutler, E. B. and Giribet, G. 2005. Reconstructing the phylogeny of the Sipuncula. Hydrobiologia, 535/536: 277-296.

Secord, D., and G. Muller-Parker. 2005. Symbiont distribution along a light gradient within an intertidal cave. Limnol. Oceanogr. 50:272-278.

Sherrard , K., and M. LaBarbera. 2005.  Form and function in juvenile ascidians.  I.  Implications of early juvenile morphologies for performance.  Marine Ecology Progress Series 287:  127-138.

Sherrard, K., and M. LaBarbera. 2005.  Form and function in juvenile ascidians.  II.  Ontogenetic scaling of volumetric flow rates.  Marine Ecology Progress Series 287:  139-148.

Smythe, T.L, and S. A, Stricker. 2005. Germinal vesicle breakdown is not fully dependent on MAPK activation in maturing oocytes of marine nemertean worms. Molecular Reproduction and Development 70: 91-102.

Sotka, E. E., J. A. Hempelmann,and C. H. Biermann. 2005. Genetic evidence of postglacial population expansion in Puget Sound rockfish (Sebastes emphaeus). Mar. Biotechnol. 7: 223-230.

Stempien, J. A. 2005. Brachyuran taphonomy in a modern tidal flat environment: preservation potential and anatomical bias. Palaios 20:400-410.

Strathmann, R. R. 2005. Ciliary sieving and active response in capture of particles by suspension-feeding brachiopod larvae. Acta Zoologica 86:41-54.

Tomasovych A, and T.A. Rothfus. 2005. Differential taphonomy of modern brachiopods (San Juan Islands, Washington State): effect of intrinsic factors on damage and community-level abundance. Lethaia 38: 271-292.

van der Straaten, N., A. Jacobson, D. Halos, P. Hershberger, A. Kocan, and R. Kocan 2005.  Prevalence and spatial distribution of intraerythrocytic parasite(s) in Puget Sound rockfish (Sebastes emphaeus) from the San Juan Archipelago, Washington (USA) J. Parasitol. 91: 980–982.

Verdugo, P., A.. L. Alldredge, F. Azam, D. L. Kirchman, U. Passow, & P. Santchi. 2005. The oceanic gel phase: A bridge in the DOM-POM continuum. Marine Chemistry  92:65-66.

von Dassow, G., and W. M. Bemment. 2005. A ring-like template for abscission. Developmental Cell 9: 578-580.

von Dassow, M. 2005. Effects of ambient flow and injury on the morphology of a fluid transport system in a bryozoan. Biol. Bull. 208: 47-59.

von Dassow, M. 2005. Flow and conduit formation in the external fluid transport system of a suspension feeder. J. Exp. Biol. 208:2931-2938.

von Dassow, Y. J., and R. R. Strathmann. 2005. Full of eggs and no place to lay them: hidden cost of benthic development. Mar. Ecol. Prog. Ser. 294:23-34.

Williams, S.L. and M.N. Dethier. 2005. High and dry: variation in net photosynthesis of the intertidal seaweed, Fucus gardneri. Ecology 86: 2375-2379.

Zeng, L. and B. J. Swalla. 2005. Molecular phylogeny of the protochordates: Chordate evolution. Can. J. Zool. 83: 24-33. 

2004

Ackerman, J.D. & M.T. Nishizaki. 2004. The effect of velocity on the suspension feeding and growth of the marine mussels Mytilus trossulus and M. californianus: Implications for competition and niche separation. Journal of Marine Systems 49: 195-207.

Alberts J.B., and G.M. Odell. 2004. In silico reconstitution of Listeria propulsion exhibits nano-saltation. PLoS Biol 2: e412.

Azizi, E., Horton, J.M. 2004. Patterns of axial and appendicular movements during aquatic walking in the salamander Siren lacertina. Zoology. 107 (2): 111-120.

Baker, Shirley M., Dianna K. Padilla. 2004. New Frontiers in the functional morphology of molluscs - A tribute to Drs. Vera Fretter and Ruth Turner. American Malacological Bulletin18: 121-127

Biermann, C.H., J.A. Marks, A.-C.E.S. Vilela-Silva, M. O. Castro, and P.A.S. Mourao. 2004. Carbohydrate-based species recognition in sea urchin fertilization: another avenue for speciation? Evol. Devel., 6:353-361.

Britton-Simmons, K. H. 2004. Direct and indirect effects of the introduced alga, Sargassum muticum on benthic, subtidal communities of Washington State, USA. Mar. Ecol. Prog. Ser. 277: 61-78.

Burnaford, J. L. 2004. Habitat modification and refuge from sublethal stress drive a marine plant-herbivore association. Ecology 85:2837-2849.

Chin, W-C., M. V. Orellana, I. Quesada, and P. Verdugo. 2004. Secretion in unicellular marine phytoplankton: Demonstration of regulated exocytosis in Phaeocyctis globosa. Plant Cell Physiol. 45: 535-542.

Christie, A., S. Cain, J. Edwards, T. Clason, E. Cherney, M. Lin, A. Manhas, K. Sellereit, N. Cowan, K. Nold, H. Strassburg, K. Graubard. 2004. The anterior cardiac plexas: an intrinsic neurosecretory site within the stomatogastric nervous system of the crab Cancer productus. J. Exp. Biol. 207, 1163-1182.

Cutler, E. B. and Schulze, A. 2004. Sipuncula from Barbados, including two new for the island plus Siphonosoma vastum; first record from the Atlantic Ocean. Bulletin of Marine Science, 74: 225-228.

Cutler, E. B., Schulze, A. and Dean, H. K. 2004. The Sipuncula of sublittoral New Zealand with a key to all New Zealand species. Zootaxa, 525: 1-19.

Davidson, B., M. Jacobs, and B. J. Swalla. 2004. The individual as a module: Solitary to colonial transitions in metazoan evolution and development. In: Modularity in Development and Evolution. G. Schlosser and G. Wagner, eds. University of Chicago Press, pp 443-465.

Domenici, P., E. Standen, and R. Levine.  2004. Escape manoeuvres in the spiny dogfish (Squalus acanthias). J. Exp . Biol. 207: 2339-2349. 

Emlet, R. B. 2006. Direct development of the brittle star Amphiodia occidentalis (Ophiuroidea, Amphiuridae) from the northeastern Pacific Ocean. Invert. Biol. 125: 154-171.

Freeman, G. 2004. the effect of larval age on developmental changes in polyp prepattern of a hydrozoan planula. Zoology 31:1-19.

Glantz, R. M., and J. P. Schroeter. 2004. Encoder adaptation modulates the visual responses of crayfish interneurons. J. Neurophysiol. 92:327-340.

Glantz, R. M., and J. P. Schroeter. 2004. Analysis and simulation of gain control and precision in crayfish visual interneurons. J. Neurophysiol. 92:2747-2761.

Gurevitch, Jessica and Dianna K. Padilla. 2004 Are invasions a major cause of extinctions? Trends in Ecology and Evolution. 19:470-474

Gupta, N.S., and R.D. Pancost. 2004. Biomolecular and physical taphonomy of angiosperm leaf during early decay: implications for fossilization. Palaios 19:428–440.

Halanych, K.M. 2004. The new view of animal phylogeny. Ann. Rev. Ecol. Evol. Sys. 35: 229-256.

Halpenny, C.M., R.M. Kocan, and P.K. Hershberger. 2004. Prevalence of the parasitic copepod Haemobaphes intermedius in juvenile buffalo sculpins from Washington State. J. Aquat. Animal Health 16: 161-163.

Hannisdal, B. 2004, Clams and brachiopods: chips that pass out of sight. Palaios19:507–513.

Heyland, A., and J. Hodin. 2004. Heterochronic developmental shift caused by thyroid hormone in larval sand dollars and its implications for phenotypic plasticity and the evolution of nonfeeding development. Evolution 58, 524-538.

Iyengar, E.V. 2004. Host-specific performance and host use in the kleptoparasitic marine snail Trichotropis cancellata. Oecologia. 138: 628-639.

Kowalewski, M. 2004. Drill holes produced by the predatory gastropod Nucella lamellosa (Muricidae): Paleobiological and ecological implications. J. Molluscan Stud. 70: 359-370.

Kowalewski, M., and M. LaBarbera. 2004. Actualistic taphonomy: Death, decay, and disintegration in contemporary settings. Palaios 19: 423-427.

Kozloff, E. N. 2004. Redescription of Cryptobia helices Leidy, 1846 (Kinetoplasta: Bodonea: Cryptobiidae), disposition of flagellates mistakenly assigned to this species, and a description of a new species from a North American pulmonate snail. Acta Protozoologica 43:123-132.

Krause Jr., R.A. 2004, An assessment of morphological fidelity in the sub-fossil record of a terebratulide brachiopod. Palaios: 19 460–476.

LaBarbera, M., and M. Kowalewski. 2004. Vacationing in the Mesozoic: Palaios 19: 421-422.

Lazo, D.G. 2004, Bivalve taphonomy: testing the effect of life habits on the shell condition of the Littleneck Clam Protothaca (Protothaca) staminea (Mollusca:Bivalvia). Palaios: 19 451–459.

Mackie, G.O. 2004. Central neural circuitry in the jellyfish Aglantha: A model 'simple nervous system.' Neurosignals 2004; 13:5-19.

Mackie, G.O. 2004. Epithelial conduction: recent findings, old questions, and where do we go from here?  Hydrobiologia 530/531, 73-80.

Mackie, G.O. 2004. The first description of nerves in a cnidarian: Louis Agassiz's account of 1850.  Hydrobiologia 530/531, 27-32.

Mackie, G., and  C. L. Singla. 2004. Cupular organs in two species of Corella (Tunicata: Ascidiacea). Invert. Biol. 123:269-281.

Marchinko, K.B., M.T. Nishizaki, & K.C. Burns. 2004. Community-wide character displacement in barnacles: A new perspective on an old pattern. Ecology Letters 7: 114-120.

Maslakova S. A., Martindale, M. Q. and Norenburg, J. L. 2004. Fundamental properties of spiralian developmental program are displayed by the basal nemertean Carinoma tremaphoros (Palaeonemertea, Nemertea). Dev. Biol.  267(2): 342-360

Maslakova, S. A., M. Q. Martindale, J. L. Norenburg. 2004. Vestigial protoconch in a basal nemertean, Carinoma tremaphoros (Nemertea;Palaeonemertea). Evol. Devel. 6:219-226.

McDonald, K. 2004. Patterns in early embryonic motility: effects of size and environmental temperature on vertical velocities of sinking and swimming echinoid blastulae. Biol. Bull.  207:93-102.

Meech,R. W. 2004. Impulse conduction in the jellyfish, Aglantha digitale. Hydrobiologia 530/531, 81-89.

Messina, C., and M. LaBarbera. 2004. Hydrodynamic behavior of brachiopod shells: experimental estimates and field observations. Palaios 19: 441–450.

Munro, E.M., Nance J, Priess, J.R. (2004) Cortical flows powered by asymmetrical contraction transport PAR proteins to establish and maintain anterior-posterior polarity in the early C. elegans embryo. Dev Cell 7:413-24.

Mork, C, P.K. Hershberger, R. Kocan, W. Batts, and J. Winton. 2004. Isolation and characterization of a rhabdovirus from starry flounder (Platichthys stellatus) collected from the northern portion of Puget Sound, Washington, USA. J. Gen. Virol. 85: 495-505.

Moroz, L. L., R. W. Meech, J. V. Sweedler, and G. O. Mackie. 2004.  Nitric oxide regulates swimming in the jellyfish Aglantha digitale.  J. Comp. Neurol. 471, 26-36.

Munro, E., J. Nance, and J.R. Priess. 2004. Cortical flows powered by asymmetrical contraction transport PAR proteins to establish and maintain anterior-posterior polarity in the early C. elegans embryo. Dev. Cell. 7:413-24.

Ooishi, S, 2004. Redescription of Haplostoma banyulensis (Copepoda: Cyclopoida: Ascidcolidae) living in the compound ascidian Tridemnum tenerumfrom Strangford Lough, Northern Ireland. J. Crustacean Biol. 24:1-8.

Ooishi, S,, and M. O’Reilly. 2004. Redescription of Haplostoma erucas (Copepoda: Cyclopoida: Ascidcolidae) living in the intestine of Ciona intestinalis from the Clyde Estuary, Scotland. J. Crustacean Biol. 24:9-16.

Ooishi, S. 2004. Female and male Haplostoma brevicauda (Copepoda : Cyclopoida: Ascidicolidae), living in compound Ascidians. J. Crustacean Biol. 24: 422-439.

O’Kelly, C. J., W. K. Bellows, and B. Wysor. 2004. Phylogenetic position of
Bolbocoleon piliferum (Ulvophyceae, Chlorophyta): evidence from reproduction zoospore and gamete ultrastructure, and small subunit RNA gene sequences. J. Phycol. 40: 209-222.

O’Kelly, C. J., W. K. Bellows, and B. Wysor. 2004. Gene sequence diversity and the phylogenetic position of algae assigned to the genera Phaeophila and Ochlochaete (Ulvophyceae, Chlorophyta). J. Phycol 40: 789-799.

O’Kelly, C. J., W. K. Bellows, and B. Wysor. 2004. Collinsella (Ulvophyceae, Chlorophyta) and other ulotrichalean taxa with shell-boring sporophytes form amonophyletic clade. Phycologia 43: 41-49.

Padilla, Dianna K. and Susan L. Williams. 2004. Beyond ballast water: aquarium and ornamental trades as sources of invasive species in aquatic ecosystems. Frontiers in Ecology and the Environment. 2:131-138.

Padilla, D. K. 2004. Form and function of radular teeth of herbivorous molluscs: Focus on the future. Am. Malacol. Bull. 18: 163-168.

Perry, J.A., R.M. Kocan, J.R. Winton, and P.K. Hershberger. 2004. High corticosteroid doses suppress resistance to Ichthyophonus in Starry Flounder. J. Aquat. Animal Health 16: 45-49.

Pernet, B. 2004. The cryptic feeding house of an invertebrate larva. Science 306:1757

Pernet, B. and W.B. Jaeckle. 2004. Size and organic content of eggs of marine annelids, and the underestimation of egg energy content by dichromate oxidation. Biol. Bull. 207:67-71

Pirtle T. J., and R. A. Saterlie. 2004. Cellular mechanisms underlying swim acceleration in the pteropod mollusk Clione limacina. Integr. Comp. Biol. 44: 37-46.

Podolsky, R. D. 2004. Life-history consequences of investment in free-spawned eggs and their accessory coats. Amer. Nat. 163:735-753.

Reitzel, A. M., and J. Webb, and S. Arellano. 2004. Growth, development and condition of Dendraster excentricus (Eschscholtz) larvae reared on natural and laboratory diets. J. Plankton Res. 26: 901-908.

Rothfus, T.A. 2004, How many taphonomists spoil the data? Multiple operators in taphofacies studies. Palaios 19: 514–519.

Santagata, S. 2004. Larval development of Phoronis pallida (Phoronidea): implications for morphological convergence and divergence among larval body plans. J. Morph. 259: 347-358.

Santagata, S. 2004. A waterborne behavioral cue for the actinotroch larva of Phoronis pallida (Phoronida) produced by Upogebia pugettensis (Decapoda: Thalassinidea). Biol. Bull. 207: 103-115.

Schulze, A. and Rice, M. E. 2004. Sipunculan diversity at Twin Cays, Belize with a key to the species. Atoll Research Bulletin, 521:1-9.

Stoeckel, James A. ,Dianna K. Padilla, Daniel W. Schnieder, Christopher R. Rehmann. 2004.
Laboratory culture of Dreissena polymorpha (Pallas, 1771) larvae: spawning success, adult
fecundity, and larval mortality patterns. Canadian Journal of Zoology 82: 1436-1443

Stricker, S. A. 2004 Dual-channel confocal ratioing of calcium dynamics in living eggs and oocytes. In Germ Cell Protocols Vol. 2: Molecular embryo analysis, live imaging, transgenesis, and cloning. H. Schatten (ed.) Humana Press, Totowa, NJ, pp. 137-148.

Strickland L., G. von Dassow, J. Ellenberg, V. Foe, P. Lenart, and D. Burgess. 2004. Light microscopy of echinoderm embryos. Methods Cell Biol. 74: 371-409.

Swalla, B. J. 2004. Protochordate gastrulation: Lancelets and ascidians. In: Gastrulation; C. Stern, ed. Cold Spring Harbor Press. pp 139-149.

Swalla, B. J. 2004. Procurement and culture of ascidian embryos. In: Methods in Cell Biology: Experimental Analysis of the Development of Sea Urchins and Other Non-Vertebrate Deutero-stomes. C. Ettenson, G. Wessell and G. Wray, eds. Elsevier Science/Academic Press pp 115-141.

Terry, R.C. 2004. Owl pellet taphonomy: a preliminary study of the postregulation taphonomic history of pellets in a temperate forest. Palaios 19: 497–506.

Tomasovych, A.  2004, Postmortem durability and population dynamics affecting the fidelity of brachiopod size-frequency distributions. Palaios 19: 477–496.

Voltzow, J.  2004. Continuity of flow through the gastropod mantle cavity. Amer. Malacol. Bull. 18:155-161.

Voltzow, J., P. J. Morris, and R. M. Linsey. 2004. Anatomy of and patterns of
water currents through the mantle cavities of pleurotomariid gastropods. J. Morph. 262:659-666.

von Dassow, G. and E. Meir . 2004. Exploring modularity with dynamical models
of gene networks. In Modularity in Development and Evolution, G. Schlosser and G. P. Wagner, eds. University of Chicago Press. Pp 245-287.

Wang, J.; S. Cain and K. Lohmann  2004.  Identifiable neurons inhibited by Earth-strength magnetic stimuli in the mollusk Tritonia diomedea. J. Exp. Biol. 207: 1043-1049.

Wright, J.T., S.L. Williams and M.N. Dethier. 2004. No zone is always greener: Fucus gardneri embryos, juveniles and adults are differentially affected by season and zone. Marine Biology 145: 1061-1073.

2003

Adams, B.A., Tello, J.A., Erchegyi, J., Warby, C., Hong, D.J., Akinsanya, K.O., Mackie, G.O., Vale, W., Rivier, J.E. and Sherwood, N.M. 2003. Six novel GnRH hormones are encoded as triplets on each of two genes in the protochordate Ciona intestinalis. Endocrinology 144, 1907-1919.

Biermann, C. H., B. D. Kessing, and S. R. Palumbi 2003. Phylogeny and development of marine model species: strongylocentrotid sea urchins. Evolution & Development, 5(4), 360-371.

Buznikov GA, Nikitina LA, Voronezhskaya EE,Bezuglov VV, Willows AOD, Nezlin LP 2003. Localization of serotonin and its possible role in early embryos of Tritonia diomedea (Mollusca, Nudibranchia). Cell Tissue Res 311:259-266.

Buznikov, GA, Slotkin, TA, Lauder, JM 2003. Sea Urchin Embryos and Larvae as Biosensors for Neurotoxins. In: Current Protocols in Toxicology, Vol. 1(Maines MD, Costa LG, Hodgson E, Reed DJ, Ed), John Wiley & Sons, Inc., NY,pp. 1.6.1-1.6.24

Christie, A., Edwards, J., Cherney, E., Clason, T., Graubard, K. 2003. Immunocytochemical evidence for nitric oxide- and carbon monoxide-producing neurons in the stomatogastri nervous system of the crayfish Cherax quadricarinatus. Journal of Comparative Neurology. 467:293-306.

Davidson, B.; Smith-Wallace, S.; Howsmon, R.;Swalla, B. 2003. A morphological and genetic characterization of metamorphosis in the ascidian Boltenia villosa. Dev Gnes Evol (2003) 213:601-611.

Davidson, B., Jacobs, M. and Swalla, B. J. 2003. In press -The individual as a module: Metazoan Evolution and coloniality. In: Modularity in Development and Evolution. Gerhard Schlosser and Günter Wagner, eds. University of Chicago Press.

Dethier, M.N 2003. Biotic inventory and recommendations for long-term monitoring at Perego’s Lagoon, Whidbey Island. Report to The Nature Conservancy of Washington, December 2003.

Dethier, M. N., K. McDonald, and R. R. Strathmann 2003. Colonization and connectivity of habitat patches for coastal marine species distant from source populations. Conservation Biol. 17(4):1024-1035.

Dethier, M.N., G.C. Schoch and J. Ruesink 2003. Spatial and temporal variability of shoreline biota in south and central Puget Sound: 2001 samples and analyses. Report for the Washington State Dept. of Natural Resources, Nearshore Habitat Program, May 2003.

de Visser, J.A., Hermisson J, Wagner, G.P., Ancel Meyers L, Bagheri-Chaichian H, Blanchard, J.L., Chao L, Cheverud, J.M., Elena, S.F., Fontana W, Gibson G, Hansen, T.F., Krakauer D, Lewontin, R.C., Ofria C, Rice, S.H., von Dassow, G, Wagner A, Whitlock, M.C. (2003) Evolution and detection of genetic robustness. Evolution Int J Org Evolution 57:1959-72.

Duggins DO, Eckman JE, Siddon C, Klinger T 2003. Population, morphometric and biomechanical studies of three understory kelps along a hydrodynamic gradient. Marine Ecology Progress Series 265:57-76.

Eckman JE, Duggins DO, Siddon C 2003. Current and wave dynamics in the shallow subtidal region of the San Juan Archipelage, Washington (USA): Implications to the ecology of understory and surface-canopy kelps. Marine Ecology Progress Series 265:45-56.

Freeman, G. 2003. Regional specification during embryogenesis in rhynchonelliform brachiopds. Dev. Biol. 261:268-287.

Gorbman, A, Whiteley, A & Kavanaugh, S 2003. Pheromonal stimulation of spawning release of gametes by gonadotropin releasing hormone in the chiton, Mopalia sp. General & Comparatie Endocrinology 131 (2003) 62-65.

Greene, C.H., and A.J. Pershing 2003. The flip-side of the North Atlantic Oscillation and modal shifts in slope-water circulation patterns.  Limnol. Oceanogr. 48: 319-322. Writing done at FHL, Whiteley Center.

Greene, C.H., A.J. Pershing, R.D. Kenney, and J.W. Jossi 2003. Impact of climate variability on the recovery of endangered North Atlantic right whales. Oceanography 16: 96-101.

Grünbaum, D., and R. R. Strathmann 2003. Form, performance, and trade-offs in swimming and stability of armed larvae. J. Mar. Res.61:659-691.

Hacker, S.D. and M.N. Dethier 2003. Community dependent invasion and removal of English cordgrass, Spartina anglica, in Puget Sound, Washington.  Botanical Electronic News 312. 

Hempelmann, J*, EE Sotka and C Biermann 2003. Conservation genetics of the Puget Sound rockfish Sebastes emphaeus. American Genetic Association - Conservation Genetics Conference(September 14-17, 2003 - Front Royal, VA)

Horton, J.M., Drucker, E.G., Summers, A.P. (2003). 2003. Swiftly swimming fish show signs of stiff spines. Integrative and Comparative Biology 43:(6): 905.

Huber, D. R. and Motta, Phillip J. 2003. Comparative Analysis of Methods for Determining Bite Force in the spiny dogfish Squalus acanthias. Journal of Experimental Zoology . 301A:26-37.

Karatayev, Alexander Y., Lyubov E. Burlakova, Dianna K. Padilla, and Ladd E. Johnson. 2003.
Patterns of spread of the zebra mussel (Dreissena polymorpha (Pallas)): the continuing invasion of Belarussian lakes. Biological Invasions. 5:213-221.

Kingsolver, J. G. and R. B. Huey (Editors) 2003. Selection and evolution of performance in nature. Integrative and Comparative Biology 43(3).

Kingsolver, J. G. and R. Gomulkiewicz 2003. Environmental variation and selection on performance curves. Integrative and Comparative Biology 43:470-477.

Kowalewski, Michal, et al 2003. Quantitative fidelity of brachiopod-mollusk assemblages from modern subtidal environments of San Juan Islands, USA. Journal of Taphonomy, Vol 1 (1), 43- 66.

Lambert, C. C. and Lambert, G. 2003. Persistence and differential distribution of nonindigenous ascidians in harbors of the Southern California Bight. Mar. Ecol. Prog. Ser. 259: 145-161. Writing done at FHL.

Lambert, G. 2003. New records of ascidians from the NE Pacific: a new species of Trididemnum, range extension and redescription of Aplidiopsis pannosum (Ritter, 1899) including its larva, and several nonindigenous species. Zoosystema 25 (4): 665-679.

Mackie, G. O., Marx, R.M. and Meech, R.W. 2003. Central circuitry in the jellyfish Aglantha digitale IV. Pathways coordinating feeding behaviour. J. Exp. Biol. 206, 2487-2505.

Mackie, G.O. and Singla, C.L. 2003. The capsular organ of Chelyosoma productum (Ascidiacea: Corellidae): a new tunicate hydrodynamic sense organ. Brain, Behavior and Evolution 61, 45-58.

McKitrick T* and B Pernet 2003. (in final revision) "A genetic and ecological description of Myxicola infundibulumand M. aestheticaaggregations."  Target journal: Sarsia.

Matsukuma, A., Paulay, G.; Hamada, N.  2003. Chama cerion n. sp. a new chamid bivalve (Mollusca) from Polynesia and Melanesia.  Venus 62: 19-27.

Meech, R.W. 2003. Jellyfish - what a nerve! In "Fundamental Neuroscience, Second Edition" , p. 158. Ed. L.R.Squire, F.E.Bloom, S.K.McConnell, J.L.Roberts, N.C.Spitzer & M.J.Zigmond. Academic Press, San Diego.

Mills, C.E., C.G. Mittermeier and S. Earle 2003. Jellyfish and ctenophore blooms. Conservation International (Washington,D.C.), and Agrupació Sierra Madre (Mexico City).

Nance J, Munro, E.M., Priess, J.R. (2003) C. elegans PAR-3 and PAR-6 are required for apicobasal asymmetries associated with cell adhesion and gastrulation. Development 130:5339-50.

Nelson, T. A., D. Lee*, and B. C. Smith 2003. Toxic extracts from ulvoid macroalgae:  Are “green tides” harmful algal blooms?  Journal of Phycology 39(5):874-879.

Nelson, TA, Nelson, AV*, and Tjoelker, M* 2003. Seasonal and spatial patterns of "green tides" (ulvoid algal blooms) and related water quality parameters in the coastal waters of Washington State, USA.  Bot. Mar. 46:263-275.

Norekian, T.P. and Malyshev, A.Y. 2003. Coordinated excitatory effect of GABAergic interneurons on three feeding motor programs in the mollusc Clione limacina. J. Neurophysiol., submitted.

Nygren, Arne 2003. Autolytinae: molecules, morphology, and reproduction, book, Department of Marine Ecology, Goteborg University

Orellana, M. V., Lessard, E. J., Dycus, E., Chin, W-C., Foy, M. S. & Verdugo, P. 2003. Development of a high specificity ELISA assay to trace the source and fate of biopolymers in seawater. Mar. Chem. 83: 89-99.

Pernet, B. 2003. Persistent ancestral feeding structures in nonfeeding annelid larvae. Biological Bulletin 205:295-307.

Quesada, I., Chin, W-C. & Verdugo, P. 2003. ATP-independent lumenal oscillations and release of Ca2+ and H+ from mast cell secretory granules: implications for signal transduction. Biophys. J. 85: 963-970.

Sinakevitch 1, J.K. Douglass 1, G. Scholtz 2, R. Loesel 3, N.J. Strausfel * 2003. Conserved and convergent organization in the optic lobes of insects and isopods, with reference to other crustacean taxa J. Comp. Neurol. 467:150-172.

Smith, C.R. and A. R. Baco. 2003. The ecology of whale falls at the deep-sea floor. *Oceanography and Marine Biology Annual Review*/, /41: 311-354. (Review partially written at FHL). Cited 39 times in 2008-2009 (total citations, 87).

Smith, S. E., Douglas, R., Burke da Silva, K. and Swalla B. J. 2003. Morphological and molecular identification of enteropneust worms (Hemichordata: Harrimanidae) in the Pacific Northwest. Can. J. Zool. (in press)

Smith, Shannon E., Douglas, Rob, Burke da Silva, Karen, and Swalla, Billie J. 2003. Morphological and molecular identification of Saccoglossus species (Hemichordata: Harrimaniidae) in the Pacific Northwest, Can J Zool 81: 133-141.

Sotka EE, J Hempelmann* and C Biermann 2003. (in final revision) Genetic evidence of postglacial population expansion in the Puget Sound rockfish Sebastes emphaeustarget journal: Marine Biotechnology

Sotka EE and SR Palumbi 2003. (in prep)  "Population genetics of Balanus glandula in Puget Sound, WA". Target Journal Marine Biology.

Stricker, S.A. and T.L. Smythe 2003. Endoplasmic reticulum reorganizations and Ca2+ signaling in maturing and fertilized oocytes of marine protosome worms: the roles of MAPKs and MPF. Development 130: 2867-2879.

Summers, A.P., E.G. Drucker, and G. Martinez 2003. Under pressure to swim fast - shark myotomal pressure increases with increasing swimming speed, Society for Experimental Biology, Southampton, England. Comparative Biochemistry and Physiology134(3): S53.

Valle, Z.Dalla, R. Rivas-Diaz and G. Claireaux. 2003. Opercular pressure as a predictor of metabolic demand in the starry flounder (Platichthys stellatus P.). Journal of Fish Biology.

Vysotski, E.S., Liu, Z.J., Markova, S.V., Blinks, J.R., Deng, L., Frank, L.A., Herko, M., Malikova, N.P., Rose, J.P., Wang, B.C., Lee, J. 2003. Violet bioluminescence and fast kinetics from W92F obelin: structure-based proposals for the bioluminescence triggering and the identification of the emitting species. Biochemistry 42:6013-6024.

Woodin,S.A., R.A. Merz, F.M. Thomas, D.R.Edwards*, and I. L.Garcia*. 2003. Chaetae and mechanical function: tools no Metazoan class should be without. Hydrobiologia 496: 253-258.

Yushin, Vladimir, V. 2003. Ultrastructure of spermatozoa in the free-living marine nemotode of the family Selachinematidae (Chromadorida: Chromadorina). Russian Journal of Nematology, 2003,11(2), 81-90.

Zigler, K.S. and H.A. Lessios 2003. Evolution of bindin in the pantropical sea urchin Tripneustes: Comparisons to bindin of other genera. Mol. Biol. Evol. 20:220-231.

Zigler, K.S. and H.A. Lessios 2003. 250 million years of bindin evolution Biol. Bull. 205:8-15.

Zigler, K.S., E.C. Raff, E. Popodi, R.A. Raff and H.A. Lessios 2003. Adaptive evolution of bindin in the genus Heliocidaris is correlated with the shift to direct development. Evolution 57:2293-2302.

2002

Bui, B., C. Carroll, B. Fall, C. Mork, J.A. Perry, E. Sweeney, and J. Wittouck 2002. Incidence of Ichthyophonus hoferi in Puget Sound Fishes and Its Increase With Age of Pacific Herring. Journal of Aquatic Animal Health 14:50-56.

Byers, James E. 2002. Physical habitat attribute mediates biotic resistance to non-indigenous species invasion, Oecologia 130: 146-156.

Carter, Sarah K and VanBlaricom, Glenn R. 2002. Effects of experimental harvest on red sea urchins (Strongylocentrotus franciscanus) in northern Washington.

Clewley, A., Kocan, R. M., Kocan, A.A. 2002. An intraerythrocytic parasite from the spiny dogfish, Squalus acanthias L., from the Pacific Northwest; Journal of Fish Diseases, 25, 693-696.

Colin, Sean P. & John H. Costello 2002. Morphology, swimming performance and propulsive mode of six co-occurring hydromedusae.

Connor, PhD, Elizabeth A. O, William M. Vollmer, PhD, Michael Heumann, MPH, E. Ann Frazier, PhD, Victor R. Breen, MD, Jacqueline Villnave, MHS CIH, A. Sonia Buist, MD. 2002. Electronic Surveillance of Asthma: Using Electronic Billing and Clinical Databases to Identify Prevalent Asthma.

Costello, J. H. & S. P. Colin 2002. Prey resource use by coexistent hydromedusae from Friday Harbor, Washington.

Cowart, J. D. 2002. The mating system of the sea star Pteraster tesselatus Ives 1888 (Echinodermata: Asteroidea): hermaphroditism, parthenogenesis or sperm storage? MS Thesis. University of Florida, Gainesville.

DANOS, Nicole 2002. In press 2002 -Biomechanics of ventilation in the ratfish, Hydrolagus colliei. American Zoologist

Davidson, B. and Swalla, B. J. 2002. A molecular analysis of ascidian metamorphosis reveals elements of an innate immune response. Development 129: 4739-4751.

Dawn E. Dittman, Susan E. Ford and Dianna K. Padilla 2002. Effects of Perkinsus marinus on reproduction and condition of the eastern oyster, Crassostrea virginica, are seasonally variable. Journal of Shellfish Research. In Press.

Dethier, M.N., K. McDonald, and R.R. Strathmann 2002. Colonization and connectivity of habitat patches for coastal marine species distant from source populations. Conservation Biology 17:1024-1035.

Don, Cristen Nicole 2002. Evaluation of near-shore buffer zones of the San Juan Islands National Wildlife Refuge Relative to their function as a Marine Protected Area Network: Thesis

Emlet, Richard B., Craig M., & George, Sophie B. 2002. Phylum Echinodermata:Echinoidea, pp. 531-551. In: Atlas of marine invertebrate larva: London Academic Press.

Freeman, G. and Martindale, M. Q. 2002. The origin of mesoderm in phoronids. Develop. Biol. 252,301-311.

Halpenny, C.M.*, R.M. Kocan, J.R. Winton, J.A. Perry*, and P.K. Hershberger 2002. Elevated temperature exacerbatesIchthyophonusinfections in buffalo sculpin.  Fish Health Newsletter 30(2): 17-20.

Hanein Y, Böhringer KF, Wyeth RC, Willows AOD 2002. Towards MEMS probes for intracellular recording. Sensors Update 10(1.3): 1-29.

Haring, R.N., M.N. Dethier and S.L. Williams 2002. Desiccation facilitates wave-induced mortality of the intertidal alga, Fucus gardneri. Marine Ecology Progress Series 232:75-82.

Helmuth, B, CDG Harley, P Halpin, M O'Donnell, GE Hofmann and C Blanchette 2002. Climate change and latitudinal patterns of intertidal thermal stress Science 298:1015-1017.

Hershberger, P.K., K Stick,B Bui*, C Carroll*, B Fall*, C Mork*,  JA Perry*, E Sweeney*, J Wittouck*, and RM Kocan 2002. Incidence of Ichthyophonus hoferi in Puget Sound fishes and its increase with age of adult Pacific herring. Journal of Aquatic Animal Health 14: 50-56.

Hohenlohe, Paul A. 2002. Life history of Littorina scutulata and L. plena, sibling gastropod species with planktotrophic larvae, Invertebrate Biology 121 (1); 25-37.

Iyengar, E.V. 2002. Sneaky snails and wasted worms: kleptoparasitism by Trichotropis
cancellata (Mollusca, Gastropoda) on Serpula columbiana (Annelida, Polychaeta).
Marine Ecology Progress Series. 244: 153-162.

Iyengar, E.V. and C.D. Harvell. 2002. Specificity of cues triggering inducible spines in the
bryozoan Membranipora membranacea. Marine Ecology Progress Series. 225: 205-218.

Karatayev, Alexander Y., Lyubov E. Burlakova, Dianna K. Padilla 2002. The impact of zebra mussels on aquatic communities and their role as ecosystem engineers. IN: Invasive aquatic species of Europe: distributions, impacts and management. Eds: Erkki Leppäkoski (Finla Sergej Olenin (Lithuania) and Stephan Gollasch (Germany), Kluwer Scientific Publishers.

Kawachi M., Inouye I., Honda D., O'Kelly C.J., Bailey J.C., Bidigare R.R., Andersen R.A. 2002. The Pinguiophyceae classis nova, a new class of chromophyte algae whose members produce large amounts of omega-3 fatty acids. Phycological Research.

Kennedy, H.J. & R.W. Meech 2002. Fast Ca2+ signals at mouse inner hair cell synapse: a role for Ca2+ induced Ca2+ release. J.Physiol. (Lond.) 539, 15-23.

Kraft, Clifford E., Patrick J. Sullivan, Alexander Y. Karatayev, Lyubov E. Burlakova, Jeffrey C. Nekola, Ladd E. Johnson, and Dianna K. Padilla 2002. Landscape patterns of aquatic invaders: assessing dispersal extent from spatial distributions. Ecological Applications.

Lambert, C. C., Someno, T. and Sawada, H. 2002. Sperm surface proteases in ascidian fertilization. J. Exp. Zool. 292: 88-95.

Lambert, G. 2002. Nonindigenous ascidians in tropical waters: a review. Pacific Sci. 56: 291-298.

Lawrence, K.A. and Watson, W. H. III 2002. Swimming Behavior of the Nudibranch Melibe leonina, Biol Bulletin 203: 144-151.

Loew, Ellis R., McFarland, William N., and Margulies, Daniel 2002. Developmental Changes in the Visual Pigments of the Yellowfin Tuna, Thunnus Albacares, Mar Fresh Behav Physiol, Vol. 35, No. 4, pp. 235-246.

Lynn, Denis H and Struder-Kypke, Michaela 2002. Phylogenetic Position of Licnophora, Lechriopyla, and Schizocaryum, Three Unusual Ciliates (Phylum Ciliophora) Endosymbiotic in Echinoderms (Phylum Echinodermata): The Journal of Eukaryotic Microbiology 460-468

Mackie, G.O. 2002. What's new in cnidarian biology ? Can. J. Zool. 80, 1-5

Malyshev, A.Y. and Norekian, T.P. 2002. Phase-locked coordination between two rhythmically active feeding structures in the mollusk Clione limacina. I. Motor Neurons

Markova, Svetlana V., Eugene S. Vysotski, John R. Blinks, Ludmila P. Burakova, B-C.Wang, and John Lee 2002. Obelin from the bioluminescent marine hydroid Obelia geniculata: Cloning, expression, and ccomparison of some properties with those of other Ca2+-regulated photoproteins. Biochemistry A-J. American Chemical Society. Published on Web Page Est. 9.6.

McFarland, William and Levin, Simon A. 2002. Modelling the effects of current on prey acquisition in planktivorous fishes. Mar. Fresh. Behav. Physiol, Vol. 35, No. 1-2, pp. 69-85.

Meir, E.; von Dassow, G.; Munro, E.; Odell, G.  2002.  Robustness, flexibility, and the role of lateral inhibition in the neurogenic network.  Current Biology, Volume 12, 10: 778-786.

Hawryshun, C.W., H.D. Moyer, W.T. Allison, T.J. Haimberger, W.N. McFarland 2003. Multidimensional polarization sensitivity in damselfishes. J. Comp Physiol A. 189: 213-220.

Meir E, Munro, E.M., Odell, G.M., von Dassow, G. (2002) Ingeneue: a versatile tool for reconstituting genetic networks, with examples from the segment polarity network. J Exp Zool. (Mol. Dev. Evol.) 294:216-51.

Meir E, von Dassow, G, Munro, E.M., Odell, G.M. (2002) Robustness, flexibility, and the role of lateral inhibition in the neurogenic network. Curr Biol. 12:778-86.

Mianzan, H., E.W. Dawson, and C.E. Mills 2002. In press 2002 -Comb Jellies, Phylum Ctenophora. Species 2000: New Zealand - an inventory of all living species in the New Zealand biota. Museum of New Zealand Te Papa Tongarewa, Welllington.

Mills, C.E. 2002. Cubozoa and Scyphozoa. In: Common and Scientific Names of Aquatic Invertebrates from the United States and Canada: Cnidaria and Ctenophora (Second Edition). American Fisheries Society Special Publication #28, Bethesda, Maryland 115 pp.

Mills, C.E. and S.H.D. Haddock 2002. Ctenophora. In: Common and Scientific Names of Aquatic Invertebrates from the United States and Canada: Cnidaria and Ctenophora (Second Edition). American Fisheries Society, Special Publication #28, Bethesda, Maryland. 115 pp.

Miner, B.G. 2002. Are the two physiological races of Pollicipes polymerus (Cirripedea) genetically divided along the California coast? Invertebrate Biology.

Miner, B.G., J.C. Cowart, and L.R. McEdward 2002. Egg energetics for the facultative planktotroph Clypeaster rosaceus (Echinodermata: Echinoidea), revisited. Biological Bulletin.

Moroz, L.L., Meech, R.W., Sweedler, J.V. and Mackie, G.O. 2002. (under revision) Nitric oxide regulates swimming in the jellyfish Aglantha digitale. J. Neurophysiol.

Munro, Edwin M. and Odell, Garrett 2002. Morphogenetic pattern formation during ascidian notochord formation is regulative and highly robust. Development 129, 1-12.

Munro, Edwin M. and Odell, Garrett M. 2002. Polarized basolateral cell motility underlies invagination and convergent extension of the ascidian notochord. Development 129, 13-24.

Murray, S.N., R.F. Ambrose and M.N. Dethier 2002. Methods for performing monitoring, impact, and ecological studies on rocky shores. OCS Study MMS 01-070.

Mussi M Summers A, Domenici P 2002. Gait transition speed, pectoral fin-beat frequency and amplitude in Cymatogaster aggregata, Embiotoca lateralis and Damalichthys vacca. J. fish biol. 56: 1282-1293

Norenburg, J. L. and S. A. Stricker 2002. Phylum Nemertea In: Atlas of Marine Invertebrate Larvae (C. Young, M.A. Sewel, and M. Rice, eds.), pp. 163-179, Academic Press, San Diego.

O'Kelly, C.J. 2002. Glossomastix chrysoplasta n. gen., n. sp. (Pinguiophyceae), a new coccoidal, colony-forming golden alga from southern Australia. Phycological Research, 50:67-74.

Ooishi, S. 2002. Redescription of Botryllophilus inaequipes Hansen, 1923 (Crustacea: Copepoda: Cyclopoid: Ascidicolidae). Proceedings of the Biological Society of Washington 115(3):636-649.

Ooishi, S. 2002. Description of Botryllophilus sarsi, new species (Copepoda: Cyclopoida: Ascidicolidae), replacing B. brevipes Sars, 1921. Journal of Crustacean Biology 22(4):819-833.

Ooishi, S. 2002. Female and male Haplostomides scotti (Copepoda: Cyclopoida) living in the compound ascidian Polyclinum aurantium. Journal of Crustacean Biology 22: 249-267.

Podolsky, Robert D. 2002. Fertilization ecology of egg coats: physical versus chemical contributions to fertilization success of free-spawned eggs, The Journal of Experimental Biology 205: 1657-1668.

Popescu, Ion R. and Frost, William N. 2002. Highly dissimilar behaviors mediated by a multifunctional network in the marine mollusc Tritonia diomedea. Behavioral/ Systems Neuroscience. In press.

Santagata, Scott 2002. Structure and metamorphic remodeling of the arval nervous system and musculature of Phoronis pallida (Phoronida), Evolution and Development 4:1, 28-42.

Satterlie, R.A. 2002. Neuronal Control of Swimming in Jellyfish: A Comparative Story Can. J. Zool. 80: 1654-1669.

Schmeeckle, M. W. and Nelson, J. M. 2002. Direct numerical simulation of bedload transport using a local, dynamic boundary condition: Sedimentology - in press (expected 2002)

Staver, J. M., and R. R. Strathmann 2002. Evolution of fast development of embryos to early swimming. Biological Bulletin 203: 58-69.

Strathmann, R. R., J. M. Staver, and J. R. Hoffman. 2002. Risk and the evolution of cell cycle durations of embryos. Evolution 56(4): 708-720.

Strathmann, R. R., T. P. Hughes, A. M. Kuris, K. C. Lindeman, S. G. Morgan, J. M. Pandolfi, and R. R. Warner 2002. Evolution of local-recruitment and its consequences for marine populations. Bulletin of Marine Science 70(1) Suppl:377-396.

Vickery, Minako S., Vickery, Michael C. and McClintock, James B 2002. Morphogenesis and organogenesis in the regenerating planktotrophic larvae of asteroids and echinoids

Vilela-Silva, Ana-Cristina E. S., Michelle O. Castro, Ana-Paula Valente, Christiane H. Biermann, and Paulo A. S. Mourao 2002. Sulfated fucans from the egg Jellies of the closely related sea urchins Strongylocentrotus droebachiensis and Strongylocentrotus pallidus ensure species-specific fertilization J. Biol. Chem., Vol. 277, Issue 1, 379-387.

Vollmer, William M., Michael Heumann, Victor Breen, Elizabeth O‚Connor, Jacqueline Villnave, E. Ann Frazier, A. Sonia Buist 2002. Incidence of Work-Related Asthma in a Health Maintenance Organization.

von Dassow, G, Odell, G.M. (2002) Design and constraints of the Drosophila segment polarity module: robust spatial patterning emerges from intertwined cell state switches. J Exp Zool. (Mol. Dev. Evol.) 294:179-215.

Watson, Winsor H III, Newcomb, James M, Thompson, Stuart 2002. Neural Correlates of Swimming Behavior in Melibe leonina.

Wilga, CD 2002. A functional analysis of jaw suspension in elasmobranchs. Biol. Jour. of the Linnean Society 75: 483-502.

Winchell, C.J., Sullivan, J., Cameron, C.B., Swalla, B. J. and Mallatt, J. 2002. Evaluating hypotheses of deuterostome phylogeny and chordate evolution with new LSU and SSU ribosomal DNA data. Mol. Biol. and Evol. 19:762-776.

Wray, G. A., and R. R. Strathmann 2002. Stasis, change, and functional constraint in the evolution of animal body plans, whatever they may be. Vie Milieu 52 (4): 189-199.

Yushin, Vladimir, V. and Coomans, A., Borgonie, G. Mlakhov, V. 2002. Ultrastructural study of cuticle formation during embryogenesis of the free-living marine nematode Enoplus demani (Ebiokuda), Invertebrate Reproduction and Development, 42:2-3 (2002) 189-203.

2001

Anderson, Roland C. 2001. Aquarium Husbandry of Pacific Northwest Marine Invertebrates. Published by Seattle Aquarium.

Ashley, C., Lipscomb, Allhouse, et al 2001. The effects of the inotropic agent EMD 57033 on activation and relaxation kinetics of frog skinned skeletal muscle. Eur. J. Physiol. 442:17l-177

Bagni, Maria Angela, Barbara Colombini, Heinz Amenitsch, Sigrid Bernstorff, Christopher Charles Ashley, Gert Rapp, and Peter John Griffiths 2001. Frequency-dependent distortion of meridional intensity changes during sinusoidal length oscillations of activated skeletal muscle. Biophys. J. 2001 80: 2809-2822.

Barrett, D., J.L. Mott & C.C. Romero 2001. In press. Functions of the sea urchin fertilization envelope. in M. Barker, ed., Proceedings of 10th International Echinoderm Conference.

Behrens Yamada, S. 2001. Global Invader: The European Green Crab. Oregon Sea Grant, Washington Sea Grant, Corvallis, Oregon. 123 pp.

Behrens Yamada, S. and L. Hauck 2001. Field identification of the European green crab species: Carcinus maeans (L.) and Carcinus aestuarii Nardo. Journal of Shellfish Research. Vol 20, No 3, 000-000

Behrens Yamada, S., C. Hung, and N. Richmond. 2001. The arrival of the European green crab, Carcinus maenas, in Oregon estuaries. Proceedings to the National Conference on Marine Bioinvasions, Massachusetts Institute of Technology, Cambridge, MA, January 24-27, 1999, pp. 94-99.

Bezuglov, V.V., G.N.Zinchenko, L.A.Nikitina, G.A.Buznikov. 2001. Arachidonoylcholine and N,N,-dimethylaminoethylarachidonate – novel cholinergic compounds. Russ.J. Bioorg.Chem., in press

Blanchette, C.A., B.G. Miner, and S.D. Gain 2001. In press 2001 -Variability in form, size & survival of Egregia menziesii around Point Conception, California. Marine Ecology Progress Series.

Bradley A. Buckley, Marie-Eve Owen and Gretchen E. Hofmann 2001. Adjusting the themostat: the threshold induction temperature for the heat-shock response in intertidal mussels (genus Mytilus) changes as a function of thermal history. The Journal of Experimental Biology 204, 3571-3579.

Britt L. L., Loew, E. R., McFarland, W.N. 2001. Visual Pigments in the Early Life Stages of Pacific Northwest Marine Fishes. The Journal of Exoerimental Biology. 204:2581-2587.

Buchan, Lucy A. J. and Dianna K. Padilla 2001. Predicting the likelihood of Eurasian watermilfoil presence in lakes, a tool for prioritizing macrophyte monitoring. Ecological Applications. In Press

Burlakova, Lyubov E., Alexander Y. Karatayev, and Dianna K. Padilla 2001. The impact of Dreissena polymorpha (Pallas) invasion on unionid bivalves. International Journal of Hydrobiology. In Press

Buznikov, GA, Bezuglov, VV, Nikitina, LA, Slotkin, TA, Lauder, JM 2001. Cholinergic regulation of sea urchin embryonic and larval development. Russian J. Physiol. 87 (11): 1548-1556 (In Russian).

Buznikov, GA, Lambert, HW, Lauder JM 2001. Serotonin and serotonin-like substances as regulators of early embryogenesis and morphogenesis. Cell Tissue Res. 305:177-186.

Buznikov, GA, Nikitina, LA, Bezuglov, VV, Lauder, JM, Padilla, S, Slotkin, TA 2001. An invertebrate model of the developmental neurotoxicity of insecticides: Effects of chlorpyrifos and dieldrin in sea urchin embryos and larvae. Environ. Health Perspect. 109:651-661.

Byrum, C. 2001. The cellular basis for gastrulation in the hydrozoan Phialidium. Deveolp. Biol. 240:398-409.

Byrum, C.A. 2001. An analysis of hydrozoan gastrulation by unipolar ingression. Developmental Biology 240, 627-640.

Cohen A. N., H. D. Berry, C. E. Mills, D. Milne, K. Britton-Simmons, M. J. Wonham, D. L. Secord, J. A. Barkas, B. Bingham, B. E. Bookheim, J. E. Byers, J. W. Chapman, J. R. Cordell, B. Dumbauld, A. Fukuyama, L. H. Harris, A. J. Kohn, K. Li, T. F. Mumford Jr., V. Radashevsky, A. T. Sewell, and K. Welch 2001. Report of the Washington State Exotics Expedition 2000: A Rapid Assessment Survey of Exotic Species in the Shallow Waters of Elliott Bay, Totten and Eld Inlets, and Willapa Bay. Nearshore Habitat Program, Washington State Department of Natural Resources, Olympia, Washington, 46 pp.

Colin, Sean P. and Costello, John H. 2001. Morphology, wimming performance and propulsive mode of six co-occurring hydromedusae, The Journal of Experimental Biology 205: 427-437.

Crandall, Frank B., Kajihara, Hiroshi, Mawatari, Shunsuke F. and Iwata, Fumio 2001. The status of four Japanese nemertean species of Yamaoka. Hydrobiologia 456: 175-185.

Davidson, Brad, and Swalla, B.J. 2001. Isolation of genes involved in ascidian metamorphosis: epidermal growth factor signaling and metamorphic competence, Genes Development and Evolution 211:190-194.

Dethier, M. N., and R. R. Strathmann 2001. Presence and absence of coastal marine species on a patch of rocks distant from source populations Ecol. Appl., in review.

Dethier, M.N. and R.S. Steneck 2001. Growth and persistence of diverse intertidal crusts: survival of the slow in a fast-paced world. Mar. Ecol. Prog. Ser. 223:89-100.

Duggins, D.O., J.E. Eckman, C.E. Siddon, and T Klinger 2001. The interactive role of mesograzers and flow on survival of kelps. Marine Ecology Progress Series 223:143-155.

Freeman, G. 2001. The developmental biology of brachiopods. Paleontological Society Papers 7:69-88.

Frost, W.N., Hoppe, T.A., Wang, J., and Tian, L.- M. 2001. In press 2001. Neurons in Tritonia diomedea. Am. Zool.

Gordon, A.M., Regnier, M. and Homsher, E. 2001. In press 4/1/2001. Skeletal cardiac muscle contractile activation: tropomyosin "rocks and rolls." NIPS 16:49-55, 2001.

Hacker, S.D., D. Heimer, C.E. Hellquist, B. Reeves, T. Riordan, and M.N. Dethier 2001. A marine plant (Spartina anglica) invades widely varying habitats: potential mechanisms of invasion and control. In press, Biological Invasions.

Halanych, Kenneth M and Passamaneck, Yale 2001. A Brief Review of Metazoan Phylogeny and Future Prospects in Hox-Research. American Zoology. 41:629-639.

Hanein, Y., U. Lang, J. Theobald, R. Wyeth, K. F. Böhringer, T. Daniel, D.D. Denton and A. O. D. Willows 2001. Intracellular Recording with High Aspect Ratio, MEMS Neuronal Probes,‰ Transducers‚01 - The 11th International Conference on Solid-State Sensors and Actuators, Munich, Germany, June 10-14, 2001. Acceptance ratio approx. 400:850, 200 posters.

Hershberger, P.K. and R.M. Kocan 2001. Washington DNR herring study 2000: Health of Puget Sound herring stocks. Prepared for Washington Department of Natural Resources #FY00-183. 29p.

Hershberger, P.K., N.E. Elder, G.D. Marty, J. Johnson, and R.M. Kocan 2001. Management of Pacific herring closed pound spawn-on-kelp fisheries to optimize fish health and product quality. North American Journal of Fisheries Management 21: 550-555.

Hickman, C.S., Hadfield, M.G., 2001. Larval muscle contraction fails to produce torsion in a trocliodengastropod. Biol. Bull. 200:257-260.

Hodin, J., J.R. Hoffman, B.G. Miner, and B.J. Davidson 2001. Thyroxine and the evolution of lecithotrophic development in echinoids. In: Echinoderms 2000, M. Barker (ed). Swets and Zeitlinger, Lisse. pp. 447-452.

Hohenlohe, P.A. 2001. Limits to gene flow and mechanisms of marine speciation: a modeling approach. To be submitted to Evolution.

Hohenlohe, P.A. 2001. Life history of Littorina scutulata and L. plena, sibling gastropod species with planktotrophic larvae. To be submitted to Invertebrate Biology.

Hohenlohe, P.A. 2001. Distribution and speciation of the sibling gastropod species Littorina scutulata and L. plena. To be submitted to J. Exp. Mar. Biol. Ecol.

Hohenlohe, PA & EG Boulding 2001. A molecular assay identifies morphological characters useful for distinguishing the sibling species Littorina scutulata and L. plena. J. Shellfish Res. 20(1): 453-457.

Hoskins, B. K., C. C. Ashley, G. Rapp, and P. J. Griffiths 2001. Time-Resolved X-Ray Diffraction by Skinned Skeletal Muscle Fibers during Activation and Shortening. Biophys. J. 2001 80: 398-414.

Illarionov, B.A., Illarionova, V.A., Bondar, V.S., Vysotski, E.S., and Blinks, J.R 2001. All three calcium-binding sites participate in the regulation of obelin luminescence. In Bioluminescence and Chemiluminescence 2000, edited by J F Case, PJ Herring, BH Robison, SHD Haddock, LJ Kricka, PE Stanley, World Scientific Publishing Company, Singapore.

Illarionov, B.A., Illarionova, V.A., Bondar, V.S., Vysotski, E.S., and Blinks, J.R. 2001. Where does manganese bind when it triggers the luminescence of calcium-regulated photoproteins? In Bioluminescence and Chemiluminescence 2000, edited by J F Case, PJ Herring, BH Robison, SHD Haddock, LJ Kricka, PE Stanley, World Scientific Publishing Company, Singapore. In Press, 2001.

Iwata, Fumio 2001. Nipponnemertes fernaldi, a new species of swimming monostiliferous hoplonemertean from the San Juan Archipelago, Washington, U.S.A. Proceedings of the Biological Society of Washington 114 (4):833-857.

Iyengar, Erika V. and Harvell, D. Drew 2001. Predator deterrence of early developmental stages of temperate lecithotrophic asteroids and holothuroids. Journal of Expermental Marine Biology and Ecology 264: 171-188.

Johnson, Kevin and Russel Zimmer 2001. Phylum Phoronida, In: Craig Young and Mary Rice, eds., Atlas of Marine Invertebrate Larvae, Chapter 22, pp. 477-487. London: Academic Press.

Jumars, P.A., J.E. Eckman and E. Koch 2001. Animals and plants in benthic flows. pp. 320-347 in B. Boudreau and B.B. Jørgensen, Eds. The Benthic Boundary Layer: Transport Processes and Biogeochemistry. Oxford Univ. Press, NY.

Kingsolver, J. G., R. Gomulkiewicz, and P. A. Carter 2001. Variation, selection and evolution of function-valued traits. Genetica 112/113:87-104.

Kocan, R.M., P.K. Hershberger, and N.E. Elder 2001. Survival of the North American strain of viral hemorrhagic septicemia virus (VHSV) in filtered seawater and seawater containing ovarian fluid, crude oil, and serum-enriched culture medium. Diseases of Aquatic Organisms 44: 75-78.

Kocan, R.M., P.K. Hershberger, N.E. Elder, and J.R. Winton 2001. Epidemiology of viral hemorrhagic septicemia (VHS) among juvenile Pacific herring and Pacific sandlances in Puget Sound, Washington. Journal of Aquatic Animal Health 13: 77-85.

Kozloff, E.N., & Westervelt, L.A. 2001. Vorticeros praedatorium sp.nov. (Matyhelminthes: Prolecithophora: Magiostomidae) from the Pacific coast of North America. Cohiers de Biologie Marine, 42: 303-314.

Lambert , C. C. 2001. Fertilization-induced glycosidase release and interspecific sperm competition in ascidians. In: Sawada, H., Yokosawa, H. and Lambert, C. C. (ed.), The Biology of Ascidians. Tokyo, Springer-Verlag, pp. 24-29. (Book Chapter)

Lambert, C. 2001. Last year I co-edited a book with two others on ascidian biology: The Biology of Ascidians ed. by Sawada, H., Yokosawa, H. and Lambert, C. C. 2001 Springer-Verlag, Tokyo.

Lambert, C.C . 2001. Germinal vesicle breakdown in ascidian oocytes is controlled by kinases and phosphatases. Poster presentation at 60th annual meeting of the Society for Developmental Biology in Seattle. (Poster)

Lambert, G. 2001. A global overview of ascidian introductions and their possible impact on the endemic fauna. In: Sawada, H., Yokosawa, H. and Lambert , C. C. (ed.), The Biology of Ascidians. Tokyo, Springer-Verlag, pp. 249-257. (Book Chapter)

Lambert, G. and Sanamyan, K. 2001. Distaplia alaskensis sp. nov. (Ascidiacea, Aplousobranchia) and other new ascidian records from south-central Alaska, with a redescription of Ascidia columbiana (Huntsman, 1912). Can. J. Zool. 79: 1766-1781.

Levinton, J. 2001. Marine Biology: Function, Biodiversity, Ecology, 2nd Edition. 2001. New York, Oxford University Press, 515 pp. (a part written at Friday Harbor)

Levinton, J.S., J.E. Ward, S.E. Shumway, S. M. Baker 2001. Feeding Processes of Bivalves: Connecting the Gut to the Ecosystem. Pp. 385-400. In Organism-sediment Interactions, ed. J. Y. Aller, S. A. Woodin, R. Aller, Belle W. Baruch Library in Marine Science no. 21. University of South Carolina Press, Columbia, SC 29208. USA.

Marko, P.B., and J.B.C. Jackson 2001. Patterns of morphological diversity among and within arcid bivalve species pairs separated by the Isthmus of Panama. J. Paleont., 75:590-606.

Markova, Svetlana V., Eugene S. Vysotski, John R. Blinks, Ludmila P. Burakova, B-C.Wang, and John Lee 2001. Obelin from the Bioluminescent Marine Hydroid Obelia geniculata: Cloning, Expression, and Comparison of Some Properties with Those of Other Ca2+-Regulated Photoproteins. Biochemistry A-J. American Chemical Society. Published on Web Page Est. 9.6.

Martyn, D.A., Regnier, M., Xu, D. and Gordon, A.M. 2001. Ca2+- and cross-bridge- dependent changes in N- and C- terminal structure of troponin C in rat cardiac muscle. Biophys. J. 80:360-370, 2001.

Matta, MB, J Linse, C Cairncross, L Francendese, RM Kocan 2001. Reproductive and transgenerational effects of methylmercury or Araclor 1268 on Fundulus heteroclitus. Environm. Toxicol. Chem. (in press)

Mayer, L.M., P.A. Jumars, M. J. Bock, Y.-A. Vetter and J. L. Schmidt 2001. Two roads to Sparagmos: Extracellular digestion of sedimentary food by bacterial infection vs. deposit feeding. In: J.Y. Aller, S.A. Woodin and R.A. Aller, eds. Organism-Sediment Interactions. Univ. of South Carolina Press, Columbia (I have been assured that it was printed in 2001 but have not seen the final and so do not have page numbers.)

McEdward, L.R., and B.G. Miner 2001. Larval and life cycle patterns in echinoderms. Canadian Journal Zoology 79: 1125-1170.

McEdward, L.R., and B.G. Miner 2001. Larval ecology of echinoids. In: Biology and ecology of edible sea urchins, Lawrence J.M. (ed). Elsevier, Amsterdam. pp. 59-78.

Meech, RW & M.Holley 2001. Ion-age molecular motors. Nature Neurosci. 4, 771-773.

Mianzan, H., E.W. Dawson, and C.E. Mills 2001. in press 2001. Comb Jellies, Phylum Ctenophora. Species 2000: New Zealand - an inventory of all living species in the New Zealand biota. Museum of New Zealand Te Papa Tongarewa, Welllington, in press.

Mills, C.E. 2001. Jellyfish blooms: are populations increasing globally in response to changing ocean conditions? Hydrobiologia, 451: 55-68.

Mork, C, R Kocan, P Hershberger, J Winton 2001. Identification of a new rhabdovirus from starry flounder in the San Juan Archipelago (Puget Sound, WA) Dis. Aquat. Organisms. (in press)

Moroz, L.L., Meech, R.W., Sweedler, J.V. and Mackie, G.O. 2001. Nitric oxide regulates swimming in the jellyfish Aglantha digitale. J. Neurophysiol.

Nelson, J. M., Schmeeckle, M. W., and Shreve, R. L. 2001. Turbulence and particle entrainment: p. 1-26 in Gravel Bed Rivers V, New Zealand National Institute of Water & Atmospheric Research (NIWA)

Nelson, J. M., Schmeeckle, M. W., and Shreve, R. L. 2001. Entrainment revisited: high-frequency measurements of forces on sediment particles in turbulent flow: p. 110-117, ch. XI, in Proceedings of the 7th Federal Interagency Sedimentation Conference, 25-29 March 2001, Reno, Nevada

Nelson, J. M., Schmeeckle, M. W., Shreve, R. L., and McLean, S. R. 2001. Sediment entrainment and transport in complex flows: in G. Seminara (Editor), Morphodynamics of Rivers and Estuaries, International Association of Hydraulic Research

Norekian, T.P. and R.A. Satterlie 2001. Serotonergic neural system not only activates swimming, but also inhibits competing neural centers in a pteropod mollusc. Amer. Zool. 41: 993-1000.

Norekian, T.P. and Satterlie R.A. 2001. Serotonergic neural system not only activates swimming but also inhibits competing neural centers in a pteropod mollusc. American Zool. 41(4):293-300.

Ooishi, S. 2001. Description of Botryllophilus sarsi, sp. nov., replacing B. brevipes Sars. Journal of Crustacean Biology 22: 819-833.

Ooishi, S. 2001. Redescription of Botryllophilus inaequipes (Copepoda: Cyclopoida). Proceeding of the Biological Society of Washington 115(3): 636-649.

Ooishi, S. 2001. Two ascidicolous copepods, Halostomides otagoensis n. sp. and Botryllophilus cf. banyulensis Brement, living in compound ascidians from Otago Harbor, New Zealand. Hydrobiologia 453: 417-426.

Padilla, Dianna K. 2001. Food and environmental cues trigger a inducible offense. Evolutionary Ecology Research. 3:15-25.

Podolsky, R.D. 2001. EVOLUTION OF EGG TARGET SIZE: AN ANALYSIS OF SELECTION ON CORRELATED CHARACTERS. Evolution 55(12):2470-2478.

Sarthy, V. and Ripps, H 2001. The Retinal Müller Cell-Structure and Function. Kluwer Academic/Plenum Press, New York, NY.

Satterlie, R.A. 2001. Swimming in Opisthobranch Mollusks: Introduction to the Symposium. Amer. Zool. 41: 939-942.

Satterlie, R.A. and Norekian, T.P. 2001. Serotonergic system and swim acceleration: problems and solutions. American Zool. 41(4):301-308.

Satterlie, R.A. and T. Nolen 2001. Why do cubomedusae have only four swim pacemakers? J. Exp. Biol. 204: 1413-1419.

Satterlie, R.A. and T.P. Norekian 2001. Neuronal control of locomotory speed: The

Sawada, H., Yokosawa, H. and Lambert, C. C. 2001. The Biology of Ascidians. Springer-Verlag, Tokyo

Schmeeckle, M. W., Nelson, J. M., Pitlick, J., Bennett 2001. Interparticle collisions of natural sediment grains in water: Water Resources Research

Secord, David 2001. Community Ecological Implications of Symbiotic Interactions. IN: Seckbach, Joseph, Ed. Treatise on Symbiotic Phenomena. Kluwer Academic Publishers: Dordrecht. To Appear.

Self, R.F.L., P. A’Hearn, P.A. Jumars D.R. Jackson, M.D. Richardson and K.B. Briggs 2001. Effects of macrofauna on acoustic backscatter from the seabed: field manipulations in West Sound, Orcas Island, WA, USA. J. Mar. Res. 59: 991-1020.

Sherrard, K. 2001. Cuttlebone morphology limits habitat depth in eleven species of Sepia (Cephalopoda). Biological Bulletin 198 (3): 404-414.

Soh, S.K., D.R. Gunderson and D. Ito 2001. The potential role of harvest refugia in the management of shortraker rockfish (Sebastes borealis) and rougheye rockfish (Sebastes aleutianus) in the Gulf of Alaska. Fish. Bull. 99:168-179.

Stickle, William B, Weidner, Earl H and Kozloff, Eugene N. 2001. Parasitism of Leptasterias spp. (Echinodermata: Asteroidea) by the ciliated protozoan Orchitophrya stellarum (Scuticociliata). Invertebrate Biology 120(1): 88-95.

Strathmann, R. R., and M. von Dassow 2001. Podial coverage and test size of regular echinoids. Pp. 543-550 in M. Barker, ed., Echinoderms 2000. A.A. Lisse, Balkema, The Netherlands. (International Echinoderm Conference, Dunedin.) M. Barker, ed. Balkema (in press)

Strathmann, R. R., T. P. Hughes, A. M. Kuris, K. C. Lindeman, S. G. Morgan, J. M. Pandolfi, and R. R. Warner 2001. Submitted 2001 -Evolution of local-recruitment and its consequences for marine populations. (being submitted to Bull. Mar. Sci.)

Strathmann, R. R., T. P. Hughes, A. M. Kuris, K. C. Lindeman, S. G. Morgan, J. M. Pandolfi, and R. R. Warner 2001. In review 2001 -Evolution of local-recruitment and its consequences for marine populations. Ecology,

Stricker, S.A., T.L. Smythe, L. Miller & J.L. Norenburg 2001. Comparative biology of oogenesis in nemertean worms. Acta Zool., 82: 213-230.

Stricker,S.; and Smythe, T.L. 2001. 5-HT causes an increase in cAMP that stimulates, rather than inhibits, oocyte maturation in marine nemertean worms. Development 128: 1415-1427.

Swalla, B.J. 2001. Phylogeny of the urochordates: Implications for chordate evolution. In Biology of Ascidians (Proceedings of the First International Symposium on the Biology of Ascidians) Hitoshi Sawada and Charles Lambert, ed. Springer Verlag, Tokyo pp 219-224.

Temkin, Michael and Russel Zimmmer 2001. Phylum Bryozoa. In: Craig Young and Mary Rice, eds., Atlas of Marine Invertebrate Larvae, Chapter 21, pp. 459-475. London: Academic Press.

Van Alstyne, K.L., M.N. Dethier and D.O. Duggins 2001. Spatial patterns in macroalgal chemical defenses. Chapter 8 (invited) in: J. McClintock and B. Baker, eds. Marine Chemical Ecology. CRC Press.

Vickery, Michael C.L., Vickery, Minako S., Amsler, Charles D. and McClintock, James B. 2001. Regeneration in Echinoderm Larvae. Microscopy Research and Technique 55:464-473.

Vickery, Michael C.L., Vickery, Minako S., McClintock, James B., Amsler, Charles D. 2001. Utilization of a novel deuterostome model for the study of regeneration genetics: molecular cloning of genes that are differentially expressed during early stages of larval sea star regeneration. Gene 262:73-80.

Vogel, Steven 2001. Prime Mover: A Natural History of Muscle. New York: W. W. Norton & Co., 370 pp.

Vollmer, WM, O‚Connor EA, Heumann MA, Breen VA, Villnave JM, Frazier EA, Buist AS, Henneberger, PK 2001. Incidence of Occupational Asthma (OA) in an Adult Managed Care Population‰ Amer J Respir and Crit Care Med 2001; 163 (5) A16.

von Dassow, M.; G. Odell, and D. F. Mandoli 2001. Relationships between growth, morphology and wall stress in the stalk of Acetabularia acetabulum, in the press in Planta.

2000

Allee, R.J., M.Dethier, D. Brown, L. Deegan, , R.G. Ford, T.F. Hourigan, J. Maragos, C. Schoch, K. Sealey, R. Twilley, M. Weinstein, and M. Yoklavich 2000. Marine and Estuarine Ecosystem and Habitat Classification. NOAA Technical Document.

Allhouse, L.D., Q. Li, G. Guzman, T. Miller, S. Lipscomb, J.D. Potter, C.C. Ashley 2000. Investigating the role of CA2+-binding site IV in barnacle troponin C. Pflügers Arch - Eur J Physiol 439:600-609.

Behrens Yamada, S. and C. Hunt. 2000. 2000. The arrival and spread of the European green crab, Carcinus maenas , in the Pacific Northwest. Dreissena! 11(2) 1-6. In press. National Conference on Marine Bioinvasions, Massachusetts Institute of Technology, Cambridge MA. January 24-29, 1999.

Biermann, C. H. and J. A. Marks 2000. Geographic divergence of gamete recognition systems in two sea urchins (Strongylocentrotus spp.). 10th International Echinoderm Conference (M. Barker, Editor). A. A. Balkema, Rotterdam.

Biermann, C. H. and J. A. Marks 2000. Geographic divergence of gamete recognition systems in two species in the sea urchin genus Strongylocentrotus. Zygote 8, S75-S76.

Buznikov, G.A., L.Rakich. 2000. Cholinoreceptors of early (preneural) sea urchin embryos. Neurosci Behav Physiol , 30(1): 53-62

Buznikov, G.A., V.V.Bezuglov. 2000. 5-Hydroxytryptamides and 3-hydroxytyramides of polyenoic fatty acids as a tool for studying the pre-nervous biogenic monoamines functions. Russ.J.Physiol., 86 (9):1093-1108

Byrd, J. and Lambert,C.C. 2000. Mechanism of the block to hybridization and selfing between the sympatric ascidians Ciona intestinalis and Ciona savignyi . Mol. Repro. and Dev. 55: 105-116.

Cameron, R. A., G. Mahairas, J. P. Rast, T. R. Biondi, S. Schwartzell, J. Wallace, B. T. Livingston, G. A. Wray, C. A. Ettensohn, H. Lehrach, R. J. Britten, E. H. Davison, and L. Hood. 2000. A sea urchin genome project: sequence scan, virtual map, and additional resources. Proceedings of the National Academy of Sciences (USA) 97: 9514-9518.

Collin, Rachel 2000. Sex Change, Reproduction. And Development of Crepidula adunca and Crepidula lingulata (Gastropoda: Calyptraeidae). The Veliger. 43(1):24-33.

Davidson, B. and Swalla, B.J. 2000. Isolation of genes involved in ascidian metamorphosis: EGF signaling and metamorphic competence, Genes Development and Evolution (in Press)

Dumais, J, Serikawa, KA & Mandoli, DF 2000. In press - Acetabularia: a unicellular model for understanding subcellular localization and morphogenesis during development IN Emerging Models in Plant Biology, DF Mandoli, ed. Journal of Plant Growth Regulation.

Foe, V. E., C. M. Field, and G. M. Odell 2000. Microtubules and Mitotic Cycle Phase Modulate Spatio-Temporal Distributions of F-actin and Myosin II in Drosophila Syncytial Blastoderm Embryos, Development 127:9, pages 1767-1787.

Ford, M. D. & J. H. Costello 2000. Kinematic comparison of bell contraction by four species of hydromedusae

Gabrielson, P.W., T.B. Widdowson, S.C. Lindstrom, M.W. Hawkes, & R.F. Scagel. 2000. Keys to the benthic marine algae and seagrasses of British Columbia, Southeast Alaska, Washington and Oregon. Phycological Contribution No. 5, U.B.C., Dept. of Botany: Vancouver. 189 pp.

Gordon, A.M., Homsher, E. and Regnier, M. 2000. Regulation of contraction in striated muscle (Invited Review). Physiol. Rev. 80:853-924.

Henderson, S. Y., and R. R. Strathmann 2000. Contrasting scaling of ciliary filters in swimming larvae and sessile adults of fan worms (Annelida: Polychaeta). Invertebrate Biology 119:58-66.

Hershberger, P.K., R.M. Kocan, and N.E. Elder 2000. Egg incubation studies provide clues to the future of the once-largest herring stock in Puget Sound. Puget Sound Notes 44: 5-9.

Hodin, J. 2000. Plasticity and constraints in development and evolution. Journal of Experimental Zoology (Molecular Development and Evolution) 288: 1-20.

Hodin, J., Hoffman, J., Miner, B. and Davidson, B.J. 2000. Thyroxine and the evolution of lecithotrophic development in echinoids. Proceedings of the Tenth International Echinoderm Conference (in press).

Hough, G. E. II, D. A. Nelson & S. F. Volman 2000. Re-expression of bird songs deleted during development. Anim. Behav. 60: 279-287.

Illarionov, B.A., Frank, L.A., Illarionova, V.A., Bondar?, V.S., Vysotski, E.S., Blinks, J.R. 2000. Recombinant obelin: cloning and expression of cDNA, purification and characterization as a calcium indicator. Methods in Enzymology 305: (223-249).

Iwata, Fumio 2000. Nemertinea. Systematic Zoology. Additional Volume. Published by Nakayama Shoten.

Knott, K. E., and G. A. Wray 2000. Controversy and consensus in asteroid systematics: new insights into ordinal and familial relationships. American Zoologist, in press.

Kocan, RM, PK Hershberger, NE Elder 2000. Survival of the North American strain of viral hemorrhagic septicemia virus (VHSV) in seawater, ovarian fluid and serum-enriched culture medium. Dis. Aquat. Organisms. 44:75-78.

Kozloff, E.N. 2000. A new genus and five new species of acoel flatworms from the Pacific coast of North America, and resolution of some systemic problems in the families convolutidae and otocelididae.Cahiers de Biologie Marine, 41: 281-293.

Kozloff, Eugene N. 2000. Differentiation, dedifferentiation, and redifferentiation of reproductive structures of the acoel flatworm Otocelis luteola,and notes on longevity of this species. Invertebrate Reproduction and Development, 37:2 (2000) 95-106.

Kratz, RF & DF Mandoli 2000. In press -Physiology of reproductive development in wild-type populations of Acetabularia acetabulum. (Chlorophyta). Phycologia

Lambert, C.C. 2000. Germ-cell warfare in ascidians: Sperm from one species can interfere with the fertilization of a second species. Biol. Bull. 198: 22-25.

Burlakova,Lyubov E., Alexander Y. Karatayev, and Dianna K. Padilla. 2000. The impact of Dreissena polymorpha (Pallas) invasion on unionid bivalves. International Journal of Hydrobiology. 85:529-541.

Mackie, G.O. & R.W.Meech 2000. Central circuitry in the jellyfish Aglantha digitale III: The motor giant rootlet pathway and the pacemaker system. J. exp. Biol. 203, 1797-1807.

Mackie, G.O. and Wyeth, R.C. 2000. Conduction and coordination in deganglionated ascidians. Can. J. Zool. 78 (9), 1626-1639

Mandoli, DF 2000. In press -Emerging Models in Plant Biology, Journal of Plant Growth Regulation,

Mandoli, DF & R Olmstead 2000. In press - The importance of emerging models in plant biology IN Emerging Models in Plant Biology, DF Mandoli, ed. Journal Plant Growth Regulation

Merz, Rachel and Woodin, Sarah 2000. Hooked satae: tests of the anchor hypothesis. Invertebrate Biology, 119(1): 67-82.

Mills, C. E. 2000. Planktonic Cnidaria, Ctenophora, and pelagic Mollusca. Pp. 9c2-15. In: Biological Invasions of Cold-water Coastal Ecosystems: Ballast-mediated Introductions in Port Valdez / Prince William Sound, Alaska. Final Project Report, presented to the Regional Citizens' Advisory Council of Prince William Sound, Valdez, Alaska (A. H. Hines and G. M. Ruiz, editors).

Mills, C.E. 2000. The life cycle of Halimedusa typus with discussion of other species closely related to the family Halimedusidae (Hydrozoa, Capitata, Anthomedusae). Scientia Marina, 64 (Suppl. 1): 97-106.

Mills, C.E. and J.T. Rees 2000. New observations and corrections concerning the trio of invasive hydromedusae Maeotias marginata (=M. inexpectata), Blackfordia virginica, and Moerisia sp. in the San Francisco Estuary. Scientia Marina, 64 (Suppl. 1): 151-155.

Mills, C.E., A.N. Cohen, H.K. Berry, M.J. Wonham, B. Bingham, B. Bookheim, J.T. Carlton, J.W. Chapman, J. Cordell, L.H. Harris, T. Klinger, A.J. Kohn, C. Lambert, G. Lambert,K. Li, D.L. Secord, and J. Toft 2000. The 1998 Puget Sound Expedition: a shallow water rapid assessment survey for nonindigenous species, with comparisons to San Francisco Bay. Pp 130-138 In Marine Bioinvasions: Proceedings of the First National Conference, January 24-27, 1999 (Judith Pederson, editor), MIT Sea Grant Program, Cambridge, Massachusetts.

Mills, C.E., F. Boero, A. Migotto and J.M. Gili, editors 2000. Trends in Hydrozoan Biology, IV. Scientia Marina, 64 (Suppl. 1), 284 pages. (Proceedings of the Fourth Workshop of the Hydrozoan Society, Bodega Bay, California.)

Mongeluzi, D.L. and Frost, W.N. 2000. Dishabituation of the Tritonia escape swim. Learning and Memory, 7: 43-47.

Moroz, L.L., Norekian, T.P., Pirtle, T.J., Robertson, K.J. and Satterlie, R.A. 2000. Distribution of NADPH-d reactivity and effects of Nitric Oxide on feeding and locomotory circuitry in the pteropod mollusc, Clione limacina. J. Comp. Neurol. 427:274-284.

Moroz, L.L., T.P. Norekian, T.J. Pirtle, K.J. Robertson and R.A. Satterlie 2000. Neuronal control of locomotory speed: The pteropod solution. Amer. Zool. 41: 1001-1008

Navarrete, Sergio A. , Wieters, Evie A. 2000. Variation in barnacle recruitment over small scales: larval predation by adults and maintenance of community pattern, Journal of Experimental Marine Biology and Ecology 253: 131-148.

Nelson, D. A. 2000. Song overproduction, selective attrition, and song dialects in the white-crowned sparrow. Anim. Behav. 60: 887-898.

Nelson, D. A. 2000. A preference for own-subspecies' song guides vocal learning in a song bird. Proc. Natl. Acad. Sci. U.S.A. 97: 13348-13353.

Niu, X.W. & R.W.Meech 2000. Potassium inhibition of KNa channels in guinea-pig ventricular myocytes. J. Physiol. (Lond.) 526, 81-90.

Ooishi, S. 2000. Botryllophilus bamfieldensis, new species (Copepoda: Cyclopoida: Ascidicolidae), living in a compound ascidian from the west coast of Vancouver Island, Canada. Journal of Crustacean Biology 20: 571-588.

Padilla, Dianna K. and Bengt J. Allen 2000. Paradigm lost: Reconsidering functional form and group hypotheses in marine ecology. Journal of Experimental Marine Biology and Ecology. In Press.

Parker, S. J., S. A. Berkeley, J.T. Golden, D.R. Gunderson, J. Heifetz, M.A. Hixon, R. Larson, B.M. Leaman, M.S. Love, J.A. Musick, V.M. OConnell,S. Ralston, H.J. Weeks, and M.M. Yoklavich 2000. Management of Pacific rockfish. Fisheries, 25:22-30.

Pernet, B. 2000. A scaleworm's setal snorkel. Invertebrate Biology 119:147-151.

Pernet, B. 2000. Reproduction and development of three symbiotic scaleworms (Polychaeta: Polynoidae). Invertebrate Biology 119:45-57

Pires, A., R.P. Croll, and M.G. Hadfield. 2000. Catecholamines modulate metamorphosis in the opisthobranch gastropod, Phestilla sibogae. Biol. Bull. 198: 319-331.

Pires, A., T.R. Guilbault, J.V. Mitten, and J.A. Skiendzielewski. 2000. Catecholamines in larvae and juveniles of the prosobranch gastropod, Crepidula fornicata. Comp. Biochem. Physiol. C 127: 37-47.

Rahman, Y.J., R.B. Forward, and D. Rittschof. 2000. Responses of mud snails and       
periwinkles to environmental odors and disaccharide mimics of fish odor. Journal of Chemical Ecology, 26(3): 679-696.

Reed-Anderson, Tara, Steven Carpenter, Dianna K. Padilla, and Richard Lathrop 2000. Predicted impact of zebra mussel invasion on water clarity in Lake Mendota. Canadian Journal of Fisheries and Aquatic Science. In Press.

Satterlie, R.A. and T.P. Norekian 2000. Serotonin-induced spike narrowing in a locomotor pattern generator permits increases in cycle frequency during accelerations. J. Neurophysiol. 83: 2163-2170

Satterlie, R.A., Norekian, T.P. and Pirtle T.J. 2000. Serotonin-induced spike narrowing in a locomotor pattern generator permits increases in cycle frequency during swim accelerations. J. Neurophysiol. 83:2163-2171.

Schuetz, Allen W. 2000. Extrafollicular mediation of oocyte maturation by radial nerve factor in starfish Pisaster ochraceus. Zygote 8 (November), pp.359-368. Cambridge University Press.

Secord, David and Leon Augustine 2000. Biogeography and microhabitat variation in temperate algal-invertebrate symbioses: zooxanthellae and zoochlorellae in two Pacific intertidal sea anemones, Anthopleura elegantissima and A. xanthogrammica. Invertebrate Biology 119: 139-146.

Serikawa, K & DF Mandoli 2000. In press -Asymmetric subcellular mRNA distribution correlates with enzymatic activity for carbonic anhydrases from Acetabularia acetabulum. Plant Physiology

Serikawa, KA, Porterfield, DM, Smith, PJS & DF Mandoli 2000. Calcification and measurements of proton and oxygen flux reveal subcellular domains in Acetabularia acetabulum. Planta, 211(4): 474-483.

Strathmann, R. R. 2000. Form, function, and embryonic migration in large gelatinous egg masses of arenicolid worms. Invertebrate Biology 119:319-328.

Strathmann, R. R. 2000. Functional design in the evolution of embryos and larvae. Seminars in Cell & Developmental Biology 11:395-402.

Stricker, S.A. 2000. Confocal microscopy of intracellular calcium dynamics during fertilization. BioTechniques 29: 492-498.

Stricker, S.A. and Smythe, T.L. 2000. Multiple triggers of oocyte maturation in nemertean worms: the roles of calcium and serotonin. Journal of Experimental Zoology, 287: 243-261.

Tuya, Fernando C., Soboil, and Kido, Janine 2000. An assessment of the effectiveness of Marine Protected Areas in the San Juan Islands, Washington, USA. ICES Journal of Marine Science, 57: 1218-1226.

VanAlstyne, K.L., M.N. Dethier, and D.O. Duggins. 2000. Spatial patterns in macroalgal chemical defences. In, McClintock, J and B. Baker, eds. Marine Chemical Ecology. CRC Press.

Vickery, Minako S, and McClintock, James B. 2000. Comparative Morphology of Tube Feet Among the Asteroidea: Phylogenetic Implications. Amer. Zool. 40:355-364.

Vickery, Minako S. and McClintock, James B. 2000. Effects of Food Concentration and Availability on the Incidence of Cloning in Planktotrophic Larvae of the Sea Star Pisaster ochraceus.Reference: Bio. Bull. 199: 298-304 (December 2000).

von Dassow, G. , E. Meir, E. M. Munro, and G. M. Odell 2000. The Segment Polarity Network is a Robust Developmental Module, Nature 406: 188-92.

von Dassow, G.; Meir, E.; Munro, E.; Odell, G. 2000. The segment polarity network is a robust developmental module, Nature 406: 188-92.

von Dassow, M, G Odell & DF Mandoli 2000. In press - Growth rates and predicted forces in the stalk apex and interwhorls of Acetabularia acetabulum Planta

Willows, A.O.D., L.A.Nikitina, V.V.Bezuglov, N.M.Gretskaya, G.A.Buznikov. 2000. About possible functional interaction between serotonin and neuropeptides in control processes of embryogenesis (experiments on embryos of Tritonia diomedea). Russ.J.Dev.Biol., 31(2): 106-112

Wray, G. A. 2000. Peering ahead (cautiously). Evolution & Development 2:1-2.

Wray, G. A. 2000. Gene expression during echinoderm metamorphosis. Gamete 8: S48-S49.

Wray, G. A. 2000. The evolution of embryonic patterning mechanisms in animals. Semin. Cell & Dev. Biol. 11: 353-393.

Wray, G. A. and C. J. Lowe 2000. Developmental regulatory genes and echinoderm evolution. Systematic Biology 49: 151-174.

Yushin, Vladimir, V. and Coomans, August 2000. Ultrastructure of sperm development in the free-living marine nemotodes of the family Chromadoridae (Chromadorida: Chromadorina). Nematology, 2000, Vol. 2(3), 285-296.

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